Wall clock time and date at job start Tue Mar 31 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.89882 * 2 1 4 4 N 1.40080 * 108.20344 * 180.02562 * 3 2 1 5 5 C 1.46501 * 126.03696 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46967 * 90.02364 * 5 4 3 7 7 H 1.08000 * 120.00238 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00327 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99597 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00570 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47297 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47693 * 119.99798 * 10 8 6 13 13 H 1.48504 * 109.47048 * 240.00081 * 10 8 6 14 14 C 1.34951 * 107.92649 * 359.75740 * 4 3 2 15 15 C 1.50700 * 126.12519 * 180.23853 * 14 4 3 16 16 C 1.35306 * 107.74429 * 0.39166 * 14 4 3 17 17 C 1.50706 * 126.04096 * 179.87280 * 16 14 4 18 18 C 1.52999 * 109.47090 * 269.71662 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00069 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99853 * 179.97438 * 19 18 17 22 22 C 1.46501 * 120.00132 * 359.97438 * 21 19 18 23 23 C 1.46496 * 119.99726 * 179.97438 * 21 19 18 24 24 C 1.50708 * 109.46996 * 90.00353 * 23 21 19 25 25 C 1.38423 * 122.53660 * 89.99952 * 24 23 21 26 26 C 1.33392 * 114.91475 * 179.97438 * 25 24 23 27 27 S 1.75879 * 109.59642 * 359.97438 * 26 25 24 28 28 C 1.33392 * 122.53795 * 269.70720 * 24 23 21 29 29 H 1.09003 * 109.47113 * 269.97554 * 1 2 3 30 30 H 1.09000 * 109.47131 * 29.97372 * 1 2 3 31 31 H 1.09003 * 109.47348 * 149.97277 * 1 2 3 32 32 H 1.09000 * 109.47667 * 210.02168 * 5 4 3 33 33 H 1.09004 * 109.47353 * 330.02766 * 5 4 3 34 34 H 0.97002 * 119.99849 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.46893 * 270.17807 * 15 14 4 36 36 H 1.08998 * 109.47339 * 30.17681 * 15 14 4 37 37 H 1.09001 * 109.47172 * 150.18283 * 15 14 4 38 38 H 1.08994 * 109.46790 * 29.71060 * 17 16 14 39 39 H 1.08997 * 109.47305 * 149.71501 * 17 16 14 40 40 H 1.09011 * 109.46854 * 299.99717 * 18 17 16 41 41 H 1.09005 * 109.47366 * 59.99142 * 18 17 16 42 42 H 1.08998 * 109.47234 * 89.99584 * 22 21 19 43 43 H 1.09000 * 109.47025 * 210.00030 * 22 21 19 44 44 H 1.09002 * 109.46666 * 329.99664 * 22 21 19 45 45 H 1.09002 * 109.47226 * 209.99977 * 23 21 19 46 46 H 1.08999 * 109.47406 * 330.00576 * 23 21 19 47 47 H 1.08000 * 122.54340 * 359.97438 * 25 24 23 48 48 H 1.07996 * 125.19806 * 180.02562 * 26 25 24 49 49 H 1.07998 * 125.20168 * 0.02870 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1955 1.7964 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5985 1.6730 9 7 6.9769 3.1051 0.6736 10 14 6.7916 2.9644 3.4343 11 1 5.8611 2.2798 4.3674 12 1 8.1744 2.4752 3.6659 13 1 6.7389 4.4297 3.6698 14 6 3.6142 -0.7154 0.0045 15 6 4.8350 -1.5989 0.0109 16 6 2.3272 -1.1330 -0.0006 17 6 1.8598 -2.5658 -0.0004 18 6 1.7014 -3.0508 -1.4428 19 6 1.2335 -4.4833 -1.4426 20 8 1.0457 -5.0597 -0.3921 21 7 1.0237 -5.1238 -2.6097 22 6 1.2500 -4.4274 -3.8786 23 6 0.5694 -6.5166 -2.6095 24 6 -0.9372 -6.5535 -2.6085 25 6 -1.6822 -6.5717 -3.7750 26 6 -3.0039 -6.6046 -3.5972 27 16 -3.3675 -6.6149 -1.8765 28 6 -1.6536 -6.5768 -1.4835 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 5.6091 0.9987 -0.5149 33 1 4.5561 2.4338 -0.5130 34 1 7.7454 3.6696 0.8511 35 1 5.1337 -1.8132 -1.0153 36 1 5.6489 -1.0904 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 2.5934 -3.1871 0.5132 39 1 0.9012 -2.6352 0.5136 40 1 0.9677 -2.4294 -1.9565 41 1 2.6601 -2.9812 -1.9569 42 1 2.2831 -4.5733 -4.1939 43 1 0.5783 -4.8280 -4.6378 44 1 1.0569 -3.3626 -3.7480 45 1 0.9446 -7.0213 -3.4997 46 1 0.9457 -7.0214 -1.7198 47 1 -1.2280 -6.5601 -4.7547 48 1 -3.7382 -6.6231 -4.3889 49 1 -1.2439 -6.5715 -0.4843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024050374.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:38 Heat of formation + Delta-G solvation = 39.118867 kcal Electronic energy + Delta-G solvation = -29398.928845 eV Core-core repulsion = 25453.160544 eV Total energy + Delta-G solvation = -3945.768301 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.15619 -40.97027 -38.92637 -36.23409 -36.08013 -34.86573 -34.18430 -32.01685 -31.07380 -30.46707 -28.71183 -27.93902 -27.62354 -27.01305 -25.21567 -24.06024 -23.27564 -20.44840 -20.27258 -20.06873 -19.54462 -18.82869 -18.59438 -17.78585 -17.19712 -17.08515 -16.88508 -16.24672 -16.02542 -15.84306 -15.11400 -14.80578 -14.55492 -14.33923 -14.25074 -14.03307 -13.91378 -13.87300 -13.71910 -13.65245 -13.46309 -13.40527 -13.28243 -13.24534 -13.12183 -13.03349 -12.85637 -12.72488 -12.62706 -12.55449 -12.37509 -12.23214 -11.86312 -11.69749 -11.68235 -11.15658 -10.79286 -10.75960 -9.83225 -9.73144 -9.61992 -9.33909 -9.02141 -8.35691 -6.53268 0.10551 0.77048 1.11411 1.17827 1.33705 1.35897 1.48292 1.59247 1.74883 1.92258 1.95180 2.32368 2.41058 2.93521 3.65943 3.87213 3.94345 4.03682 4.12839 4.22907 4.24497 4.31459 4.34357 4.38732 4.58549 4.60125 4.65063 4.70490 4.73896 4.76503 4.77047 4.81539 4.84631 4.85447 4.86618 4.96842 5.03099 5.06098 5.14111 5.16913 5.31323 5.44347 5.49673 5.50574 5.55755 5.56520 5.61448 5.79913 6.05023 6.32171 6.43355 6.62526 7.11753 7.18178 7.26116 8.70358 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.001848 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.481768 B =15147.651390 C =15493.314186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.054 3.946 3 N -0.349 5.349 4 N -0.355 5.355 5 C 0.276 3.724 6 C -0.552 4.552 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.971 3.029 11 H -0.275 1.275 12 H -0.265 1.265 13 H -0.274 1.274 14 C 0.079 3.921 15 C -0.086 4.086 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.122 4.122 19 C 0.514 3.486 20 O -0.575 6.575 21 N -0.611 5.611 22 C 0.070 3.930 23 C 0.173 3.827 24 C -0.128 4.128 25 C -0.128 4.128 26 C -0.213 4.213 27 S 0.079 5.921 28 C -0.206 4.206 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.020 0.980 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.073 0.927 47 H 0.165 0.835 48 H 0.187 0.813 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 -22.847 -13.647 31.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.173 5.173 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.556 5.556 10 Si 0.795 3.205 11 H -0.200 1.200 12 H -0.190 1.190 13 H -0.199 1.199 14 C -0.050 4.050 15 C -0.144 4.144 16 C -0.268 4.268 17 C -0.042 4.042 18 C -0.162 4.162 19 C 0.303 3.697 20 O -0.455 6.455 21 N -0.343 5.343 22 C -0.072 4.072 23 C 0.048 3.952 24 C -0.142 4.142 25 C -0.158 4.158 26 C -0.348 4.348 27 S 0.342 5.658 28 C -0.343 4.343 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.090 0.910 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.134 0.866 46 H 0.092 0.908 47 H 0.183 0.817 48 H 0.204 0.796 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.351 -21.670 -12.337 30.378 hybrid contribution 1.759 0.085 0.290 1.785 sum -15.592 -21.585 -12.047 29.226 Atomic orbital electron populations 1.20183 0.84879 1.03721 1.03233 1.22752 0.98023 0.90254 1.00099 1.77198 0.87870 1.24972 1.27262 1.49005 1.05278 1.05141 1.54118 1.19125 0.78997 0.88787 0.97459 1.21459 1.13384 1.32338 0.91863 0.93618 1.25740 0.95468 0.94486 1.02231 1.70006 1.19426 1.33234 1.32883 0.85319 0.78417 0.78225 0.78586 1.20019 1.19015 1.19912 1.21444 0.98168 0.84676 1.00745 1.20477 0.92344 0.97717 1.03907 1.19701 0.90402 0.96436 1.20309 1.19349 1.01054 0.88426 0.95325 1.21638 1.03894 0.91455 0.99183 1.21058 0.76203 0.89233 0.83157 1.90655 1.53336 1.69057 1.32458 1.47999 1.66173 1.13168 1.06935 1.22074 1.02812 0.98062 0.84233 1.20111 0.88099 0.82533 1.04426 1.19469 0.97852 1.04445 0.92397 1.20287 0.92779 1.03092 0.99645 1.25919 1.00375 1.09946 0.98545 1.84387 1.06217 1.72744 1.02428 1.25698 0.96282 1.09423 1.02885 0.90469 0.91026 0.88713 0.93445 0.96234 0.91720 0.88784 0.92292 0.88388 0.91820 0.91553 0.87893 0.87923 0.90965 0.89094 0.90482 0.86642 0.90827 0.81724 0.79618 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.12 71.24 0.72 -0.96 16 2 C 0.05 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -16.51 12.58 -47.38 -0.60 -17.10 16 4 N -0.36 -17.12 3.60 -338.40 -1.22 -18.33 16 5 C 0.28 14.80 5.81 85.63 0.50 15.30 16 6 C -0.55 -31.64 9.39 25.60 0.24 -31.40 16 7 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 8 C 0.02 1.21 5.46 84.65 0.46 1.67 16 9 N -0.92 -52.41 13.29 21.45 0.28 -52.13 16 10 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 C 0.08 3.15 6.93 41.40 0.29 3.44 16 15 C -0.09 -2.78 9.68 71.24 0.69 -2.09 16 16 C -0.26 -8.97 5.35 -20.14 -0.11 -9.08 16 17 C 0.00 -0.07 4.45 29.85 0.13 0.06 16 18 C -0.12 -2.55 4.23 29.85 0.13 -2.42 16 19 C 0.51 11.32 7.67 87.65 0.67 12.00 16 20 O -0.58 -16.88 15.56 -3.03 -0.05 -16.93 16 21 N -0.61 -9.49 2.86 -851.12 -2.43 -11.92 16 22 C 0.07 0.62 10.24 127.77 1.31 1.92 16 23 C 0.17 2.47 5.66 85.64 0.48 2.95 16 24 C -0.13 -1.99 5.38 -20.92 -0.11 -2.11 16 25 C -0.13 -1.47 9.98 21.22 0.21 -1.26 16 26 C -0.21 -2.50 11.23 66.72 0.75 -1.75 16 27 S 0.08 1.24 23.34 -56.49 -1.32 -0.08 16 28 C -0.21 -3.93 10.98 66.72 0.73 -3.20 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.09 2.04 7.92 -2.39 -0.02 2.02 16 32 H 0.05 2.52 7.68 -2.39 -0.02 2.50 16 33 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 35 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.06 2.17 7.74 -2.39 -0.02 2.16 16 37 H 0.10 2.66 7.14 -2.39 -0.02 2.64 16 38 H 0.06 1.82 7.10 -2.39 -0.02 1.80 16 39 H 0.07 1.86 7.88 -2.39 -0.02 1.84 16 40 H 0.10 1.91 7.40 -2.38 -0.02 1.90 16 41 H 0.10 1.93 8.11 -2.38 -0.02 1.91 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.09 0.44 8.07 -2.39 -0.02 0.42 16 44 H 0.08 0.70 6.44 -2.39 -0.02 0.68 16 45 H 0.12 0.92 8.06 -2.39 -0.02 0.90 16 46 H 0.07 1.35 7.40 -2.39 -0.02 1.33 16 47 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 48 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 49 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -74.05 423.79 5.05 -69.00 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.94 Total: 16.14 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 7.41 Total: -14.59 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -3.96 Total: -99.48 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.05 Total: -16.93 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -1.32 Total: -0.08 kcal Total: -74.05 5.05 -69.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024050374.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.121 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds