Wall clock time and date at job start Tue Mar 31 2020 04:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42108 * 110.53924 * 2 1 4 4 O 1.42096 * 110.54494 * 223.24827 * 2 1 3 5 5 C 1.76200 * 104.45014 * 111.61835 * 2 1 3 6 6 C 1.37980 * 120.07201 * 115.02337 * 5 2 1 7 7 C 1.38335 * 120.14325 * 179.97438 * 6 5 2 8 8 C 1.38378 * 120.29950 * 0.02562 * 7 6 5 9 9 C 1.37933 * 120.14580 * 359.71745 * 8 7 6 10 10 C 1.39573 * 120.07732 * 295.00546 * 5 2 1 11 11 C 1.47814 * 120.14368 * 0.02562 * 10 5 2 12 12 O 1.21570 * 120.00018 * 0.02562 * 11 10 5 13 13 N 1.34781 * 119.99624 * 180.02562 * 11 10 5 14 14 C 1.39908 * 119.99408 * 174.78777 * 13 11 10 15 15 C 1.38941 * 120.00611 * 326.10229 * 14 13 11 16 16 C 1.37995 * 119.99543 * 179.74728 * 15 14 13 17 17 C 1.38914 * 120.00197 * 0.50585 * 16 15 14 18 18 O 1.35781 * 119.99574 * 179.74528 * 17 16 15 19 19 C 1.34805 * 117.00270 * 185.94142 * 18 17 16 20 20 H 1.08009 * 119.99870 * 5.40477 * 19 18 17 21 21 C 1.38626 * 120.00400 * 185.40180 * 19 18 17 22 22 N 1.31578 * 120.00316 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00079 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47338 * 89.99332 * 23 21 19 25 25 H 1.48500 * 109.47035 * 209.99916 * 23 21 19 26 26 H 1.48502 * 109.46427 * 329.99483 * 23 21 19 27 27 C 1.38912 * 120.00860 * 359.77146 * 17 16 15 28 28 C 1.37987 * 120.00199 * 359.97321 * 27 17 16 29 29 H 1.08992 * 109.47456 * 308.37362 * 1 2 3 30 30 H 1.09003 * 109.47161 * 68.38275 * 1 2 3 31 31 H 1.09004 * 109.46809 * 188.37687 * 1 2 3 32 32 H 1.08000 * 119.92507 * 0.02562 * 6 5 2 33 33 H 1.08012 * 119.84902 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.92734 * 179.97438 * 8 7 6 35 35 H 1.08007 * 120.07167 * 180.29877 * 9 8 7 36 36 H 0.97001 * 120.00142 * 354.50630 * 13 11 10 37 37 H 1.07996 * 120.00084 * 359.97438 * 15 14 13 38 38 H 1.08003 * 119.99949 * 180.23101 * 16 15 14 39 39 H 0.97000 * 120.00081 * 180.02562 * 22 21 19 40 40 H 1.08001 * 119.99674 * 179.97438 * 27 17 16 41 41 H 1.08006 * 120.00374 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6286 1.5862 6 6 2.9153 -1.8347 1.6929 7 6 3.2617 -2.3294 2.9375 8 6 2.9473 -1.6197 4.0830 9 6 2.2907 -0.4102 3.9902 10 6 1.9339 0.0925 2.7377 11 6 1.2250 1.3852 2.6310 12 8 0.9189 1.8222 1.5386 13 7 0.9181 2.0793 3.7448 14 6 0.3458 3.3517 3.6405 15 6 0.7005 4.1891 2.5900 16 6 0.1321 5.4421 2.4844 17 6 -0.7868 5.8702 3.4342 18 8 -1.3422 7.1051 3.3330 19 6 -2.1304 7.5069 4.3501 20 1 -2.2261 6.8936 5.2340 21 6 -2.8181 8.7073 4.2617 22 7 -3.5879 9.0993 5.2543 23 14 -2.6532 9.7679 2.7328 24 1 -3.6966 9.3833 1.7487 25 1 -2.8223 11.1966 3.1008 26 1 -1.3094 9.5667 2.1336 27 6 -1.1373 5.0353 4.4877 28 6 -0.5730 3.7803 4.5906 29 1 -0.3634 0.6379 0.8056 30 1 -0.3633 0.3786 -0.9554 31 1 -0.3633 -1.0168 0.1497 32 1 3.1640 -2.3934 0.8027 33 1 3.7792 -3.2743 3.0154 34 1 3.2202 -2.0117 5.0517 35 1 2.0502 0.1450 4.8849 36 1 1.0901 1.6950 4.6186 37 1 1.4183 3.8580 1.8542 38 1 0.4050 6.0916 1.6659 39 1 -4.0694 9.9390 5.1922 40 1 -1.8514 5.3686 5.2262 41 1 -0.8451 3.1313 5.4099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023692424.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:25 Heat of formation + Delta-G solvation = -69.989351 kcal Electronic energy + Delta-G solvation = -29309.061660 eV Core-core repulsion = 25054.603131 eV Total energy + Delta-G solvation = -4254.458529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97597 -40.75900 -39.65694 -38.47338 -37.72861 -36.82471 -35.68672 -34.38209 -32.62520 -32.33416 -31.91122 -30.26298 -29.63472 -27.26209 -25.38615 -24.15961 -23.99279 -22.97712 -21.64279 -20.27125 -19.82208 -19.40058 -19.13823 -18.17560 -17.97811 -17.06346 -16.89043 -16.71091 -16.59143 -16.46014 -15.98273 -15.78317 -15.60492 -15.57923 -15.28447 -14.80076 -14.46440 -14.18779 -14.14680 -14.02339 -13.94639 -13.74647 -13.40829 -13.34669 -13.23578 -12.99667 -12.87064 -12.72770 -12.61621 -12.51064 -11.99420 -11.98066 -11.60542 -11.45474 -11.17895 -10.97631 -10.66219 -10.45003 -10.16942 -9.88013 -8.69510 -8.49287 -6.19734 -0.82366 -0.57391 -0.00346 0.48673 0.51921 1.32642 1.35249 1.52684 1.64908 1.85997 1.99270 2.28904 2.49840 2.76285 2.95246 3.09522 3.10962 3.28172 3.46658 3.71925 3.94877 4.02897 4.07765 4.11387 4.17369 4.24682 4.40846 4.46121 4.47075 4.56050 4.67864 4.75045 4.89442 4.98845 5.06508 5.12715 5.16565 5.26726 5.35980 5.47983 5.52685 5.71251 5.76435 5.88093 6.16516 6.31975 6.85791 6.97054 7.60385 8.61871 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.019376 B = 0.002368 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.705950 B =11819.125139 C =12890.800527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.509 3.491 3 O -0.958 6.958 4 O -0.983 6.983 5 C -0.621 4.621 6 C -0.044 4.044 7 C -0.107 4.107 8 C -0.067 4.067 9 C -0.100 4.100 10 C -0.063 4.063 11 C 0.525 3.475 12 O -0.525 6.525 13 N -0.634 5.634 14 C 0.070 3.930 15 C -0.074 4.074 16 C -0.177 4.177 17 C 0.117 3.883 18 O -0.245 6.245 19 C -0.395 4.395 20 H 0.089 0.911 21 C 0.013 3.987 22 N -0.920 5.920 23 Si 0.964 3.036 24 H -0.268 1.268 25 H -0.267 1.267 26 H -0.265 1.265 27 C -0.213 4.213 28 C -0.077 4.077 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.178 0.822 35 H 0.165 0.835 36 H 0.426 0.574 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.284 0.716 40 H 0.124 0.876 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.507 -28.579 -0.986 31.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.692 3.308 3 O -0.956 6.956 4 O -0.980 6.980 5 C -0.709 4.709 6 C -0.062 4.062 7 C -0.125 4.125 8 C -0.084 4.084 9 C -0.119 4.119 10 C -0.067 4.067 11 C 0.314 3.686 12 O -0.404 6.404 13 N -0.280 5.280 14 C -0.023 4.023 15 C -0.093 4.093 16 C -0.197 4.197 17 C 0.068 3.932 18 O -0.152 6.152 19 C -0.472 4.472 20 H 0.106 0.894 21 C -0.186 4.186 22 N -0.561 5.561 23 Si 0.787 3.213 24 H -0.193 1.193 25 H -0.192 1.192 26 H -0.190 1.190 27 C -0.233 4.233 28 C -0.097 4.097 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.189 0.811 34 H 0.195 0.805 35 H 0.182 0.818 36 H 0.267 0.733 37 H 0.154 0.846 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.141 0.859 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.794 -27.710 -2.466 30.620 hybrid contribution -0.708 0.618 0.658 1.148 sum 12.085 -27.092 -1.808 29.720 Atomic orbital electron populations 1.30242 1.22176 1.12785 1.13287 1.04586 0.79167 0.73314 0.73754 1.93589 1.78802 1.37342 1.85821 1.93493 1.79496 1.62862 1.62176 1.30581 1.13771 1.06662 1.19866 1.21303 0.92226 0.91815 1.00906 1.22010 0.97773 1.01389 0.91364 1.21936 0.92946 0.92580 1.00977 1.21854 0.96963 0.97100 0.95984 1.19366 0.99567 0.92677 0.95066 1.18947 0.79856 0.85172 0.84631 1.90869 1.52699 1.70307 1.26546 1.42851 1.60523 1.14848 1.09801 1.17299 0.99842 0.85941 0.99242 1.20858 0.98912 0.91387 0.98187 1.20280 1.00566 0.98024 1.00803 1.19614 0.93534 0.84932 0.95155 1.83548 1.58818 1.28783 1.44067 1.20725 1.24064 1.06718 0.95659 0.89405 1.25193 0.94469 0.97847 1.01102 1.69721 1.29287 1.23961 1.33131 0.85308 0.79517 0.77761 0.78737 1.19335 1.19183 1.18959 1.21149 1.05416 0.95835 1.00871 1.20802 0.94092 0.95305 0.99493 0.84324 0.84370 0.83293 0.82653 0.81084 0.80473 0.81769 0.73344 0.84621 0.85792 0.90607 0.85860 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -11.32 10.14 113.37 1.15 -10.17 16 2 S 2.51 58.97 5.14 -56.49 -0.29 58.68 16 3 O -0.96 -31.67 14.84 -118.13 -1.75 -33.43 16 4 O -0.98 -25.79 16.74 -127.65 -2.14 -27.93 16 5 C -0.62 -11.73 5.61 22.53 0.13 -11.60 16 6 C -0.04 -0.60 9.49 22.23 0.21 -0.39 16 7 C -0.11 -0.76 10.04 22.33 0.22 -0.54 16 8 C -0.07 -0.36 10.03 22.23 0.22 -0.14 16 9 C -0.10 -0.95 9.54 22.53 0.21 -0.74 16 10 C -0.06 -1.12 5.86 -20.09 -0.12 -1.24 16 11 C 0.52 12.47 7.09 86.78 0.62 13.08 16 12 O -0.52 -15.92 6.78 20.07 0.14 -15.78 16 13 N -0.63 -13.38 5.28 -305.98 -1.62 -14.99 16 14 C 0.07 2.11 6.27 38.19 0.24 2.35 16 15 C -0.07 -2.65 8.64 22.38 0.19 -2.45 16 16 C -0.18 -7.29 9.98 22.37 0.22 -7.06 16 17 C 0.12 5.44 6.65 22.59 0.15 5.59 16 18 O -0.24 -13.24 8.58 -22.82 -0.20 -13.43 16 19 C -0.40 -22.79 9.90 67.91 0.67 -22.12 16 20 H 0.09 5.18 5.53 -2.91 -0.02 5.16 16 21 C 0.01 0.72 5.49 84.82 0.47 1.19 16 22 N -0.92 -54.10 13.96 21.61 0.30 -53.80 16 23 Si 0.96 45.61 28.62 68.60 1.96 47.58 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 27 C -0.21 -8.72 9.12 22.37 0.20 -8.52 16 28 C -0.08 -2.36 9.96 22.38 0.22 -2.14 16 29 H 0.14 2.93 5.41 -2.39 -0.01 2.92 16 30 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.16 1.92 7.21 -2.91 -0.02 1.90 16 33 H 0.17 0.07 8.06 -2.90 -0.02 0.04 16 34 H 0.18 -0.37 8.06 -2.91 -0.02 -0.39 16 35 H 0.16 0.52 6.42 -2.91 -0.02 0.50 16 36 H 0.43 5.09 6.87 -92.71 -0.64 4.45 16 37 H 0.14 4.97 6.45 -2.91 -0.02 4.95 16 38 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 39 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.12 5.42 5.71 -2.91 -0.02 5.40 16 41 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -82.89 355.51 1.90 -80.99 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.48 Total: 17.00 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 5.02 Total: -44.89 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: -1.31 Total: -68.79 kcal Atomic # 8 Polarization: -86.62 SS G_CDS: -3.95 Total: -90.57 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.96 Total: 47.58 kcal Atomic # 16 Polarization: 58.97 SS G_CDS: -0.29 Total: 58.68 kcal Total: -82.89 1.90 -80.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023692424.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.000 kcal (2) G-P(sol) polarization free energy of solvation -82.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds