Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99878 * 2 1 4 4 H 1.48499 * 109.47272 * 270.00557 * 3 2 1 5 5 H 1.48498 * 109.47056 * 30.00802 * 3 2 1 6 6 H 1.48501 * 109.46857 * 150.00667 * 3 2 1 7 7 C 1.37876 * 120.00112 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99701 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46948 * 179.97438 * 9 7 2 11 11 C 1.35036 * 125.92781 * 124.99754 * 10 9 7 12 12 C 1.35082 * 107.98287 * 179.74522 * 11 10 9 13 13 C 1.50698 * 126.08157 * 180.24726 * 12 11 10 14 14 N 1.46906 * 109.47076 * 256.70902 * 13 12 11 15 15 C 1.46899 * 110.99583 * 184.65319 * 14 13 12 16 16 C 1.53007 * 109.46812 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47346 * 179.97438 * 16 15 14 18 18 C 1.38236 * 120.00156 * 269.73316 * 17 16 15 19 19 C 1.38238 * 119.99833 * 179.76466 * 18 17 16 20 20 C 1.38235 * 119.99996 * 0.50279 * 19 18 17 21 21 C 1.38238 * 119.99865 * 359.75049 * 20 19 18 22 22 C 1.38233 * 120.00083 * 359.97438 * 21 20 19 23 23 C 1.40856 * 107.84323 * 0.37382 * 12 11 10 24 24 C 1.48419 * 126.03498 * 179.88739 * 23 12 11 25 25 C 1.39328 * 120.12195 * 42.63760 * 24 23 12 26 26 C 1.38018 * 119.88052 * 179.97438 * 25 24 23 27 27 C 1.38325 * 120.11942 * 359.97438 * 26 25 24 28 28 C 1.38316 * 120.23951 * 0.02562 * 27 26 25 29 29 C 1.38024 * 120.12202 * 359.97438 * 28 27 26 30 30 N 1.31615 * 107.92478 * 359.62429 * 23 12 11 31 31 H 0.97002 * 119.99705 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47491 * 60.00556 * 9 7 2 33 33 H 1.09001 * 109.47371 * 300.00031 * 9 7 2 34 34 H 1.08004 * 126.01209 * 0.02562 * 11 10 9 35 35 H 1.08997 * 109.47010 * 16.70820 * 13 12 11 36 36 H 1.09004 * 109.47022 * 136.71214 * 13 12 11 37 37 H 1.00899 * 111.00161 * 308.60707 * 14 13 12 38 38 H 1.08999 * 109.47259 * 299.99852 * 15 14 13 39 39 H 1.09001 * 109.47052 * 60.00671 * 15 14 13 40 40 H 1.08999 * 109.47519 * 300.00593 * 16 15 14 41 41 H 1.09005 * 109.47003 * 60.00044 * 16 15 14 42 42 H 1.07997 * 120.00103 * 359.97438 * 18 17 16 43 43 H 1.07998 * 119.99534 * 180.22596 * 19 18 17 44 44 H 1.08001 * 119.99758 * 179.72309 * 20 19 18 45 45 H 1.07996 * 119.99769 * 179.97438 * 21 20 19 46 46 H 1.08001 * 120.00039 * 179.97438 * 22 21 20 47 47 H 1.08002 * 120.05679 * 359.95814 * 25 24 23 48 48 H 1.07995 * 119.94070 * 180.02562 * 26 25 24 49 49 H 1.08000 * 119.87886 * 179.74813 * 27 26 25 50 50 H 1.08005 * 119.93775 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.05845 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2420 -4.6228 0.8935 12 6 3.2547 -5.4473 0.5481 13 6 3.6573 -6.7085 1.2682 14 7 4.8648 -6.4532 2.0650 15 6 5.3509 -7.6883 2.6945 16 6 6.6061 -7.3829 3.5143 17 6 7.1045 -8.6497 4.1607 18 6 6.6567 -9.0062 5.4189 19 6 7.1102 -10.1708 6.0097 20 6 8.0195 -10.9735 5.3466 21 6 8.4713 -10.6143 4.0905 22 6 8.0134 -9.4527 3.4973 23 6 3.8694 -4.9173 -0.6030 24 6 5.0285 -5.5025 -1.3219 25 6 5.0906 -6.8760 -1.5473 26 6 6.1706 -7.4148 -2.2167 27 6 7.1900 -6.5938 -2.6641 28 6 7.1334 -5.2296 -2.4430 29 6 6.0580 -4.6802 -1.7746 30 7 3.2307 -3.8145 -0.9319 31 1 -0.4850 0.8401 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6247 -2.5570 0.8897 34 1 1.5772 -4.7516 1.7349 35 1 2.8481 -7.0252 1.9261 36 1 3.8618 -7.4932 0.5398 37 1 5.5855 -6.0260 1.5027 38 1 4.5783 -8.0905 3.3498 39 1 5.5898 -8.4198 1.9225 40 1 7.3789 -6.9803 2.8595 41 1 6.3669 -6.6514 4.2863 42 1 5.9499 -8.3766 5.9390 43 1 6.7575 -10.4511 6.9913 44 1 8.3772 -11.8811 5.8101 45 1 9.1820 -11.2413 3.5726 46 1 8.3668 -9.1718 2.5162 47 1 4.2951 -7.5179 -1.1985 48 1 6.2195 -8.4793 -2.3923 49 1 8.0352 -7.0201 -3.1839 50 1 7.9323 -4.5931 -2.7941 51 1 6.0147 -3.6148 -1.6030 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023424894.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = 100.020730 kcal Electronic energy + Delta-G solvation = -30366.547593 eV Core-core repulsion = 26423.809338 eV Total energy + Delta-G solvation = -3942.738255 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 361.185 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.10212 -40.15224 -39.74421 -37.46563 -35.75610 -34.31016 -33.64004 -31.94052 -31.75562 -31.71199 -31.16126 -29.34071 -28.27396 -25.74697 -25.20277 -23.57786 -23.46257 -23.39777 -22.95736 -21.79217 -21.31447 -20.56615 -18.67828 -17.98841 -17.56866 -17.34295 -16.87639 -16.51956 -16.29769 -16.08860 -15.98303 -15.64350 -15.54847 -15.24070 -15.00160 -14.63954 -14.39447 -14.30395 -14.19357 -13.97614 -13.89432 -13.72007 -13.64299 -13.50382 -13.25975 -13.13373 -12.86602 -12.71255 -12.48035 -12.30909 -12.18126 -12.04755 -11.94612 -11.81760 -11.77785 -11.66385 -11.24883 -10.79542 -10.47285 -9.83475 -9.76892 -9.64051 -9.54672 -9.31609 -8.98191 -8.37044 -6.51088 0.22225 0.49583 0.51614 0.55520 1.20314 1.34382 1.35664 1.46855 1.83111 1.91531 2.31699 2.91721 2.94323 2.95833 3.43266 3.63533 3.88212 3.97681 4.04512 4.10521 4.13843 4.21266 4.24407 4.29069 4.33224 4.36181 4.37668 4.44136 4.60291 4.60589 4.68122 4.69357 4.71401 4.74603 4.79863 4.88425 5.03003 5.04647 5.10901 5.12762 5.20111 5.24222 5.25435 5.29237 5.50342 5.52701 5.62111 5.63456 5.68246 5.69183 5.78577 5.79856 5.87816 6.10531 6.17326 6.18635 6.27080 6.47138 6.60519 6.99296 7.18809 8.70717 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.009228 B = 0.002232 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.385095 B =12544.419687 C =14309.344775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.049 0.951 9 C 0.272 3.728 10 N -0.350 5.350 11 C 0.055 3.945 12 C -0.238 4.238 13 C 0.152 3.848 14 N -0.693 5.693 15 C 0.074 3.926 16 C -0.073 4.073 17 C -0.088 4.088 18 C -0.130 4.130 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.126 4.126 22 C -0.128 4.128 23 C 0.085 3.915 24 C -0.018 4.018 25 C -0.108 4.108 26 C -0.115 4.115 27 C -0.113 4.113 28 C -0.120 4.120 29 C -0.118 4.118 30 N -0.320 5.320 31 H 0.273 0.727 32 H 0.018 0.982 33 H 0.055 0.945 34 H 0.191 0.809 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.337 0.663 38 H 0.072 0.928 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.142 0.858 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.009 -24.140 5.730 30.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.584 4.584 8 H 0.067 0.933 9 C 0.153 3.847 10 N -0.130 5.130 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.023 3.977 14 N -0.324 5.324 15 C -0.055 4.055 16 C -0.111 4.111 17 C -0.089 4.089 18 C -0.148 4.148 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.079 4.079 24 C -0.020 4.020 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.131 4.131 28 C -0.138 4.138 29 C -0.138 4.138 30 N -0.143 5.143 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.208 0.792 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.154 0.846 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.172 0.828 49 H 0.172 0.828 50 H 0.160 0.840 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 16.238 -22.685 5.486 28.431 hybrid contribution 0.057 0.555 -0.186 0.588 sum 16.295 -22.129 5.300 27.988 Atomic orbital electron populations 1.69994 1.07157 1.28785 1.49870 1.25747 0.95891 1.02737 0.93865 0.85358 0.78402 0.78168 0.78570 1.19837 1.19389 1.19784 1.21349 0.93190 0.91017 1.52872 0.93275 1.19275 0.85852 0.81772 0.97776 1.49084 1.24183 1.19945 1.19778 1.22811 1.01021 0.89142 0.96295 1.20000 1.01399 1.03261 1.00319 1.20085 0.92948 0.90837 0.93834 1.60547 1.08147 1.26503 1.37234 1.21853 0.96226 0.90374 0.97018 1.20486 0.96851 0.94406 0.99353 1.19938 0.97327 0.96623 0.94978 1.21288 1.00519 0.97711 0.95273 1.21431 0.97677 0.94703 1.00729 1.21464 0.97788 1.00478 0.95460 1.21434 1.00223 0.96889 0.95870 1.21277 0.97709 0.95255 1.00394 1.21074 0.97002 0.93470 0.96389 1.17947 0.91350 0.93888 0.98777 1.21296 0.99435 0.92683 0.99284 1.21394 0.93140 1.01333 0.97367 1.21568 0.99522 0.92924 0.99116 1.21322 0.97619 0.96489 0.98342 1.21265 0.94652 0.99080 0.98768 1.77560 1.02518 1.18561 1.15697 0.91791 0.96393 0.92709 0.79214 0.89818 0.93396 0.84562 0.90982 0.94753 0.91157 0.90874 0.85607 0.84541 0.84294 0.84346 0.85378 0.85195 0.82787 0.82760 0.84049 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.12 13.29 21.45 0.28 -52.83 16 2 C 0.02 1.02 5.46 84.65 0.46 1.48 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.55 -31.75 9.23 25.60 0.24 -31.51 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 9 C 0.27 14.55 6.26 85.63 0.54 15.08 16 10 N -0.35 -16.74 3.67 -351.91 -1.29 -18.03 16 11 C 0.06 2.15 11.32 83.47 0.95 3.10 16 12 C -0.24 -8.23 5.55 -19.95 -0.11 -8.34 16 13 C 0.15 3.90 5.72 85.56 0.49 4.39 16 14 N -0.69 -17.11 6.52 -517.91 -3.38 -20.49 16 15 C 0.07 1.44 5.66 86.31 0.49 1.92 16 16 C -0.07 -1.34 5.61 29.85 0.17 -1.18 16 17 C -0.09 -1.55 5.13 -19.87 -0.10 -1.65 16 18 C -0.13 -2.18 9.70 22.27 0.22 -1.97 16 19 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 20 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 21 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 22 C -0.13 -2.05 9.70 22.27 0.22 -1.83 16 23 C 0.08 3.31 6.67 42.53 0.28 3.60 16 24 C -0.02 -0.56 5.74 -20.04 -0.12 -0.68 16 25 C -0.11 -2.63 8.86 22.48 0.20 -2.43 16 26 C -0.11 -2.10 10.03 22.24 0.22 -1.88 16 27 C -0.11 -2.01 10.04 22.31 0.22 -1.79 16 28 C -0.12 -2.71 10.03 22.24 0.22 -2.48 16 29 C -0.12 -3.64 9.78 22.48 0.22 -3.42 16 30 N -0.32 -15.43 12.44 -48.15 -0.60 -16.03 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 2.87 8.07 -2.39 -0.02 2.85 16 34 H 0.19 6.07 8.06 -2.91 -0.02 6.05 16 35 H 0.08 1.95 8.13 -2.39 -0.02 1.93 16 36 H 0.05 1.09 5.63 -2.38 -0.01 1.08 16 37 H 0.34 8.99 8.66 -89.69 -0.78 8.22 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.07 1.45 8.08 -2.38 -0.02 1.44 16 42 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 47 H 0.13 2.93 6.19 -2.91 -0.02 2.91 16 48 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 49 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 50 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 51 H 0.10 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -69.49 431.42 2.67 -66.82 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.15 Total: 28.07 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 5.47 Total: -34.30 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -4.98 Total: -107.39 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.49 2.67 -66.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023424894.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.841 kcal (2) G-P(sol) polarization free energy of solvation -69.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds