Wall clock time and date at job start Tue Mar 31 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89965 * 2 1 4 4 N 1.40091 * 108.20322 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03223 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47304 * 90.02275 * 5 4 3 7 7 H 1.07993 * 119.99641 * 0.02562 * 6 5 4 8 8 C 1.37872 * 119.99974 * 179.97438 * 6 5 4 9 9 N 1.31520 * 120.00506 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00116 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46757 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47088 * 120.00178 * 10 8 6 13 13 H 1.48505 * 109.47181 * 240.00596 * 10 8 6 14 14 C 1.34943 * 107.92530 * 359.75682 * 4 3 2 15 15 C 1.50699 * 126.12512 * 180.23998 * 14 4 3 16 16 C 1.35311 * 107.74928 * 0.39029 * 14 4 3 17 17 C 1.50701 * 126.04261 * 179.87298 * 16 14 4 18 18 C 1.52997 * 109.47212 * 269.71507 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 O 1.21288 * 120.00038 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00369 * 180.02562 * 19 18 17 22 22 C 1.46505 * 120.00115 * 180.02562 * 21 19 18 23 23 H 1.08997 * 109.46680 * 34.99949 * 22 21 19 24 24 C 1.52995 * 109.46662 * 274.99892 * 22 21 19 25 25 C 1.50696 * 109.46926 * 155.00146 * 22 21 19 26 26 C 1.33398 * 125.20147 * 219.72060 * 25 22 21 27 27 C 1.38423 * 114.92073 * 179.85983 * 26 25 22 28 28 C 1.33394 * 114.92092 * 0.42888 * 27 26 25 29 29 S 1.75881 * 109.59256 * 359.76889 * 28 27 26 30 30 H 1.08992 * 109.47376 * 269.97432 * 1 2 3 31 31 H 1.09003 * 109.46949 * 29.97771 * 1 2 3 32 32 H 1.09001 * 109.47332 * 149.97579 * 1 2 3 33 33 H 1.09006 * 109.46820 * 210.02240 * 5 4 3 34 34 H 1.08996 * 109.47479 * 330.02113 * 5 4 3 35 35 H 0.96996 * 120.00710 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.47581 * 270.17846 * 15 14 4 37 37 H 1.08996 * 109.47395 * 30.17544 * 15 14 4 38 38 H 1.09003 * 109.47313 * 150.17721 * 15 14 4 39 39 H 1.09002 * 109.47060 * 29.71562 * 17 16 14 40 40 H 1.09001 * 109.47380 * 149.71650 * 17 16 14 41 41 H 1.09002 * 109.47153 * 299.99998 * 18 17 16 42 42 H 1.08998 * 109.47533 * 59.99628 * 18 17 16 43 43 H 0.97003 * 119.99640 * 0.02562 * 21 19 18 44 44 H 1.08997 * 109.47619 * 299.99482 * 24 22 21 45 45 H 1.08998 * 109.47402 * 60.00125 * 24 22 21 46 46 H 1.09004 * 109.46813 * 180.02562 * 24 22 21 47 47 H 1.07998 * 122.53509 * 0.02562 * 26 25 22 48 48 H 1.08001 * 122.53878 * 180.19721 * 27 26 25 49 49 H 1.07997 * 125.20412 * 179.75565 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6304 1.3801 2.2413 8 6 6.2888 2.5977 1.6729 9 7 6.9775 3.1044 0.6735 10 14 6.7922 2.9638 3.4342 11 1 5.8617 2.2791 4.3673 12 1 8.1746 2.4736 3.6660 13 1 6.7405 4.4292 3.6694 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5990 0.0109 16 6 2.3272 -1.1331 -0.0006 17 6 1.8599 -2.5658 -0.0003 18 6 1.7014 -3.0509 -1.4427 19 6 1.2347 -4.4837 -1.4425 20 8 1.0469 -5.0602 -0.3920 21 7 1.0261 -5.1247 -2.6096 22 6 0.5718 -6.5176 -2.6093 23 1 -0.1014 -6.6800 -1.7676 24 6 1.7799 -7.4478 -2.4831 25 6 -0.1544 -6.8093 -3.8971 26 6 -1.2581 -7.5504 -4.0066 27 6 -1.7501 -7.6773 -5.2942 28 6 -1.0408 -7.0467 -6.2316 29 16 0.3277 -6.2310 -5.4866 30 1 -0.3634 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 5.6091 0.9985 -0.5150 34 1 4.5561 2.4336 -0.5130 35 1 7.7464 3.6684 0.8508 36 1 5.1338 -1.8133 -1.0152 37 1 5.6489 -1.0904 0.5276 38 1 4.6053 -2.5323 0.5249 39 1 2.5935 -3.1872 0.5134 40 1 0.9012 -2.6353 0.5137 41 1 0.9678 -2.4295 -1.9564 42 1 2.6600 -2.9814 -1.9568 43 1 1.1767 -4.6638 -3.4497 44 1 2.4531 -7.2855 -3.3248 45 1 2.3053 -7.2368 -1.5516 46 1 1.4420 -8.4842 -2.4833 47 1 -1.7334 -8.0140 -3.1548 48 1 -2.6386 -8.2470 -5.5231 49 1 -1.2715 -7.0385 -7.2866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024049419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:42 Heat of formation + Delta-G solvation = 26.924864 kcal Electronic energy + Delta-G solvation = -28878.780109 eV Core-core repulsion = 24932.483036 eV Total energy + Delta-G solvation = -3946.297073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.14395 -40.86926 -38.89275 -36.52074 -36.04775 -34.84013 -34.17757 -32.60191 -31.44053 -30.45894 -29.39124 -28.07339 -27.61333 -25.78557 -25.05685 -23.95764 -22.76221 -21.59577 -20.30575 -20.13285 -20.00306 -18.83819 -18.71726 -17.78766 -17.23222 -16.60881 -16.50811 -16.30591 -16.18608 -15.89390 -15.16255 -15.00074 -14.72061 -14.58860 -14.41308 -14.16028 -14.02626 -13.85708 -13.69264 -13.57104 -13.42881 -13.28715 -13.21957 -13.18385 -13.09224 -12.89088 -12.84377 -12.71710 -12.62701 -12.56253 -12.37034 -12.23354 -11.85937 -11.69466 -11.61538 -11.15195 -10.86824 -10.75858 -10.23303 -9.82554 -9.62363 -9.39915 -9.01844 -8.35384 -6.53191 0.02570 0.64393 1.05686 1.18621 1.34033 1.36149 1.48626 1.66922 1.78504 1.91404 1.95534 2.30005 2.32755 2.93801 3.53764 3.78609 3.91767 3.96720 4.17204 4.24042 4.26594 4.28608 4.29777 4.35071 4.57906 4.61301 4.67077 4.69896 4.72956 4.74806 4.77372 4.83303 4.86132 4.87944 4.91652 4.97836 5.06206 5.14626 5.15746 5.21131 5.31568 5.36307 5.43764 5.45474 5.50323 5.57353 5.58712 5.80014 6.06404 6.32670 6.48319 6.62818 7.12683 7.18407 7.24182 8.70647 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.019264 B = 0.001735 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.107611 B =16137.161311 C =16276.177309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.350 5.350 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.266 1.266 13 H -0.274 1.274 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.127 4.127 19 C 0.523 3.477 20 O -0.572 6.572 21 N -0.722 5.722 22 C 0.216 3.784 23 H 0.092 0.908 24 C -0.155 4.155 25 C -0.201 4.201 26 C -0.130 4.130 27 C -0.142 4.142 28 C -0.211 4.211 29 S 0.099 5.901 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.274 0.726 36 H 0.093 0.907 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.408 0.592 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.079 0.921 47 H 0.151 0.849 48 H 0.161 0.839 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 -24.546 -14.549 32.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.191 1.191 13 H -0.199 1.199 14 C -0.051 4.051 15 C -0.145 4.145 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.167 4.167 19 C 0.311 3.689 20 O -0.451 6.451 21 N -0.375 5.375 22 C 0.110 3.890 23 H 0.110 0.890 24 C -0.213 4.213 25 C -0.319 4.319 26 C -0.162 4.162 27 C -0.172 4.172 28 C -0.346 4.346 29 S 0.362 5.638 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.244 0.756 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.169 0.831 48 H 0.178 0.822 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.863 -22.555 -14.429 30.151 hybrid contribution -0.469 -0.647 0.923 1.221 sum -14.331 -23.201 -13.506 30.432 Atomic orbital electron populations 1.20203 0.84749 1.03831 1.03319 1.22785 0.98099 0.90222 0.99990 1.77203 0.87857 1.25037 1.27293 1.48997 1.05281 1.05143 1.54141 1.19124 0.79028 0.88786 0.97482 1.21464 1.13365 1.32370 0.91858 0.93540 1.25742 0.95455 0.94469 1.02242 1.70006 1.19415 1.33270 1.32919 0.85316 0.78411 0.78230 0.78572 1.19951 1.19053 1.19908 1.21458 0.98216 0.84679 1.00754 1.20480 0.92361 0.97780 1.03868 1.19719 0.90359 0.96519 1.20346 1.19360 1.01396 0.88344 0.95100 1.21657 1.04317 0.91059 0.99633 1.21008 0.75752 0.89138 0.83008 1.90692 1.52631 1.69349 1.32439 1.46198 1.69035 1.13237 1.09045 1.19239 0.95398 0.81451 0.92939 0.88962 1.22154 0.97146 0.99738 1.02282 1.24608 1.02065 1.07415 0.97820 1.20390 0.95709 1.00744 0.99311 1.20435 1.02568 1.02596 0.91598 1.26000 0.99257 1.04634 1.04733 1.84283 1.28731 1.52556 0.98214 0.90366 0.91135 0.88420 0.93508 0.96273 0.91730 0.88881 0.92330 0.88248 0.91634 0.91069 0.87397 0.87759 0.75601 0.91690 0.92657 0.90200 0.83111 0.82160 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.12 71.24 0.72 -0.94 16 2 C 0.05 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -16.52 12.58 -47.38 -0.60 -17.12 16 4 N -0.36 -17.13 3.60 -338.41 -1.22 -18.35 16 5 C 0.28 14.82 5.81 85.64 0.50 15.32 16 6 C -0.55 -31.67 9.39 25.60 0.24 -31.43 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.02 1.22 5.46 84.65 0.46 1.68 16 9 N -0.92 -52.57 13.29 21.45 0.28 -52.29 16 10 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 C 0.08 3.11 6.93 41.40 0.29 3.40 16 15 C -0.09 -2.79 9.68 71.24 0.69 -2.10 16 16 C -0.26 -8.91 5.35 -20.14 -0.11 -9.02 16 17 C 0.00 -0.08 4.45 29.85 0.13 0.05 16 18 C -0.13 -2.56 5.68 29.85 0.17 -2.39 16 19 C 0.52 11.13 7.79 87.66 0.68 11.81 16 20 O -0.57 -16.35 15.65 -3.05 -0.05 -16.40 16 21 N -0.72 -11.72 5.06 -446.10 -2.26 -13.97 16 22 C 0.22 3.38 3.00 44.24 0.13 3.52 16 23 H 0.09 1.70 7.56 -2.39 -0.02 1.68 16 24 C -0.15 -2.27 9.47 71.98 0.68 -1.59 16 25 C -0.20 -2.70 5.45 24.59 0.13 -2.57 16 26 C -0.13 -1.56 10.04 21.22 0.21 -1.34 16 27 C -0.14 -1.41 10.18 21.22 0.22 -1.19 16 28 C -0.21 -2.05 11.23 66.72 0.75 -1.30 16 29 S 0.10 1.15 22.31 -56.49 -1.26 -0.11 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.99 7.92 -2.39 -0.02 1.97 16 33 H 0.05 2.50 7.68 -2.38 -0.02 2.48 16 34 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.06 2.16 7.74 -2.39 -0.02 2.14 16 38 H 0.10 2.66 7.14 -2.39 -0.02 2.65 16 39 H 0.07 1.81 7.10 -2.39 -0.02 1.79 16 40 H 0.07 1.89 7.88 -2.39 -0.02 1.87 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.41 5.17 7.68 -92.71 -0.71 4.46 16 44 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 49 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -72.53 424.84 3.39 -69.15 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.24 Total: 18.93 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 6.21 Total: -15.78 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -3.79 Total: -101.73 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.05 Total: -16.40 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -1.26 Total: -0.11 kcal Total: -72.53 3.39 -69.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.070 kcal (2) G-P(sol) polarization free energy of solvation -72.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds