Wall clock time and date at job start Tue Mar 31 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89965 * 2 1 4 4 N 1.40091 * 108.20322 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03223 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47304 * 90.02275 * 5 4 3 7 7 H 1.07993 * 119.99641 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00506 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46757 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47088 * 120.00178 * 10 8 6 13 13 H 1.48505 * 109.47181 * 240.00596 * 10 8 6 14 14 C 1.34943 * 107.92530 * 359.75682 * 4 3 2 15 15 C 1.50699 * 126.12512 * 180.23998 * 14 4 3 16 16 C 1.35311 * 107.74928 * 0.39029 * 14 4 3 17 17 C 1.50701 * 126.04261 * 179.87298 * 16 14 4 18 18 C 1.52997 * 109.47212 * 269.71507 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.46505 * 120.00115 * 180.02562 * 21 19 18 23 23 H 1.08997 * 109.46680 * 34.99949 * 22 21 19 24 24 C 1.52995 * 109.46662 * 274.99892 * 22 21 19 25 25 C 1.50696 * 109.46926 * 155.00146 * 22 21 19 26 26 C 1.33398 * 125.20147 * 219.72060 * 25 22 21 27 27 C 1.38423 * 114.92073 * 179.85983 * 26 25 22 28 28 C 1.33394 * 114.92092 * 0.42888 * 27 26 25 29 29 S 1.75881 * 109.59256 * 359.76889 * 28 27 26 30 30 H 1.08992 * 109.47376 * 269.97432 * 1 2 3 31 31 H 1.09003 * 109.46949 * 29.97771 * 1 2 3 32 32 H 1.09001 * 109.47332 * 149.97579 * 1 2 3 33 33 H 1.09006 * 109.46820 * 210.02240 * 5 4 3 34 34 H 1.08996 * 109.47479 * 330.02113 * 5 4 3 35 35 H 0.96996 * 120.00710 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47581 * 270.17846 * 15 14 4 37 37 H 1.08996 * 109.47395 * 30.17544 * 15 14 4 38 38 H 1.09003 * 109.47313 * 150.17721 * 15 14 4 39 39 H 1.09002 * 109.47060 * 29.71562 * 17 16 14 40 40 H 1.09001 * 109.47380 * 149.71650 * 17 16 14 41 41 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 42 42 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 43 43 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 44 44 H 1.08997 * 109.47619 * 299.99482 * 24 22 21 45 45 H 1.08998 * 109.47402 * 60.00125 * 24 22 21 46 46 H 1.09004 * 109.46813 * 180.02562 * 24 22 21 47 47 H 1.07998 * 122.53509 * 0.02562 * 26 25 22 48 48 H 1.08001 * 122.53878 * 180.19721 * 27 26 25 49 49 H 1.07997 * 125.20412 * 179.75565 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6304 1.3801 2.2413 8 6 6.2888 2.5977 1.6729 9 7 6.9775 3.1044 0.6735 10 14 6.7922 2.9638 3.4342 11 1 5.8617 2.2791 4.3673 12 1 8.1746 2.4736 3.6660 13 1 6.7405 4.4292 3.6694 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5990 0.0109 16 6 2.3272 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0003 18 6 1.7014 -3.0509 -1.4427 19 6 1.2347 -4.4837 -1.4425 20 8 1.0469 -5.0602 -0.3920 21 7 1.0261 -5.1247 -2.6096 22 6 0.5718 -6.5176 -2.6093 23 1 -0.1014 -6.6800 -1.7676 24 6 1.7799 -7.4478 -2.4831 25 6 -0.1544 -6.8093 -3.8971 26 6 -1.2581 -7.5504 -4.0066 27 6 -1.7501 -7.6773 -5.2942 28 6 -1.0408 -7.0467 -6.2316 29 16 0.3277 -6.2310 -5.4866 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 5.6091 0.9985 -0.5150 34 1 4.5561 2.4336 -0.5130 35 1 7.7464 3.6684 0.8508 36 1 5.1338 -1.8133 -1.0152 37 1 5.6489 -1.0904 0.5276 38 1 4.6053 -2.5323 0.5249 39 1 2.5935 -3.1872 0.5134 40 1 0.9012 -2.6353 0.5137 41 1 0.9678 -2.4295 -1.9564 42 1 2.6600 -2.9814 -1.9568 43 1 1.1767 -4.6638 -3.4497 44 1 2.4531 -7.2855 -3.3248 45 1 2.3053 -7.2368 -1.5516 46 1 1.4420 -8.4842 -2.4833 47 1 -1.7334 -8.0140 -3.1548 48 1 -2.6386 -8.2470 -5.5231 49 1 -1.2715 -7.0385 -7.2866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024049419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:43 Heat of formation + Delta-G solvation = 45.245414 kcal Electronic energy + Delta-G solvation = -28877.985670 eV Core-core repulsion = 24932.483036 eV Total energy + Delta-G solvation = -3945.502634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62823 -39.96776 -38.33636 -35.75494 -34.37542 -33.38222 -32.47392 -31.72748 -30.10678 -28.96068 -28.82734 -26.77222 -25.87622 -24.96281 -23.89668 -22.52712 -21.86399 -20.80628 -19.41627 -18.79807 -18.63127 -18.09951 -16.93360 -16.69471 -15.90462 -15.79409 -15.64263 -15.33764 -14.52187 -14.39530 -14.34763 -13.88815 -13.76452 -13.42270 -13.17265 -13.09281 -12.90491 -12.81073 -12.62601 -12.55768 -12.53061 -12.27114 -12.23464 -12.06065 -11.84107 -11.75403 -11.60718 -11.35343 -11.21179 -11.10493 -10.92606 -10.82684 -10.72211 -10.26432 -9.94650 -9.70802 -9.60245 -9.44879 -9.09941 -8.91236 -8.65723 -8.16904 -7.46789 -6.26892 -4.34294 0.51980 1.13807 1.53563 2.27439 2.57371 2.75822 2.98403 3.19654 3.27689 3.33555 3.41533 3.63390 4.12578 4.29395 4.63322 4.70433 4.84380 4.94478 5.04011 5.06669 5.12790 5.20116 5.27453 5.33983 5.35700 5.40129 5.51978 5.63893 5.69685 5.76193 5.79960 5.86701 5.87190 5.96629 5.97712 5.98026 6.01970 6.06006 6.19752 6.25431 6.38651 6.49888 6.55275 6.89349 7.02289 7.12062 7.25123 7.52602 7.66404 7.88162 8.06440 8.09294 8.67573 8.76176 9.32420 10.80606 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.001735 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.107611 B =16137.161311 C =16276.177309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.256 3.744 6 C -0.535 4.535 7 H 0.064 0.936 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.905 3.095 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.094 3.906 15 C -0.091 4.091 16 C -0.269 4.269 17 C -0.010 4.010 18 C -0.134 4.134 19 C 0.518 3.482 20 O -0.536 6.536 21 N -0.734 5.734 22 C 0.214 3.786 23 H 0.105 0.895 24 C -0.160 4.160 25 C -0.186 4.186 26 C -0.128 4.128 27 C -0.133 4.133 28 C -0.211 4.211 29 S 0.105 5.895 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.398 0.602 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.142 0.858 48 H 0.142 0.858 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -22.671 -13.862 30.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.732 3.268 11 H -0.195 1.195 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.037 4.037 15 C -0.150 4.150 16 C -0.281 4.281 17 C -0.049 4.049 18 C -0.174 4.174 19 C 0.305 3.695 20 O -0.412 6.412 21 N -0.388 5.388 22 C 0.108 3.892 23 H 0.123 0.877 24 C -0.218 4.218 25 C -0.304 4.304 26 C -0.159 4.159 27 C -0.164 4.164 28 C -0.347 4.347 29 S 0.368 5.632 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.233 0.767 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.160 0.840 48 H 0.159 0.841 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.746 -20.659 -13.697 27.872 hybrid contribution -0.697 -1.143 0.794 1.556 sum -13.444 -21.801 -12.904 28.680 Atomic orbital electron populations 1.20018 0.88074 1.02048 1.02125 1.21948 0.96096 0.90775 1.02566 1.77268 0.87536 1.22673 1.24598 1.49244 1.05740 1.04190 1.51306 1.19655 0.77975 0.89599 0.98905 1.21359 1.12942 1.31665 0.91403 0.91730 1.24933 0.95742 0.95016 0.98125 1.69928 1.19044 1.33026 1.30975 0.86309 0.78398 0.78304 0.83745 1.19549 1.20647 1.20624 1.20765 0.96117 0.85668 1.01185 1.20401 0.94429 0.97819 1.02306 1.19351 0.91380 0.95065 1.22306 1.19390 1.01620 0.90876 0.92997 1.21769 1.03119 0.90979 1.01533 1.21083 0.76166 0.89217 0.82984 1.90698 1.50762 1.68617 1.31106 1.46302 1.70213 1.12940 1.09318 1.19281 0.95350 0.81916 0.92675 0.87692 1.22207 0.97411 0.99162 1.03044 1.24715 1.01473 1.06250 0.97987 1.20134 0.96017 1.01264 0.98461 1.20190 1.01845 1.02342 0.92009 1.25671 0.99965 1.05367 1.03677 1.84293 1.28095 1.52274 0.98521 0.91396 0.91648 0.91457 0.93096 0.93063 0.92317 0.91288 0.89991 0.90678 0.91352 0.91278 0.88919 0.88930 0.76700 0.92186 0.91006 0.91308 0.84004 0.84068 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.12 36.01 0.36 -0.55 16 2 C 0.05 0.96 7.22 -82.40 -0.59 0.37 16 3 N -0.30 -6.83 12.58 33.67 0.42 -6.41 16 4 N -0.33 -7.58 3.60 -58.32 -0.21 -7.79 16 5 C 0.26 6.58 5.81 -5.19 -0.03 6.55 16 6 C -0.54 -14.81 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 10 Si 0.91 21.24 29.54 -169.99 -5.02 16.21 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 14 C 0.09 1.86 6.93 -82.27 -0.57 1.29 16 15 C -0.09 -1.49 9.68 36.01 0.35 -1.14 16 16 C -0.27 -4.78 5.35 -105.05 -0.56 -5.34 16 17 C -0.01 -0.14 4.45 -27.88 -0.12 -0.26 16 18 C -0.13 -1.51 5.68 -27.89 -0.16 -1.67 16 19 C 0.52 5.96 7.79 -10.99 -0.09 5.88 16 20 O -0.54 -7.95 15.65 5.55 0.09 -7.86 16 21 N -0.73 -6.57 5.06 -54.93 -0.28 -6.85 16 22 C 0.21 1.81 3.00 -69.08 -0.21 1.60 16 23 H 0.11 1.00 7.56 -51.93 -0.39 0.61 16 24 C -0.16 -1.26 9.47 37.15 0.35 -0.90 16 25 C -0.19 -1.40 5.45 -36.00 -0.20 -1.60 16 26 C -0.13 -0.88 10.04 -41.20 -0.41 -1.29 16 27 C -0.13 -0.82 10.18 -41.21 -0.42 -1.24 16 28 C -0.21 -1.28 11.23 29.04 0.33 -0.95 16 29 S 0.10 0.70 22.31 -107.50 -2.40 -1.69 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.80 7.92 -51.93 -0.41 0.38 16 33 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 34 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.48 7.74 -51.93 -0.40 1.08 16 38 H 0.07 1.06 7.14 -51.93 -0.37 0.69 16 39 H 0.07 1.00 7.10 -51.93 -0.37 0.63 16 40 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.40 2.93 7.68 -40.82 -0.31 2.62 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 49 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 424.84 15.07 6.40 6.40 Total: -1.00 -32.54 424.84 -10.33 -42.88 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.68 Total: 2.22 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.39 Total: -12.72 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.67 Total: -45.43 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.09 Total: -7.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.40 Total: -1.69 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -32.54 -10.33 -42.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.121 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds