Wall clock time and date at job start Tue Mar 31 2020 05:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42912 * 1 3 3 C 1.35952 * 117.00139 * 2 1 4 4 C 1.38668 * 120.06003 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96571 * 179.74936 * 4 3 2 6 6 C 1.38257 * 120.09872 * 0.52986 * 5 4 3 7 7 C 1.50698 * 119.94137 * 179.76680 * 6 5 4 8 8 N 1.46903 * 109.47312 * 269.72354 * 7 6 5 9 9 C 1.46953 * 110.99903 * 189.99851 * 8 7 6 10 10 C 1.53055 * 109.36332 * 183.18885 * 9 8 7 11 11 N 1.46952 * 109.36302 * 301.59692 * 10 9 8 12 12 C 1.46904 * 110.99966 * 183.18465 * 11 10 9 13 13 C 1.53005 * 109.46604 * 75.76174 * 12 11 10 14 14 H 1.08999 * 109.47050 * 304.79625 * 13 12 11 15 15 C 1.47200 * 109.47182 * 64.79976 * 13 12 11 16 16 N 9.79036 * 152.48891 * 94.34574 * 3 1 2 17 17 C 1.53002 * 109.46599 * 184.80251 * 13 12 11 18 18 C 1.50702 * 109.46839 * 175.00267 * 17 13 12 19 19 H 1.08004 * 119.99909 * 359.97438 * 18 17 13 20 20 C 1.37871 * 120.00113 * 179.72402 * 18 17 13 21 21 N 1.31519 * 119.99939 * 0.26764 * 20 18 17 22 22 Si 1.86796 * 120.00331 * 180.27131 * 20 18 17 23 23 H 1.48494 * 109.47332 * 89.99788 * 22 20 18 24 24 H 1.48501 * 109.47194 * 209.99727 * 22 20 18 25 25 H 1.48500 * 109.47034 * 329.99784 * 22 20 18 26 26 C 1.46967 * 110.88063 * 59.32206 * 11 10 9 27 27 C 1.46952 * 110.99893 * 313.79635 * 8 7 6 28 28 C 1.38262 * 120.12643 * 359.49003 * 6 5 4 29 29 C 1.38332 * 120.02614 * 0.23478 * 28 6 5 30 30 F 1.35099 * 120.04986 * 180.02562 * 29 28 6 31 31 H 1.09002 * 109.46886 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46949 * 300.00330 * 1 2 3 33 33 H 1.08992 * 109.46656 * 60.00348 * 1 2 3 34 34 H 1.08000 * 120.01473 * 0.04228 * 4 3 2 35 35 H 1.08006 * 119.95078 * 180.29782 * 5 4 3 36 36 H 1.09003 * 109.47119 * 149.72068 * 7 6 5 37 37 H 1.08998 * 109.47003 * 29.72485 * 7 6 5 38 38 H 1.09004 * 109.49002 * 63.22391 * 9 8 7 39 39 H 1.09003 * 109.48749 * 303.15628 * 9 8 7 40 40 H 1.09001 * 109.48575 * 181.63000 * 10 9 8 41 41 H 1.09001 * 109.48594 * 61.56319 * 10 9 8 42 42 H 1.08993 * 109.46941 * 315.76282 * 12 11 10 43 43 H 1.09001 * 109.47274 * 195.75930 * 12 11 10 44 44 H 1.08994 * 109.47761 * 54.99617 * 17 13 12 45 45 H 1.09005 * 109.46866 * 294.99089 * 17 13 12 46 46 H 0.97001 * 120.00091 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.48585 * 60.64102 * 26 11 10 48 48 H 1.08994 * 109.48979 * 180.71062 * 26 11 10 49 49 H 1.08999 * 109.49403 * 296.78160 * 27 8 7 50 50 H 1.09007 * 109.48702 * 56.84185 * 27 8 7 51 51 H 1.08000 * 119.99136 * 180.25785 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2113 0.0000 4 6 1.2924 2.3751 -0.0005 5 6 1.9217 3.6052 0.0047 6 6 3.3024 3.6777 -0.0006 7 6 3.9850 5.0212 -0.0002 8 7 4.2074 5.4579 -1.3850 9 6 5.0763 6.6422 -1.4306 10 6 5.2183 7.1119 -2.8804 11 7 5.7754 6.0218 -3.6934 12 6 5.9977 6.4585 -5.0782 13 6 7.2450 7.3425 -5.1402 14 1 7.1394 8.1696 -4.4382 15 6 8.4298 6.5448 -4.7841 16 7 9.3441 5.9294 -4.5094 17 6 7.4089 7.8944 -6.5577 18 6 8.5647 8.8610 -6.5898 19 1 9.1259 9.0619 -5.6892 20 6 8.9090 9.4850 -7.7701 21 7 8.2254 9.2407 -8.8668 22 14 10.3463 10.6773 -7.8116 23 1 11.5943 9.9374 -8.1279 24 1 10.1045 11.7080 -8.8530 25 1 10.4827 11.3345 -6.4870 26 6 4.9064 4.8375 -3.6477 27 6 4.7645 4.3679 -2.1980 28 6 4.0581 2.5199 -0.0005 29 6 3.4334 1.2856 0.0000 30 9 4.1714 0.1539 0.0006 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 0.2138 2.3200 -0.0003 35 1 1.3342 4.5115 0.0091 36 1 4.9429 4.9419 0.5141 37 1 3.3560 5.7482 0.5136 38 1 6.0588 6.3879 -1.0329 39 1 4.6363 7.4394 -0.8315 40 1 5.8857 7.9728 -2.9200 41 1 4.2394 7.3919 -3.2694 42 1 5.1332 7.0254 -5.4236 43 1 6.1386 5.5860 -5.7162 44 1 6.4957 8.4099 -6.8548 45 1 7.6033 7.0729 -7.2473 46 1 8.4678 9.6794 -9.6973 47 1 3.9240 5.0918 -4.0454 48 1 5.3464 4.0403 -4.2468 49 1 5.7434 4.0877 -1.8090 50 1 4.0971 3.5069 -2.1583 51 1 5.1364 2.5790 -0.0004 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025232579.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:31 Heat of formation + Delta-G solvation = -40.314200 kcal Electronic energy + Delta-G solvation = -31711.371605 eV Core-core repulsion = 27331.778746 eV Total energy + Delta-G solvation = -4379.592859 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.191 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.87254 -41.24686 -40.38303 -38.99052 -37.96470 -36.29828 -35.36914 -33.55226 -32.19825 -31.76720 -31.48067 -29.44476 -28.41987 -27.30133 -25.26974 -24.64022 -23.83598 -23.74200 -23.21354 -22.12186 -20.65006 -19.29701 -18.54908 -18.19252 -17.96494 -17.83298 -17.33075 -17.06242 -16.57006 -16.07418 -16.01577 -15.87495 -15.83888 -15.70059 -15.64895 -15.32657 -15.19853 -14.78833 -14.52671 -14.36635 -14.16839 -13.96261 -13.75055 -13.44632 -13.22058 -13.15781 -13.03418 -12.93828 -12.75737 -12.69459 -12.48060 -12.41864 -12.36008 -12.16588 -12.11702 -12.05671 -11.92791 -11.73474 -11.55906 -11.32301 -11.04704 -10.54494 -9.94830 -9.42524 -9.21819 -9.06063 -8.18295 -6.26336 0.10255 0.15377 1.40507 1.43005 1.51905 2.07951 2.15609 2.18838 2.42230 2.43547 2.93804 3.08558 3.17189 3.20495 3.37334 3.60751 3.73430 3.95190 3.98733 4.05601 4.19543 4.24537 4.31826 4.36431 4.39176 4.42155 4.44528 4.48809 4.51252 4.59243 4.63991 4.72448 4.74647 4.80836 4.82674 4.89888 4.91986 4.96989 5.00595 5.05300 5.12639 5.15531 5.16583 5.48263 5.49742 5.62512 5.63184 5.80385 5.96164 6.00812 6.15974 6.24290 6.25056 6.27930 6.84525 6.94901 7.42077 8.92506 Molecular weight = 361.19amu Principal moments of inertia in cm(-1) A = 0.021563 B = 0.001702 C = 0.001687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.195987 B =16447.260573 C =16594.252178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.085 3.915 4 C -0.176 4.176 5 C -0.059 4.059 6 C -0.094 4.094 7 C 0.099 3.901 8 N -0.531 5.531 9 C 0.061 3.939 10 C 0.053 3.947 11 N -0.557 5.557 12 C 0.074 3.926 13 C 0.025 3.975 14 H 0.117 0.883 15 C 0.268 3.732 16 N -0.518 5.518 17 C 0.038 3.962 18 C -0.537 4.537 19 H 0.054 0.946 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.948 3.052 23 H -0.286 1.286 24 H -0.278 1.278 25 H -0.263 1.263 26 C 0.061 3.939 27 C 0.062 3.938 28 C -0.112 4.112 29 C 0.035 3.965 30 F -0.152 7.152 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.043 0.957 37 H 0.111 0.889 38 H 0.029 0.971 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.036 0.964 45 H -0.001 1.001 46 H 0.264 0.736 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.025 0.975 50 H 0.083 0.917 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.935 -11.342 21.724 33.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.039 3.961 4 C -0.195 4.195 5 C -0.078 4.078 6 C -0.094 4.094 7 C -0.028 4.028 8 N -0.256 5.256 9 C -0.067 4.067 10 C -0.075 4.075 11 N -0.282 5.282 12 C -0.055 4.055 13 C 0.003 3.997 14 H 0.134 0.866 15 C -0.048 4.048 16 N -0.196 5.196 17 C -0.001 4.001 18 C -0.575 4.575 19 H 0.072 0.928 20 C -0.188 4.188 21 N -0.563 5.563 22 Si 0.774 3.226 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.188 1.188 26 C -0.067 4.067 27 C -0.066 4.066 28 C -0.132 4.132 29 C 0.015 3.985 30 F -0.131 7.131 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.047 0.953 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.089 0.911 49 H 0.043 0.957 50 H 0.102 0.898 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.471 -12.456 21.976 33.153 hybrid contribution 0.979 0.345 -0.700 1.252 sum -20.493 -12.111 21.277 31.927 Atomic orbital electron populations 1.23437 0.75584 1.05830 1.02885 1.86112 1.24238 1.26220 1.88671 1.19233 0.90570 0.86635 0.99670 1.21459 1.01611 0.90498 1.05896 1.21215 0.93361 0.98238 0.94940 1.19592 0.94145 0.93780 1.01913 1.21095 0.99446 0.92936 0.89303 1.62387 1.47237 1.05643 1.10291 1.22188 0.94761 0.93265 0.96444 1.22285 0.98875 0.93526 0.92810 1.62109 1.48301 1.06940 1.10852 1.22020 0.95551 0.98656 0.89242 1.19163 0.85493 0.94916 1.00138 0.86578 1.29380 0.93601 0.91699 0.90127 1.80968 1.13141 1.12932 1.12518 1.18993 0.97104 0.94810 0.89170 1.21544 1.15515 1.25316 0.95168 0.92815 1.25708 0.98965 0.98578 0.95534 1.70033 1.41456 1.44446 1.00346 0.85705 0.79581 0.79014 0.78347 1.21192 1.20335 1.18771 1.22128 0.95340 0.92584 0.96686 1.22155 0.97505 0.94279 0.92659 1.21017 1.01053 0.90027 1.01073 1.17287 0.86823 0.82826 1.11557 1.91448 1.76966 1.49993 1.94689 0.86584 0.90811 0.91096 0.81626 0.82152 0.93848 0.87126 0.95258 0.87789 0.89764 0.92918 0.90905 0.90987 0.94546 0.98224 0.92749 0.93268 0.91105 0.95682 0.89831 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.23 16 2 O -0.34 -6.07 10.36 -93.00 -0.96 -7.03 16 3 C 0.09 1.53 6.69 22.53 0.15 1.68 16 4 C -0.18 -2.05 9.04 22.36 0.20 -1.84 16 5 C -0.06 -0.65 9.69 22.26 0.22 -0.43 16 6 C -0.09 -1.33 4.14 -19.85 -0.08 -1.41 16 7 C 0.10 1.29 5.43 85.56 0.46 1.76 16 8 N -0.53 -8.96 4.85 -900.27 -4.37 -13.33 16 9 C 0.06 1.08 5.58 86.31 0.48 1.56 16 10 C 0.05 1.10 5.43 86.31 0.47 1.57 16 11 N -0.56 -14.16 4.34 -895.69 -3.88 -18.05 16 12 C 0.07 2.12 4.37 86.30 0.38 2.49 16 13 C 0.02 0.89 2.27 -12.60 -0.03 0.86 16 14 H 0.12 3.81 6.74 -2.39 -0.02 3.79 16 15 C 0.27 11.22 13.66 89.44 1.22 12.44 16 16 N -0.52 -23.81 18.54 20.00 0.37 -23.44 16 17 C 0.04 1.75 4.42 29.85 0.13 1.88 16 18 C -0.54 -28.43 8.60 25.60 0.22 -28.21 16 19 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 20 C 0.01 0.61 5.46 84.65 0.46 1.07 16 21 N -0.92 -52.94 13.29 21.45 0.28 -52.65 16 22 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 26 C 0.06 1.37 5.57 86.31 0.48 1.85 16 27 C 0.06 1.27 4.64 86.31 0.40 1.67 16 28 C -0.11 -2.02 7.81 22.30 0.17 -1.85 16 29 C 0.03 0.74 7.31 22.45 0.16 0.90 16 30 F -0.15 -3.94 17.11 44.97 0.77 -3.17 16 31 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 33 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 34 H 0.17 0.91 6.30 -2.91 -0.02 0.89 16 35 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 36 H 0.04 0.61 8.02 -2.39 -0.02 0.59 16 37 H 0.11 0.99 8.08 -2.39 -0.02 0.97 16 38 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.79 6.72 -2.39 -0.02 1.77 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.87 7.99 -2.39 -0.02 1.85 16 43 H 0.07 2.13 7.84 -2.39 -0.02 2.11 16 44 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 46 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.67 8.00 -2.39 -0.02 1.65 16 49 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.08 1.65 5.85 -2.38 -0.01 1.64 16 51 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -69.54 417.29 1.78 -67.75 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.93 Total: 7.22 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 6.62 Total: -2.77 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -7.60 Total: -107.47 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.96 Total: -7.03 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.77 Total: -3.17 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.54 1.78 -67.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025232579.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.440 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds