Wall clock time and date at job start Tue Mar 31 2020 04:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42108 * 110.53924 * 2 1 4 4 O 1.42096 * 110.54494 * 223.24827 * 2 1 3 5 5 C 1.76200 * 104.45014 * 111.61835 * 2 1 3 6 6 C 1.37980 * 120.07201 * 115.02337 * 5 2 1 7 7 C 1.38335 * 120.14325 * 179.97438 * 6 5 2 8 8 C 1.38378 * 120.29950 * 0.02562 * 7 6 5 9 9 C 1.37933 * 120.14580 * 359.71745 * 8 7 6 10 10 C 1.39573 * 120.07732 * 295.00546 * 5 2 1 11 11 C 1.47814 * 120.14368 * 0.02562 * 10 5 2 12 12 O 1.21570 * 120.00018 * 0.02562 * 11 10 5 13 13 N 1.34781 * 119.99624 * 180.02562 * 11 10 5 14 14 C 1.39908 * 119.99408 * 174.78777 * 13 11 10 15 15 C 1.38941 * 120.00611 * 326.10229 * 14 13 11 16 16 C 1.37995 * 119.99543 * 179.74728 * 15 14 13 17 17 C 1.38914 * 120.00197 * 0.50585 * 16 15 14 18 18 O 1.35781 * 119.99574 * 179.74528 * 17 16 15 19 19 C 1.34805 * 117.00270 * 185.94142 * 18 17 16 20 20 H 1.08009 * 119.99870 * 5.40477 * 19 18 17 21 21 C 1.38626 * 120.00400 * 185.40180 * 19 18 17 22 22 N 1.31578 * 120.00316 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00079 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47338 * 89.99332 * 23 21 19 25 25 H 1.48500 * 109.47035 * 209.99916 * 23 21 19 26 26 H 1.48502 * 109.46427 * 329.99483 * 23 21 19 27 27 C 1.38912 * 120.00860 * 359.77146 * 17 16 15 28 28 C 1.37987 * 120.00199 * 359.97321 * 27 17 16 29 29 H 1.08992 * 109.47456 * 308.37362 * 1 2 3 30 30 H 1.09003 * 109.47161 * 68.38275 * 1 2 3 31 31 H 1.09004 * 109.46809 * 188.37687 * 1 2 3 32 32 H 1.08000 * 119.92507 * 0.02562 * 6 5 2 33 33 H 1.08012 * 119.84902 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.92734 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.07167 * 180.29877 * 9 8 7 36 36 H 0.97001 * 120.00142 * 354.50630 * 13 11 10 37 37 H 1.07996 * 120.00084 * 359.97438 * 15 14 13 38 38 H 1.08003 * 119.99949 * 180.23101 * 16 15 14 39 39 H 0.97000 * 120.00081 * 180.02562 * 22 21 19 40 40 H 1.08001 * 119.99674 * 179.97438 * 27 17 16 41 41 H 1.08006 * 120.00374 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6286 1.5862 6 6 2.9153 -1.8347 1.6929 7 6 3.2617 -2.3294 2.9375 8 6 2.9473 -1.6197 4.0830 9 6 2.2907 -0.4102 3.9902 10 6 1.9339 0.0925 2.7377 11 6 1.2250 1.3852 2.6310 12 8 0.9189 1.8222 1.5386 13 7 0.9181 2.0793 3.7448 14 6 0.3458 3.3517 3.6405 15 6 0.7005 4.1891 2.5900 16 6 0.1321 5.4421 2.4844 17 6 -0.7868 5.8702 3.4342 18 8 -1.3422 7.1051 3.3330 19 6 -2.1304 7.5069 4.3501 20 1 -2.2261 6.8936 5.2340 21 6 -2.8181 8.7073 4.2617 22 7 -3.5879 9.0993 5.2543 23 14 -2.6532 9.7679 2.7328 24 1 -3.6966 9.3833 1.7487 25 1 -2.8223 11.1966 3.1008 26 1 -1.3094 9.5667 2.1336 27 6 -1.1373 5.0353 4.4877 28 6 -0.5730 3.7803 4.5906 29 1 -0.3634 0.6379 0.8056 30 1 -0.3633 0.3786 -0.9554 31 1 -0.3633 -1.0168 0.1497 32 1 3.1640 -2.3934 0.8027 33 1 3.7792 -3.2743 3.0154 34 1 3.2202 -2.0117 5.0517 35 1 2.0502 0.1450 4.8849 36 1 1.0901 1.6950 4.6186 37 1 1.4183 3.8580 1.8542 38 1 0.4050 6.0916 1.6659 39 1 -4.0694 9.9390 5.1922 40 1 -1.8514 5.3686 5.2262 41 1 -0.8451 3.1313 5.4099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023692424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:26 Heat of formation + Delta-G solvation = -45.050871 kcal Electronic energy + Delta-G solvation = -29307.980246 eV Core-core repulsion = 25054.603131 eV Total energy + Delta-G solvation = -4253.377115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -40.95710 -39.36895 -38.67148 -37.18040 -36.54838 -35.81245 -34.42736 -32.42394 -31.90147 -31.69441 -30.37230 -29.45232 -28.21671 -25.48855 -24.42601 -23.55760 -22.47028 -21.73501 -20.40158 -19.39844 -18.57291 -17.94480 -17.51284 -17.20455 -16.78845 -16.12857 -15.96485 -15.80315 -15.53895 -15.35777 -14.87931 -14.78527 -14.18812 -13.95819 -13.78053 -13.71677 -13.36544 -13.27502 -12.93316 -12.83321 -12.71200 -12.39157 -12.31581 -12.11712 -12.00677 -11.91776 -11.85412 -11.61861 -11.14169 -10.97369 -10.80690 -10.74464 -10.20631 -10.03687 -9.88328 -9.76620 -9.57189 -9.38667 -8.82547 -8.35269 -7.13788 -6.46374 -4.11938 -0.06533 0.20556 0.56429 1.90750 2.06419 2.54740 2.78813 2.90183 3.19296 3.22223 3.25513 3.40172 3.77307 4.05640 4.19082 4.21337 4.33175 4.42261 4.43597 4.69958 4.76046 4.82978 4.85628 5.03861 5.04759 5.12699 5.26601 5.40753 5.47112 5.58292 5.66314 5.72664 5.75924 5.97928 6.04083 6.12016 6.20228 6.60388 6.70354 6.79347 6.99525 7.16661 7.39774 7.50835 7.71818 7.93227 8.02029 8.88888 9.50940 10.60950 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.002368 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.705950 B =11819.125139 C =12890.800527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.511 3.489 3 O -0.905 6.905 4 O -0.959 6.959 5 C -0.611 4.611 6 C -0.030 4.030 7 C -0.118 4.118 8 C -0.075 4.075 9 C -0.106 4.106 10 C -0.040 4.040 11 C 0.526 3.474 12 O -0.498 6.498 13 N -0.641 5.641 14 C 0.035 3.965 15 C -0.065 4.065 16 C -0.176 4.176 17 C 0.155 3.845 18 O -0.213 6.213 19 C -0.389 4.389 20 H 0.106 0.894 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.258 1.258 27 C -0.208 4.208 28 C -0.087 4.087 29 H 0.150 0.850 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.403 0.597 37 H 0.136 0.864 38 H 0.123 0.877 39 H 0.280 0.720 40 H 0.138 0.862 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.045 -24.645 -2.249 27.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.688 3.312 3 O -0.902 6.902 4 O -0.957 6.957 5 C -0.696 4.696 6 C -0.049 4.049 7 C -0.137 4.137 8 C -0.093 4.093 9 C -0.126 4.126 10 C -0.043 4.043 11 C 0.314 3.686 12 O -0.376 6.376 13 N -0.285 5.285 14 C -0.057 4.057 15 C -0.085 4.085 16 C -0.196 4.196 17 C 0.102 3.898 18 O -0.118 6.118 19 C -0.465 4.465 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.182 1.182 27 C -0.227 4.227 28 C -0.108 4.108 29 H 0.168 0.832 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.240 0.760 37 H 0.154 0.846 38 H 0.141 0.859 39 H 0.090 0.910 40 H 0.156 0.844 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.282 -23.719 -3.710 26.527 hybrid contribution -0.483 -0.087 1.022 1.134 sum 10.799 -23.807 -2.688 26.279 Atomic orbital electron populations 1.30368 1.24807 1.10927 1.13171 1.05029 0.78342 0.74594 0.73281 1.93652 1.77129 1.34778 1.84620 1.93533 1.78454 1.62969 1.60714 1.31001 1.11907 1.05415 1.21231 1.21070 0.92162 0.92380 0.99303 1.21540 0.99328 1.00434 0.92355 1.21427 0.94825 0.93716 0.99363 1.21459 0.98134 0.96464 0.96531 1.19586 0.97555 0.93591 0.93608 1.18418 0.80630 0.84305 0.85249 1.90859 1.51978 1.69398 1.25337 1.42975 1.60695 1.16438 1.08407 1.17247 1.02112 0.85003 1.01346 1.20767 0.98782 0.91743 0.97190 1.20151 1.01072 0.97190 1.01204 1.19204 0.92237 0.84991 0.93332 1.83603 1.57256 1.26725 1.44223 1.20753 1.23768 1.06537 0.95406 0.87624 1.24477 0.94453 0.96653 0.98416 1.69652 1.27510 1.22979 1.31415 0.86177 0.80095 0.78670 0.81992 1.19850 1.20755 1.18199 1.21083 1.05338 0.94483 1.01841 1.20505 0.95373 0.96445 0.98429 0.83202 0.85270 0.86439 0.83044 0.84485 0.84462 0.84584 0.76042 0.84608 0.85906 0.90988 0.84420 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.04 10.14 101.05 1.02 -5.02 16 2 S 2.51 29.47 5.14 -107.50 -0.55 28.92 16 3 O -0.90 -14.41 14.84 -67.50 -1.00 -15.41 16 4 O -0.96 -12.50 16.74 -57.54 -0.96 -13.46 16 5 C -0.61 -6.30 5.61 -39.18 -0.22 -6.52 16 6 C -0.03 -0.25 9.49 -39.64 -0.38 -0.63 16 7 C -0.12 -0.71 10.04 -39.49 -0.40 -1.11 16 8 C -0.08 -0.42 10.03 -39.64 -0.40 -0.82 16 9 C -0.11 -0.77 9.54 -39.18 -0.37 -1.14 16 10 C -0.04 -0.41 5.86 -104.97 -0.62 -1.02 16 11 C 0.53 6.79 7.09 -12.34 -0.09 6.70 16 12 O -0.50 -7.68 6.78 -19.81 -0.13 -7.82 16 13 N -0.64 -7.82 5.28 -10.68 -0.06 -7.87 16 14 C 0.03 0.56 6.27 -83.65 -0.52 0.04 16 15 C -0.07 -1.19 8.64 -39.41 -0.34 -1.53 16 16 C -0.18 -3.56 9.98 -39.42 -0.39 -3.95 16 17 C 0.16 3.49 6.65 -39.08 -0.26 3.23 16 18 O -0.21 -5.52 8.58 0.03 0.00 -5.52 16 19 C -0.39 -10.69 9.90 30.88 0.31 -10.38 16 20 H 0.11 2.93 5.53 -52.48 -0.29 2.64 16 21 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 22 N -0.88 -24.89 13.96 55.48 0.77 -24.11 16 23 Si 0.91 21.46 28.62 -169.99 -4.86 16.60 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 27 C -0.21 -4.22 9.12 -39.42 -0.36 -4.58 16 28 C -0.09 -1.44 9.96 -39.41 -0.39 -1.83 16 29 H 0.15 1.64 5.41 -51.93 -0.28 1.36 16 30 H 0.13 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.12 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.15 1.08 7.21 -52.49 -0.38 0.70 16 33 H 0.14 0.44 8.06 -52.48 -0.42 0.01 16 34 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.14 0.62 6.42 -52.48 -0.34 0.29 16 36 H 0.40 3.37 6.87 -40.82 -0.28 3.09 16 37 H 0.14 2.48 6.45 -52.49 -0.34 2.15 16 38 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 39 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.14 2.92 5.71 -52.49 -0.30 2.62 16 41 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -35.40 355.51 -8.82 -44.22 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -3.88 Total: 6.01 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -3.50 Total: -26.90 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.72 Total: -31.99 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -2.10 Total: -42.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.86 Total: 16.60 kcal Atomic # 16 Polarization: 29.47 SS G_CDS: -0.55 Total: 28.92 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.40 -8.82 -44.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023692424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.830 kcal (2) G-P(sol) polarization free energy of solvation -35.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds