Wall clock time and date at job start Tue Mar 31 2020 05:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89739 * 2 1 4 4 N 1.40086 * 108.20700 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52999 * 109.47451 * 270.28570 * 17 16 14 19 19 C 1.50695 * 109.46918 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00539 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99639 * 179.97438 * 19 18 17 22 22 C 1.46497 * 120.00031 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47477 * 325.00713 * 22 21 19 24 24 C 1.53001 * 109.46808 * 85.00504 * 22 21 19 25 25 C 1.50699 * 109.47169 * 205.00228 * 22 21 19 26 26 C 1.33394 * 125.20304 * 140.00613 * 25 22 21 27 27 C 1.38417 * 114.92055 * 179.97438 * 26 25 22 28 28 C 1.33387 * 114.92384 * 359.97438 * 27 26 25 29 29 S 1.75881 * 125.20555 * 319.69585 * 25 22 21 30 30 H 1.08999 * 109.46544 * 90.02549 * 1 2 3 31 31 H 1.09000 * 109.47294 * 210.02512 * 1 2 3 32 32 H 1.08993 * 109.46794 * 330.02928 * 1 2 3 33 33 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 34 34 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 35 35 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 37 37 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 38 38 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 39 39 H 1.09001 * 109.46924 * 30.28937 * 17 16 14 40 40 H 1.09002 * 109.46528 * 150.28490 * 17 16 14 41 41 H 1.08997 * 109.46981 * 300.00397 * 18 17 16 42 42 H 1.09000 * 109.46794 * 59.99860 * 18 17 16 43 43 H 0.97005 * 120.00193 * 0.02562 * 21 19 18 44 44 H 1.08996 * 109.47370 * 59.99845 * 24 22 21 45 45 H 1.09001 * 109.47085 * 180.02562 * 24 22 21 46 46 H 1.09004 * 109.47063 * 299.99478 * 24 22 21 47 47 H 1.08007 * 122.53510 * 359.97438 * 26 25 22 48 48 H 1.08011 * 122.53907 * 180.02562 * 27 26 25 49 49 H 1.08000 * 125.19933 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7984 1.4210 7 1 4.6294 1.3832 2.2421 8 6 6.2914 2.5957 1.6727 9 7 6.9803 3.1011 0.6729 10 14 6.7979 2.9583 3.4337 11 1 7.1128 1.6852 4.1303 12 1 7.9981 3.8329 3.4334 13 1 5.6854 3.6456 4.1374 14 6 3.6142 -0.7153 -0.0050 15 6 4.8352 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0006 17 6 1.8600 -2.5658 0.0008 18 6 1.7017 -3.0508 -1.4416 19 6 1.2340 -4.4834 -1.4413 20 8 1.0461 -5.0598 -0.3910 21 7 1.0243 -5.1240 -2.6085 22 6 0.5702 -6.5168 -2.6083 23 1 1.0183 -7.0450 -1.7667 24 6 -0.9541 -6.5560 -2.4818 25 6 0.9846 -7.1805 -3.8962 26 6 1.4440 -8.4280 -4.0053 27 6 1.7618 -8.8220 -5.2936 28 6 1.5600 -7.8946 -6.2309 29 16 0.9292 -6.4313 -5.4865 30 1 -0.3632 -0.0005 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.5563 2.4332 -0.5138 34 1 5.6093 0.9981 -0.5134 35 1 7.7514 3.6623 0.8499 36 1 5.1321 -1.8165 1.0139 37 1 4.6063 -2.5306 -0.5295 38 1 5.6498 -1.0886 -0.5258 39 1 2.5935 -3.1870 0.5147 40 1 0.9012 -2.6352 0.5147 41 1 0.9682 -2.4295 -1.9554 42 1 2.6605 -2.9813 -1.9555 43 1 1.1749 -4.6631 -3.4486 44 1 -1.4023 -6.0278 -3.3233 45 1 -1.2921 -7.5923 -2.4812 46 1 -1.2539 -6.0760 -1.5502 47 1 1.5593 -9.0812 -3.1529 48 1 2.1435 -9.8061 -5.5227 49 1 1.7509 -8.0241 -7.2860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024049421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:46 Heat of formation + Delta-G solvation = 27.301305 kcal Electronic energy + Delta-G solvation = -28887.904036 eV Core-core repulsion = 24941.623287 eV Total energy + Delta-G solvation = -3946.280749 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.14711 -40.86992 -38.89575 -36.52053 -36.04510 -34.84199 -34.18792 -32.59599 -31.43493 -30.46044 -29.39169 -28.09129 -27.60900 -25.78310 -25.05205 -23.96067 -22.76102 -21.59427 -20.30516 -20.13807 -20.00761 -18.82993 -18.71560 -17.79924 -17.21914 -16.63159 -16.47870 -16.31061 -16.24423 -15.87920 -15.16041 -14.98804 -14.72376 -14.60919 -14.35549 -14.18172 -14.02573 -13.92400 -13.61566 -13.54563 -13.47139 -13.33790 -13.20652 -13.15188 -13.09169 -12.87588 -12.84003 -12.73558 -12.62817 -12.57498 -12.36407 -12.21548 -11.84942 -11.72530 -11.62027 -11.15054 -10.86827 -10.75281 -10.23056 -9.83090 -9.62677 -9.39843 -9.01595 -8.34959 -6.52663 0.02280 0.64246 1.05206 1.18281 1.35844 1.37419 1.46462 1.66937 1.78442 1.91337 1.94916 2.30121 2.33081 2.94365 3.53713 3.78900 3.91420 3.96755 4.17334 4.24475 4.24908 4.28775 4.29622 4.36331 4.57108 4.58760 4.65279 4.68083 4.70948 4.73296 4.76372 4.85184 4.88079 4.90277 4.92671 4.97721 5.04711 5.14521 5.14983 5.21627 5.31531 5.36186 5.43895 5.45670 5.50305 5.56859 5.58369 5.80250 6.06758 6.32345 6.48553 6.62204 7.12642 7.18490 7.24384 8.70776 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.016147 B = 0.001802 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.614827 B =15537.742582 C =16141.927844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.971 3.029 11 H -0.265 1.265 12 H -0.271 1.271 13 H -0.276 1.276 14 C 0.078 3.922 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.127 4.127 19 C 0.523 3.477 20 O -0.572 6.572 21 N -0.722 5.722 22 C 0.216 3.784 23 H 0.091 0.909 24 C -0.154 4.154 25 C -0.202 4.202 26 C -0.131 4.131 27 C -0.143 4.143 28 C -0.211 4.211 29 S 0.101 5.899 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.019 0.981 34 H 0.047 0.953 35 H 0.274 0.726 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.408 0.592 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.151 0.849 48 H 0.160 0.840 49 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 -25.182 -14.557 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.190 1.190 12 H -0.196 1.196 13 H -0.201 1.201 14 C -0.052 4.052 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.167 4.167 19 C 0.311 3.689 20 O -0.451 6.451 21 N -0.375 5.375 22 C 0.109 3.891 23 H 0.109 0.891 24 C -0.212 4.212 25 C -0.319 4.319 26 C -0.162 4.162 27 C -0.173 4.173 28 C -0.347 4.347 29 S 0.364 5.636 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.121 0.879 43 H 0.244 0.756 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.075 0.925 47 H 0.168 0.832 48 H 0.178 0.822 49 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -13.565 -22.666 -14.434 30.102 hybrid contribution 1.160 -1.184 0.919 1.895 sum -12.405 -23.850 -13.515 30.089 Atomic orbital electron populations 1.20213 0.84666 1.03453 1.03784 1.22791 0.98145 0.90187 0.99950 1.77211 0.87792 1.25035 1.27353 1.48992 1.05326 1.05146 1.54057 1.19117 0.79053 0.88727 0.97503 1.21399 1.13268 1.32626 0.91841 0.93488 1.25753 0.95448 0.94483 1.02289 1.69996 1.19259 1.33314 1.33024 0.85420 0.77798 0.78679 0.78683 1.18997 1.19590 1.20148 1.21462 0.98196 0.84686 1.00872 1.20438 0.92290 0.97902 1.03444 1.19714 0.90313 0.96543 1.20321 1.19357 1.01421 0.88327 0.95110 1.21659 1.04292 0.91108 0.99631 1.21003 0.75650 0.89242 0.83006 1.90689 1.52845 1.69121 1.32448 1.46198 1.69087 1.13180 1.09049 1.19246 0.95448 0.81531 0.92853 0.89102 1.22147 0.93306 1.03398 1.02363 1.24620 1.09920 0.99524 0.97875 1.20389 1.00977 0.95590 0.99280 1.20433 1.03266 1.01938 0.91620 1.26001 1.07684 0.96234 1.04745 1.84247 1.63965 1.17246 0.98104 0.89033 0.88971 0.91757 0.96318 0.93532 0.91729 0.90600 0.87566 0.91876 0.91791 0.90898 0.87220 0.87904 0.75592 0.91575 0.90253 0.92541 0.83176 0.82214 0.79798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.26 71.24 0.73 -0.92 16 2 C 0.05 2.01 7.22 43.10 0.31 2.32 16 3 N -0.35 -16.49 12.58 -47.38 -0.60 -17.08 16 4 N -0.36 -17.13 3.60 -338.41 -1.22 -18.35 16 5 C 0.28 14.85 6.00 85.64 0.51 15.37 16 6 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 7 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 8 C 0.02 1.19 5.46 84.66 0.46 1.65 16 9 N -0.92 -52.69 13.29 21.45 0.28 -52.40 16 10 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.08 3.08 6.93 41.41 0.29 3.37 16 15 C -0.08 -2.69 9.72 71.24 0.69 -1.99 16 16 C -0.26 -8.88 5.35 -20.14 -0.11 -8.99 16 17 C 0.00 -0.08 4.41 29.85 0.13 0.05 16 18 C -0.13 -2.55 5.68 29.85 0.17 -2.38 16 19 C 0.52 11.09 7.79 87.65 0.68 11.78 16 20 O -0.57 -16.32 15.64 -3.01 -0.05 -16.36 16 21 N -0.72 -11.66 5.06 -446.11 -2.26 -13.92 16 22 C 0.22 3.37 3.00 44.25 0.13 3.50 16 23 H 0.09 1.70 7.56 -2.39 -0.02 1.68 16 24 C -0.15 -2.17 9.47 71.98 0.68 -1.48 16 25 C -0.20 -2.74 5.44 24.59 0.13 -2.61 16 26 C -0.13 -1.62 10.04 21.22 0.21 -1.41 16 27 C -0.14 -1.48 10.18 21.21 0.22 -1.26 16 28 C -0.21 -2.12 11.23 66.72 0.75 -1.37 16 29 S 0.10 1.18 22.32 -56.49 -1.26 -0.08 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.01 7.26 -2.39 -0.02 1.99 16 32 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 35 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 36 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.11 2.62 7.79 -2.38 -0.02 2.60 16 38 H 0.06 2.15 7.07 -2.39 -0.02 2.13 16 39 H 0.06 1.78 7.75 -2.39 -0.02 1.76 16 40 H 0.07 1.91 7.21 -2.39 -0.02 1.90 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.41 5.13 7.69 -92.70 -0.71 4.42 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 47 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 48 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 49 H 0.18 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -72.49 423.86 3.42 -69.07 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.25 Total: 19.09 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 6.24 Total: -15.87 kcal Atomic # 7 Polarization: -97.97 SS G_CDS: -3.79 Total: -101.76 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.05 Total: -16.36 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.26 Total: -0.08 kcal Total: -72.49 3.42 -69.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.375 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds