Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89552 * 2 1 4 4 N 1.40086 * 108.20368 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03882 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47262 * 90.02293 * 5 4 3 7 7 H 1.07998 * 119.99550 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00096 * 180.02562 * 6 5 4 9 9 N 1.31525 * 119.99936 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00146 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47528 * 119.99908 * 10 8 6 13 13 H 1.48501 * 109.47117 * 239.99875 * 10 8 6 14 14 C 1.34949 * 107.92406 * 359.75918 * 4 3 2 15 15 C 1.50700 * 126.12740 * 180.23633 * 14 4 3 16 16 C 1.35316 * 107.74556 * 0.39306 * 14 4 3 17 17 C 1.50700 * 126.03820 * 179.87073 * 16 14 4 18 18 C 1.52992 * 109.47257 * 269.71132 * 17 16 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00113 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.46494 * 119.99635 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47001 * 180.02562 * 22 21 19 24 24 C 1.50701 * 109.47324 * 180.02562 * 23 22 21 25 25 C 1.33384 * 125.20789 * 89.99812 * 24 23 22 26 26 C 1.38424 * 114.92438 * 179.97438 * 25 24 23 27 27 C 1.33390 * 114.91732 * 359.97438 * 26 25 24 28 28 S 1.75885 * 109.59663 * 359.76126 * 27 26 25 29 29 H 1.08999 * 109.46826 * 269.96787 * 1 2 3 30 30 H 1.08995 * 109.47371 * 29.96781 * 1 2 3 31 31 H 1.09002 * 109.47006 * 149.97142 * 1 2 3 32 32 H 1.08997 * 109.47296 * 210.02334 * 5 4 3 33 33 H 1.09000 * 109.46930 * 330.02462 * 5 4 3 34 34 H 0.96997 * 119.99719 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47301 * 270.18406 * 15 14 4 36 36 H 1.09002 * 109.47200 * 30.18146 * 15 14 4 37 37 H 1.08999 * 109.47269 * 150.17869 * 15 14 4 38 38 H 1.09004 * 109.46932 * 149.70911 * 17 16 14 39 39 H 1.09005 * 109.47238 * 29.71289 * 17 16 14 40 40 H 1.09004 * 109.47330 * 60.00023 * 18 17 16 41 41 H 1.08997 * 109.47279 * 300.00509 * 18 17 16 42 42 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 43 43 H 1.09005 * 109.47306 * 299.99972 * 22 21 19 44 44 H 1.09002 * 109.47518 * 60.00210 * 22 21 19 45 45 H 1.09005 * 109.46767 * 299.99934 * 23 22 21 46 46 H 1.08996 * 109.47766 * 59.99412 * 23 22 21 47 47 H 1.08005 * 122.53918 * 359.95103 * 25 24 23 48 48 H 1.08000 * 122.54165 * 180.02562 * 26 25 24 49 49 H 1.07997 * 125.20009 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5008 -0.0003 6 6 5.1955 1.7966 1.4207 7 1 4.6303 1.3802 2.2414 8 6 6.2882 2.5987 1.6729 9 7 6.9768 3.1053 0.6734 10 14 6.7915 2.9647 3.4342 11 1 5.8611 2.2801 4.3673 12 1 8.1744 2.4755 3.6658 13 1 6.7389 4.4300 3.6697 14 6 3.6142 -0.7153 0.0044 15 6 4.8350 -1.5988 0.0108 16 6 2.3271 -1.1330 -0.0007 17 6 1.8599 -2.5657 -0.0006 18 6 1.7014 -3.0506 -1.4430 19 6 1.2349 -4.4836 -1.4428 20 8 1.0471 -5.0601 -0.3925 21 7 1.0262 -5.1245 -2.6100 22 6 0.5722 -6.5173 -2.6098 23 6 0.4150 -7.0027 -4.0523 24 6 -0.0527 -8.4352 -4.0521 25 6 -1.3274 -8.8280 -4.0530 26 6 -1.5152 -10.1995 -4.0532 27 6 -0.3929 -10.9204 -4.0531 28 16 0.9989 -9.8451 -4.0596 29 1 -0.3633 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8897 -0.5143 32 1 5.6090 0.9988 -0.5150 33 1 4.5560 2.4338 -0.5130 34 1 7.7458 3.6693 0.8509 35 1 5.1338 -1.8130 -1.0154 36 1 5.6489 -1.0903 0.5276 37 1 4.6053 -2.5322 0.5247 38 1 0.9013 -2.6352 0.5136 39 1 2.5936 -3.1871 0.5131 40 1 2.6601 -2.9811 -1.9571 41 1 0.9679 -2.4293 -1.9566 42 1 1.1726 -4.6622 -3.4501 43 1 1.3056 -7.1385 -2.0957 44 1 -0.3868 -6.5868 -2.0962 45 1 -0.3182 -6.3815 -4.5668 46 1 1.3740 -6.9332 -4.5656 47 1 -2.1507 -8.1290 -4.0531 48 1 -2.4961 -10.6515 -4.0543 49 1 -0.3461 -11.9994 -4.0536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024049537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = 40.668210 kcal Electronic energy + Delta-G solvation = -28187.986789 eV Core-core repulsion = 24242.285672 eV Total energy + Delta-G solvation = -3945.701117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.61749 -39.75327 -38.40576 -35.71958 -34.37615 -33.37446 -32.49738 -32.47545 -30.31069 -28.96673 -28.32491 -26.68219 -25.87768 -24.80544 -23.58997 -22.59227 -22.06043 -20.50884 -19.66871 -18.79783 -18.63093 -17.62659 -16.93726 -16.68313 -16.25407 -16.00478 -15.77209 -15.41465 -14.79531 -14.52802 -14.35598 -13.93104 -13.61506 -13.45256 -13.32022 -13.07820 -12.91412 -12.82851 -12.78414 -12.53635 -12.45357 -12.31543 -12.24618 -12.07146 -11.84246 -11.66557 -11.60019 -11.35447 -11.20979 -11.13809 -10.92617 -10.82718 -10.71911 -10.26411 -9.92968 -9.70817 -9.59702 -9.30315 -9.10817 -8.89559 -8.65766 -8.17136 -7.46974 -6.27064 -4.34441 0.53732 1.18874 1.56796 2.29687 2.61034 2.75592 2.98785 3.19658 3.27734 3.33632 3.41245 3.63136 4.29389 4.32959 4.47251 4.54257 4.66107 4.82033 4.94371 5.06564 5.12456 5.19156 5.20443 5.28268 5.35535 5.38939 5.42197 5.57524 5.69221 5.69626 5.77158 5.84232 5.86993 5.96887 5.97463 6.01801 6.04072 6.05888 6.17849 6.25140 6.38867 6.50437 6.55213 6.89319 7.02056 7.11789 7.30411 7.52364 7.66308 7.87995 8.06381 8.13927 8.67331 8.75978 9.32328 10.80450 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.001466 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.554077 B =19096.322917 C =19757.659317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.050 3.950 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.256 3.744 6 C -0.536 4.536 7 H 0.065 0.935 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.906 3.094 11 H -0.271 1.271 12 H -0.281 1.281 13 H -0.280 1.280 14 C 0.094 3.906 15 C -0.091 4.091 16 C -0.269 4.269 17 C -0.011 4.011 18 C -0.133 4.133 19 C 0.513 3.487 20 O -0.538 6.538 21 N -0.739 5.739 22 C 0.124 3.876 23 C -0.060 4.060 24 C -0.174 4.174 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.215 4.215 28 S 0.102 5.898 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.401 0.599 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.141 0.859 48 H 0.140 0.860 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.121 -25.018 -13.588 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.105 5.105 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.733 3.267 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.206 1.206 14 C -0.038 4.038 15 C -0.150 4.150 16 C -0.281 4.281 17 C -0.050 4.050 18 C -0.173 4.173 19 C 0.301 3.699 20 O -0.414 6.414 21 N -0.392 5.392 22 C 0.000 4.000 23 C -0.100 4.100 24 C -0.292 4.292 25 C -0.166 4.166 26 C -0.165 4.165 27 C -0.350 4.350 28 S 0.366 5.634 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.235 0.765 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.349 -24.152 -12.873 30.025 hybrid contribution -1.044 -0.189 0.445 1.150 sum -13.393 -24.341 -12.428 30.435 Atomic orbital electron populations 1.20016 0.88065 1.02027 1.02131 1.21949 0.96107 0.90780 1.02607 1.77265 0.87537 1.22669 1.24594 1.49246 1.05738 1.04191 1.51306 1.19655 0.77975 0.89595 0.98907 1.21364 1.13000 1.31640 0.91410 0.91725 1.24930 0.95733 0.94996 0.98126 1.69933 1.19036 1.33029 1.30970 0.86307 0.78401 0.78302 0.83739 1.19552 1.20638 1.20628 1.20771 0.96122 0.85664 1.01195 1.20403 0.94427 0.97827 1.02303 1.19358 0.91385 0.95085 1.22272 1.19393 1.01608 0.90846 0.93119 1.21750 1.03057 0.91068 1.01428 1.21077 0.76439 0.89284 0.83101 1.90705 1.50819 1.68578 1.31282 1.46076 1.70463 1.13469 1.09242 1.21288 1.00785 0.82401 0.95531 1.20313 1.02704 0.89832 0.97147 1.24257 0.96493 0.98371 1.10032 1.20174 0.96387 0.96023 1.03971 1.20191 0.99397 0.93337 1.03567 1.25658 0.95472 1.03430 1.10455 1.84423 1.09915 0.96447 1.72618 0.91402 0.91652 0.91459 0.93091 0.93062 0.92322 0.91287 0.89989 0.90675 0.91309 0.91387 0.88988 0.88974 0.76503 0.91327 0.91164 0.89150 0.89923 0.84165 0.84229 0.81887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.12 36.01 0.36 -0.54 16 2 C 0.05 0.95 7.22 -82.41 -0.59 0.35 16 3 N -0.30 -6.81 12.58 33.67 0.42 -6.39 16 4 N -0.33 -7.57 3.60 -58.31 -0.21 -7.78 16 5 C 0.26 6.57 5.81 -5.19 -0.03 6.54 16 6 C -0.54 -14.82 9.39 -34.44 -0.32 -15.14 16 7 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -25.08 13.29 55.43 0.74 -24.35 16 10 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.09 1.86 6.93 -82.26 -0.57 1.29 16 15 C -0.09 -1.49 9.68 36.01 0.35 -1.14 16 16 C -0.27 -4.78 5.35 -105.05 -0.56 -5.34 16 17 C -0.01 -0.15 4.45 -27.89 -0.12 -0.28 16 18 C -0.13 -1.47 5.68 -27.89 -0.16 -1.63 16 19 C 0.51 5.89 7.83 -10.98 -0.09 5.81 16 20 O -0.54 -8.36 15.98 5.56 0.09 -8.28 16 21 N -0.74 -5.90 5.56 -60.29 -0.33 -6.24 16 22 C 0.12 0.97 5.66 -4.04 -0.02 0.94 16 23 C -0.06 -0.33 5.82 -27.88 -0.16 -0.49 16 24 C -0.17 -1.16 5.76 -36.00 -0.21 -1.37 16 25 C -0.14 -0.87 10.05 -41.21 -0.41 -1.29 16 26 C -0.13 -0.82 10.18 -41.21 -0.42 -1.24 16 27 C -0.21 -1.31 11.23 29.04 0.33 -0.98 16 28 S 0.10 0.69 23.33 -107.50 -2.51 -1.82 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 32 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 33 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.49 7.74 -51.93 -0.40 1.09 16 37 H 0.07 1.07 7.14 -51.93 -0.37 0.70 16 38 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 39 H 0.07 1.01 7.10 -51.93 -0.37 0.64 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.40 2.05 8.47 -40.82 -0.35 1.71 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 48 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 49 H 0.16 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 427.44 15.07 6.44 6.44 Total: -1.00 -33.60 427.44 -10.86 -44.46 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.75 Total: 0.54 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.73 Total: -12.82 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.62 Total: -44.75 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 6.44 Total: 6.44 kcal Total: -33.60 -10.86 -44.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.133 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds