Wall clock time and date at job start Tue Mar 31 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35947 * 117.00122 * 2 1 4 4 C 1.38659 * 120.06655 * 359.97438 * 3 2 1 5 5 C 1.38183 * 119.97181 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.09399 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93541 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47360 * 270.02686 * 7 6 5 9 9 C 1.46961 * 110.99835 * 293.79712 * 8 7 6 10 10 C 1.53048 * 109.36286 * 176.81177 * 9 8 7 11 11 N 1.46954 * 109.36878 * 58.40366 * 10 9 8 12 12 C 1.46900 * 111.00435 * 176.81169 * 11 10 9 13 13 C 1.52998 * 109.47070 * 307.68399 * 12 11 10 14 14 H 1.09004 * 109.47058 * 57.88627 * 13 12 11 15 15 C 1.47205 * 109.47279 * 297.89099 * 13 12 11 16 16 N 9.62927 * 152.31786 * 94.17353 * 3 1 2 17 17 C 1.52991 * 109.47272 * 177.88584 * 13 12 11 18 18 C 1.50701 * 109.47601 * 184.99801 * 17 13 12 19 19 H 1.08000 * 119.99546 * 0.02562 * 18 17 13 20 20 C 1.37873 * 120.00341 * 179.97438 * 18 17 13 21 21 N 1.31518 * 119.99888 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47004 * 90.00126 * 22 20 18 24 24 H 1.48500 * 109.47051 * 210.00272 * 22 20 18 25 25 H 1.48493 * 109.46909 * 330.00508 * 22 20 18 26 26 C 1.46960 * 110.87878 * 300.68366 * 11 10 9 27 27 C 1.46958 * 111.00068 * 170.00411 * 8 7 6 28 28 C 1.38255 * 120.12918 * 0.02562 * 6 5 4 29 29 C 1.38329 * 120.02738 * 0.27480 * 28 6 5 30 30 F 1.35103 * 120.04840 * 179.72712 * 29 28 6 31 31 H 1.09004 * 109.46609 * 60.00304 * 1 2 3 32 32 H 1.08993 * 109.47512 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47387 * 300.00684 * 1 2 3 34 34 H 1.08006 * 120.01272 * 0.04658 * 4 3 2 35 35 H 1.08003 * 119.94843 * 180.02562 * 5 4 3 36 36 H 1.09000 * 109.47381 * 30.02709 * 7 6 5 37 37 H 1.09005 * 109.47131 * 150.02392 * 7 6 5 38 38 H 1.08998 * 109.49208 * 296.78095 * 9 8 7 39 39 H 1.09003 * 109.48792 * 56.84417 * 9 8 7 40 40 H 1.09009 * 109.48983 * 298.43400 * 10 9 8 41 41 H 1.09001 * 109.50973 * 178.38053 * 10 9 8 42 42 H 1.09001 * 109.46840 * 67.68496 * 12 11 10 43 43 H 1.09004 * 109.47025 * 187.68451 * 12 11 10 44 44 H 1.09006 * 109.47697 * 305.00589 * 17 13 12 45 45 H 1.09006 * 109.47187 * 64.99795 * 17 13 12 46 46 H 0.96999 * 119.99458 * 179.97438 * 21 20 18 47 47 H 1.09011 * 109.48502 * 299.34538 * 26 11 10 48 48 H 1.09003 * 109.48971 * 179.28584 * 26 11 10 49 49 H 1.09001 * 109.48426 * 303.15194 * 27 8 7 50 50 H 1.08997 * 109.49438 * 63.19346 * 27 8 7 51 51 H 1.07996 * 119.98466 * 179.97438 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9218 3.6052 -0.0011 6 6 3.3025 3.6775 -0.0005 7 6 3.9852 5.0210 -0.0017 8 7 4.2071 5.4564 -1.3870 9 6 5.1693 4.5783 -2.0673 10 6 5.3122 5.0163 -3.5268 11 7 5.7565 6.4163 -3.5742 12 6 5.9783 6.8517 -4.9596 13 6 6.9079 5.8607 -5.6629 14 1 6.4688 4.8636 -5.6288 15 6 8.2135 5.8452 -4.9830 16 7 9.2182 5.8351 -4.4616 17 6 7.0969 6.2851 -7.1205 18 6 7.9115 5.2447 -7.8452 19 1 8.2593 4.3682 -7.3187 20 6 8.2120 5.4113 -9.1805 21 7 7.7881 6.4785 -9.8217 22 14 9.2211 4.1213 -10.0788 23 1 8.3133 3.1031 -10.6657 24 1 10.0031 4.7703 -11.1617 25 1 10.1490 3.4650 -9.1232 26 6 4.7943 7.2944 -2.8939 27 6 4.6514 6.8564 -1.4344 28 6 4.0580 2.5197 0.0000 29 6 3.4334 1.2855 -0.0057 30 9 4.1713 0.1538 -0.0108 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 0.2138 2.3201 -0.0002 35 1 1.3343 4.5115 -0.0011 36 1 3.3564 5.7486 0.5115 37 1 4.9432 4.9422 0.5123 38 1 6.1374 4.6458 -1.5709 39 1 4.8121 3.5492 -2.0298 40 1 4.3500 4.9228 -4.0305 41 1 6.0469 4.3846 -4.0262 42 1 5.0243 6.8909 -5.4853 43 1 6.4348 7.8415 -4.9606 44 1 6.1228 6.3826 -7.5999 45 1 7.6165 7.2427 -7.1557 46 1 7.9998 6.5958 -10.7609 47 1 3.8262 7.2269 -3.3904 48 1 5.1515 8.3236 -2.9314 49 1 3.9165 7.4881 -0.9354 50 1 5.6133 6.9500 -0.9304 51 1 5.1364 2.5789 0.0000 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025232574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:27 Heat of formation + Delta-G solvation = -38.714479 kcal Electronic energy + Delta-G solvation = -31881.378140 eV Core-core repulsion = 27501.854650 eV Total energy + Delta-G solvation = -4379.523490 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.191 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.84956 -41.16923 -40.44334 -38.99840 -38.02004 -36.34881 -35.38599 -33.56770 -32.02951 -31.81816 -31.59196 -29.44112 -28.41002 -27.25027 -25.40109 -24.73641 -23.91863 -23.62058 -23.04616 -22.13214 -20.71879 -19.29159 -18.57708 -18.18379 -17.93377 -17.79280 -17.35712 -17.08469 -16.55868 -16.06258 -15.99157 -15.92150 -15.82852 -15.71671 -15.68015 -15.31996 -15.19099 -14.89320 -14.56831 -14.25541 -14.11295 -14.02574 -13.76748 -13.36220 -13.27613 -13.13481 -13.04315 -13.01753 -12.78190 -12.65123 -12.50020 -12.47288 -12.32490 -12.19554 -12.10182 -12.06705 -11.96319 -11.68421 -11.57806 -11.32624 -11.05451 -10.55498 -9.93086 -9.39623 -9.20684 -9.07904 -8.20458 -6.28524 0.13194 0.19002 1.39008 1.40958 1.50177 2.06373 2.13698 2.20773 2.40422 2.45486 2.93850 3.10209 3.14958 3.23934 3.34343 3.66445 3.75326 3.94292 3.97887 4.00350 4.22743 4.24229 4.31835 4.34931 4.39447 4.39844 4.44200 4.49926 4.51915 4.58536 4.61647 4.72485 4.73153 4.79680 4.80803 4.91181 4.92715 4.99747 5.01869 5.07371 5.10478 5.16271 5.17985 5.45209 5.51409 5.60385 5.65752 5.77756 5.95838 6.01168 6.15361 6.21711 6.24888 6.30059 6.81595 6.91187 7.39910 8.90409 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.002102 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.043427 B =13319.179389 C =14694.174259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.339 6.339 3 C 0.083 3.917 4 C -0.177 4.177 5 C -0.059 4.059 6 C -0.088 4.088 7 C 0.099 3.901 8 N -0.533 5.533 9 C 0.062 3.938 10 C 0.051 3.949 11 N -0.555 5.555 12 C 0.075 3.925 13 C 0.015 3.985 14 H 0.114 0.886 15 C 0.266 3.734 16 N -0.510 5.510 17 C 0.039 3.961 18 C -0.539 4.539 19 H 0.051 0.949 20 C 0.012 3.988 21 N -0.922 5.922 22 Si 0.947 3.053 23 H -0.266 1.266 24 H -0.283 1.283 25 H -0.277 1.277 26 C 0.057 3.943 27 C 0.062 3.938 28 C -0.114 4.114 29 C 0.033 3.967 30 F -0.153 7.153 31 H 0.069 0.931 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.027 0.973 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.003 0.997 46 H 0.264 0.736 47 H 0.049 0.951 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.032 0.968 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.717 -3.897 24.002 32.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.037 3.963 4 C -0.196 4.196 5 C -0.077 4.077 6 C -0.089 4.089 7 C -0.027 4.027 8 N -0.258 5.258 9 C -0.066 4.066 10 C -0.077 4.077 11 N -0.280 5.280 12 C -0.054 4.054 13 C -0.007 4.007 14 H 0.131 0.869 15 C -0.050 4.050 16 N -0.188 5.188 17 C 0.000 4.000 18 C -0.577 4.577 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.561 5.561 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.203 1.203 26 C -0.070 4.070 27 C -0.065 4.065 28 C -0.133 4.133 29 C 0.013 3.987 30 F -0.131 7.131 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.183 0.817 35 H 0.179 0.821 36 H 0.130 0.870 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.125 0.875 50 H 0.050 0.950 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.098 -4.052 24.633 32.049 hybrid contribution 0.746 -1.001 -1.192 1.726 sum -19.351 -5.053 23.441 30.813 Atomic orbital electron populations 1.23427 0.75638 1.05789 1.02844 1.86106 1.24206 1.26280 1.88728 1.19239 0.90608 0.86632 0.99843 1.21456 1.01563 0.90570 1.05977 1.21206 0.93435 0.98153 0.94928 1.19601 0.94051 0.93820 1.01418 1.21030 0.99481 0.93227 0.89012 1.62231 1.45610 1.02648 1.15321 1.22116 0.93557 0.97298 0.93664 1.22220 0.99257 0.89603 0.96597 1.62217 1.47096 1.03082 1.15619 1.22048 0.98163 0.97756 0.87404 1.19289 0.84460 1.02498 0.94424 0.86855 1.29120 0.94439 0.91055 0.90434 1.80806 1.13478 1.10941 1.13551 1.18979 0.97379 0.95602 0.87996 1.21523 1.33855 1.06870 0.95466 0.93033 1.25695 0.96982 0.97367 0.98642 1.70028 1.46984 1.28531 1.10604 0.85709 0.79065 0.79629 0.78269 1.19151 1.20855 1.20252 1.22214 0.93995 0.96773 0.94059 1.22192 0.99546 0.88750 0.96045 1.21022 1.01102 0.90030 1.01173 1.17325 0.86851 0.82887 1.11588 1.91447 1.76967 1.50034 1.94698 0.91202 0.86617 0.90772 0.81695 0.82133 0.86975 0.93880 0.95450 0.90168 0.93260 0.91205 0.91364 0.90143 0.94667 0.97872 0.92671 0.93242 0.89427 0.87479 0.94998 0.84493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.54 10.36 -92.96 -0.96 -7.51 16 3 C 0.08 1.60 6.69 22.53 0.15 1.75 16 4 C -0.18 -2.26 9.04 22.36 0.20 -2.06 16 5 C -0.06 -0.69 9.69 22.26 0.22 -0.48 16 6 C -0.09 -1.32 4.90 -19.86 -0.10 -1.41 16 7 C 0.10 1.31 5.11 85.56 0.44 1.74 16 8 N -0.53 -9.09 4.70 -900.27 -4.23 -13.32 16 9 C 0.06 1.35 5.25 86.31 0.45 1.80 16 10 C 0.05 1.27 5.12 86.31 0.44 1.71 16 11 N -0.55 -14.14 4.44 -895.69 -3.98 -18.11 16 12 C 0.07 2.14 4.53 86.30 0.39 2.53 16 13 C 0.01 0.55 1.76 -12.60 -0.02 0.52 16 14 H 0.11 3.89 6.12 -2.38 -0.01 3.88 16 15 C 0.27 11.15 13.46 89.49 1.20 12.36 16 16 N -0.51 -23.38 18.51 19.96 0.37 -23.01 16 17 C 0.04 1.82 4.42 29.85 0.13 1.95 16 18 C -0.54 -28.87 8.60 25.60 0.22 -28.65 16 19 H 0.05 2.75 7.59 -2.91 -0.02 2.73 16 20 C 0.01 0.67 5.46 84.65 0.46 1.14 16 21 N -0.92 -53.05 13.29 21.45 0.28 -52.77 16 22 Si 0.95 43.90 29.54 68.60 2.03 45.93 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 C 0.06 1.10 5.62 86.31 0.48 1.58 16 27 C 0.06 1.00 5.61 86.31 0.48 1.48 16 28 C -0.11 -2.17 7.89 22.30 0.18 -1.99 16 29 C 0.03 0.75 7.31 22.45 0.16 0.91 16 30 F -0.15 -4.15 17.11 44.97 0.77 -3.38 16 31 H 0.07 0.44 7.66 -2.38 -0.02 0.42 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 34 H 0.17 1.08 6.30 -2.91 -0.02 1.07 16 35 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 36 H 0.11 0.93 7.97 -2.39 -0.02 0.91 16 37 H 0.04 0.61 8.06 -2.38 -0.02 0.59 16 38 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.74 5.95 -2.39 -0.01 1.73 16 40 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.07 1.93 5.86 -2.39 -0.01 1.92 16 42 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 44 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 46 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 47 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 49 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 50 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.14 2.53 7.99 -2.91 -0.02 2.51 16 Total: -1.00 -70.15 416.55 1.82 -68.33 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.93 Total: 7.68 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 6.61 Total: -3.84 kcal Atomic # 7 Polarization: -99.65 SS G_CDS: -7.55 Total: -107.21 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.96 Total: -7.51 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.77 Total: -3.38 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.15 1.82 -68.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025232574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.612 kcal (2) G-P(sol) polarization free energy of solvation -70.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds