Wall clock time and date at job start Tue Mar 31 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30837 * 125.89552 * 2 1 4 4 N 1.40086 * 108.20368 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03882 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.47262 * 90.02293 * 5 4 3 7 7 H 1.07998 * 119.99550 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00096 * 180.02562 * 6 5 4 9 9 N 1.31525 * 119.99936 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00146 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47013 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47528 * 119.99908 * 10 8 6 13 13 H 1.48501 * 109.47117 * 239.99875 * 10 8 6 14 14 C 1.34949 * 107.92406 * 359.75918 * 4 3 2 15 15 C 1.50700 * 126.12740 * 180.23633 * 14 4 3 16 16 C 1.35316 * 107.74556 * 0.39306 * 14 4 3 17 17 C 1.50700 * 126.03820 * 179.87073 * 16 14 4 18 18 C 1.52992 * 109.47257 * 269.71132 * 17 16 14 19 19 C 1.50700 * 109.47257 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00113 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.46494 * 119.99635 * 180.02562 * 21 19 18 23 23 C 1.53002 * 109.47001 * 180.02562 * 22 21 19 24 24 C 1.50701 * 109.47324 * 180.02562 * 23 22 21 25 25 C 1.33384 * 125.20789 * 89.99812 * 24 23 22 26 26 C 1.38424 * 114.92438 * 179.97438 * 25 24 23 27 27 C 1.33390 * 114.91732 * 359.97438 * 26 25 24 28 28 S 1.75885 * 109.59663 * 359.76126 * 27 26 25 29 29 H 1.08999 * 109.46826 * 269.96787 * 1 2 3 30 30 H 1.08995 * 109.47371 * 29.96781 * 1 2 3 31 31 H 1.09002 * 109.47006 * 149.97142 * 1 2 3 32 32 H 1.08997 * 109.47296 * 210.02334 * 5 4 3 33 33 H 1.09000 * 109.46930 * 330.02462 * 5 4 3 34 34 H 0.96997 * 119.99719 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.47301 * 270.18406 * 15 14 4 36 36 H 1.09002 * 109.47200 * 30.18146 * 15 14 4 37 37 H 1.08999 * 109.47269 * 150.17869 * 15 14 4 38 38 H 1.09004 * 109.46932 * 149.70911 * 17 16 14 39 39 H 1.09005 * 109.47238 * 29.71289 * 17 16 14 40 40 H 1.09004 * 109.47330 * 60.00023 * 18 17 16 41 41 H 1.08997 * 109.47279 * 300.00509 * 18 17 16 42 42 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 43 43 H 1.09005 * 109.47306 * 299.99972 * 22 21 19 44 44 H 1.09002 * 109.47518 * 60.00210 * 22 21 19 45 45 H 1.09005 * 109.46767 * 299.99934 * 23 22 21 46 46 H 1.08996 * 109.47766 * 59.99412 * 23 22 21 47 47 H 1.08005 * 122.53918 * 359.95103 * 25 24 23 48 48 H 1.08000 * 122.54165 * 180.02562 * 26 25 24 49 49 H 1.07997 * 125.20009 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 -0.0006 5 6 4.7898 1.5008 -0.0003 6 6 5.1955 1.7966 1.4207 7 1 4.6303 1.3802 2.2414 8 6 6.2882 2.5987 1.6729 9 7 6.9768 3.1053 0.6734 10 14 6.7915 2.9647 3.4342 11 1 5.8611 2.2801 4.3673 12 1 8.1744 2.4755 3.6658 13 1 6.7389 4.4300 3.6697 14 6 3.6142 -0.7153 0.0044 15 6 4.8350 -1.5988 0.0108 16 6 2.3271 -1.1330 -0.0007 17 6 1.8599 -2.5657 -0.0006 18 6 1.7014 -3.0506 -1.4430 19 6 1.2349 -4.4836 -1.4428 20 8 1.0471 -5.0601 -0.3925 21 7 1.0262 -5.1245 -2.6100 22 6 0.5722 -6.5173 -2.6098 23 6 0.4150 -7.0027 -4.0523 24 6 -0.0527 -8.4352 -4.0521 25 6 -1.3274 -8.8280 -4.0530 26 6 -1.5152 -10.1995 -4.0532 27 6 -0.3929 -10.9204 -4.0531 28 16 0.9989 -9.8451 -4.0596 29 1 -0.3633 -0.0006 1.0277 30 1 -0.3634 0.8902 -0.5133 31 1 -0.3633 -0.8897 -0.5143 32 1 5.6090 0.9988 -0.5150 33 1 4.5560 2.4338 -0.5130 34 1 7.7458 3.6693 0.8509 35 1 5.1338 -1.8130 -1.0154 36 1 5.6489 -1.0903 0.5276 37 1 4.6053 -2.5322 0.5247 38 1 0.9013 -2.6352 0.5136 39 1 2.5936 -3.1871 0.5131 40 1 2.6601 -2.9811 -1.9571 41 1 0.9679 -2.4293 -1.9566 42 1 1.1726 -4.6622 -3.4501 43 1 1.3056 -7.1385 -2.0957 44 1 -0.3868 -6.5868 -2.0962 45 1 -0.3182 -6.3815 -4.5668 46 1 1.3740 -6.9332 -4.5656 47 1 -2.1507 -8.1290 -4.0531 48 1 -2.4961 -10.6515 -4.0543 49 1 -0.3461 -11.9994 -4.0536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024049537.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:34 Heat of formation + Delta-G solvation = 21.092062 kcal Electronic energy + Delta-G solvation = -28188.835674 eV Core-core repulsion = 24242.285672 eV Total energy + Delta-G solvation = -3946.550002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13655 -40.65977 -38.87951 -36.45874 -36.04454 -34.82643 -34.17204 -33.15344 -31.68219 -30.49118 -29.02389 -27.85938 -27.60349 -25.71270 -24.76338 -23.75058 -22.99094 -21.36916 -20.29595 -20.13368 -20.10906 -18.82575 -18.26616 -17.67048 -17.24748 -16.92271 -16.76538 -16.32350 -16.17270 -15.94279 -15.53979 -15.03526 -14.70623 -14.55878 -14.38186 -14.05156 -13.99391 -13.96080 -13.70184 -13.60256 -13.42286 -13.28659 -13.25498 -13.19449 -13.07640 -12.85747 -12.81592 -12.71139 -12.62161 -12.55836 -12.23146 -12.14669 -11.84356 -11.69199 -11.60775 -11.14823 -10.85126 -10.75564 -10.06556 -9.82069 -9.57787 -9.38977 -9.01327 -8.35265 -6.53042 0.07285 0.73012 1.11044 1.18945 1.34095 1.36348 1.48734 1.72845 1.82944 1.91694 1.95947 2.32605 2.34252 2.94015 3.77031 3.88537 3.95289 3.97094 4.05274 4.07329 4.27008 4.27792 4.30361 4.36862 4.48633 4.62234 4.67853 4.70698 4.73424 4.75701 4.79837 4.85020 4.87093 4.88891 4.91056 4.99085 5.04510 5.06877 5.16565 5.24922 5.32872 5.39606 5.45944 5.50104 5.50956 5.58242 5.60996 5.80269 6.07080 6.32893 6.61283 6.63046 7.13164 7.18643 7.33832 8.70728 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.001466 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.554077 B =19096.322917 C =19757.659317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.053 3.947 3 N -0.350 5.350 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.023 3.977 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.266 1.266 13 H -0.274 1.274 14 C 0.078 3.922 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.005 4.005 18 C -0.124 4.124 19 C 0.516 3.484 20 O -0.583 6.583 21 N -0.721 5.721 22 C 0.128 3.872 23 C -0.051 4.051 24 C -0.184 4.184 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.219 4.219 28 S 0.076 5.924 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.020 0.980 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.418 0.582 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.154 0.846 48 H 0.157 0.843 49 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 -26.525 -14.257 33.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.173 5.173 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.592 4.592 7 H 0.064 0.936 8 C -0.178 4.178 9 N -0.556 5.556 10 Si 0.794 3.206 11 H -0.200 1.200 12 H -0.191 1.191 13 H -0.199 1.199 14 C -0.052 4.052 15 C -0.145 4.145 16 C -0.269 4.269 17 C -0.044 4.044 18 C -0.164 4.164 19 C 0.304 3.696 20 O -0.463 6.463 21 N -0.374 5.374 22 C 0.004 3.996 23 C -0.090 4.090 24 C -0.301 4.301 25 C -0.172 4.172 26 C -0.174 4.174 27 C -0.354 4.354 28 S 0.339 5.661 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.255 0.745 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.128 0.872 46 H 0.110 0.890 47 H 0.172 0.828 48 H 0.175 0.825 49 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -13.527 -25.675 -13.601 32.049 hybrid contribution -0.790 0.187 0.607 1.014 sum -14.317 -25.488 -12.994 31.992 Atomic orbital electron populations 1.20204 0.84678 1.03902 1.03285 1.22795 0.98142 0.90195 1.00010 1.77202 0.87838 1.25032 1.27270 1.48997 1.05290 1.05128 1.54146 1.19124 0.79041 0.88804 0.97451 1.21474 1.13436 1.32363 0.91893 0.93569 1.25727 0.95438 0.94443 1.02201 1.70009 1.19401 1.33264 1.32893 0.85322 0.78404 0.78236 0.78607 1.19999 1.19054 1.19895 1.21456 0.98211 0.84683 1.00806 1.20478 0.92375 0.97739 1.03897 1.19723 0.90364 0.96528 1.20315 1.19366 1.01237 0.88303 0.95482 1.21631 1.04436 0.91039 0.99305 1.21073 0.75974 0.89303 0.83212 1.90698 1.53108 1.69498 1.33026 1.45900 1.68877 1.13496 1.09134 1.21237 0.99589 0.81829 0.96968 1.20269 1.03836 0.89345 0.95550 1.24429 0.96520 0.98682 1.10509 1.20454 0.96753 0.96568 1.03457 1.20483 1.00236 0.93427 1.03282 1.25932 0.95001 1.04276 1.10177 1.84488 1.11016 0.97477 1.73131 0.90482 0.91084 0.88287 0.93485 0.96233 0.91733 0.88792 0.92360 0.88370 0.91218 0.91954 0.87671 0.87039 0.74481 0.93081 0.92211 0.87211 0.88961 0.82813 0.82514 0.80263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.63 10.12 71.24 0.72 -0.90 16 2 C 0.05 1.98 7.22 43.10 0.31 2.29 16 3 N -0.35 -16.39 12.58 -47.39 -0.60 -16.98 16 4 N -0.36 -17.05 3.60 -338.40 -1.22 -18.27 16 5 C 0.28 14.77 5.81 85.64 0.50 15.27 16 6 C -0.55 -31.70 9.39 25.60 0.24 -31.46 16 7 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 8 C 0.02 1.27 5.46 84.65 0.46 1.73 16 9 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 10 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 14 C 0.08 3.08 6.93 41.40 0.29 3.37 16 15 C -0.09 -2.79 9.68 71.24 0.69 -2.10 16 16 C -0.26 -8.85 5.35 -20.14 -0.11 -8.96 16 17 C 0.00 -0.13 4.45 29.85 0.13 0.00 16 18 C -0.12 -2.37 5.68 29.85 0.17 -2.20 16 19 C 0.52 10.67 7.83 87.66 0.69 11.36 16 20 O -0.58 -17.43 15.98 -3.03 -0.05 -17.47 16 21 N -0.72 -9.64 5.56 -463.05 -2.57 -12.21 16 22 C 0.13 1.79 5.66 86.38 0.49 2.27 16 23 C -0.05 -0.43 5.82 29.85 0.17 -0.26 16 24 C -0.18 -2.18 5.76 24.59 0.14 -2.04 16 25 C -0.14 -1.59 10.05 21.22 0.21 -1.37 16 26 C -0.14 -1.54 10.18 21.22 0.22 -1.32 16 27 C -0.22 -2.41 11.23 66.72 0.75 -1.66 16 28 S 0.08 0.97 23.33 -56.49 -1.32 -0.35 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 1.94 7.92 -2.39 -0.02 1.93 16 32 H 0.05 2.50 7.68 -2.39 -0.02 2.48 16 33 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.74 16 35 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.06 2.15 7.74 -2.39 -0.02 2.13 16 37 H 0.10 2.65 7.14 -2.39 -0.02 2.63 16 38 H 0.07 1.86 7.88 -2.38 -0.02 1.85 16 39 H 0.06 1.75 7.10 -2.38 -0.02 1.73 16 40 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.42 2.82 8.47 -92.71 -0.79 2.04 16 43 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 48 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 49 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -75.65 427.44 2.80 -72.85 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.17 Total: 14.66 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 6.07 Total: -15.98 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.10 Total: -99.58 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.47 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -1.32 Total: -0.35 kcal Total: -75.65 2.80 -72.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024049537.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.939 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds