Wall clock time and date at job start Tue Mar 31 2020 05:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.38065 * 110.99979 * 2 1 4 4 N 1.32408 * 119.46366 * 94.13217 * 3 2 1 5 5 C 1.32374 * 122.53556 * 180.02562 * 4 3 2 6 6 N 1.38072 * 119.46496 * 179.97438 * 5 4 3 7 7 C 1.40561 * 121.06813 * 0.02562 * 5 4 3 8 8 C 1.43203 * 120.61027 * 179.97438 * 7 5 4 9 9 N 6.70927 * 111.10196 * 1.99702 * 2 1 3 10 10 C 1.42277 * 118.77904 * 359.97438 * 7 5 4 11 11 C 1.40447 * 121.11402 * 180.02562 * 10 7 5 12 12 H 1.07996 * 120.00524 * 318.44344 * 11 10 7 13 13 C 1.40524 * 119.99830 * 138.45181 * 11 10 7 14 14 N 1.30490 * 119.99935 * 335.06110 * 13 11 10 15 15 Si 1.86797 * 119.99938 * 155.06816 * 13 11 10 16 16 H 1.48497 * 109.47418 * 59.99951 * 15 13 11 17 17 H 1.48497 * 109.47492 * 299.99525 * 15 13 11 18 18 H 1.48501 * 109.47201 * 179.97438 * 15 13 11 19 19 C 1.40530 * 119.46691 * 274.43250 * 3 2 1 20 20 C 1.43199 * 120.60770 * 359.97438 * 19 3 2 21 21 N 3.53871 * 90.56974 * 283.62792 * 2 1 3 22 22 C 1.46897 * 111.00147 * 123.95932 * 2 1 3 23 23 H 1.09007 * 109.63709 * 299.24096 * 22 2 1 24 24 C 1.53873 * 109.64861 * 178.80795 * 22 2 1 25 25 C 1.55049 * 106.62557 * 192.96266 * 24 22 2 26 26 S 1.83291 * 102.56303 * 42.43597 * 25 24 22 27 27 O 1.42102 * 109.35320 * 90.18645 * 26 25 24 28 28 O 1.42098 * 109.35383 * 223.25237 * 26 25 24 29 29 C 1.54165 * 109.64592 * 59.66410 * 22 2 1 30 30 H 1.09001 * 109.47060 * 56.53137 * 1 2 3 31 31 H 1.08997 * 109.47265 * 176.53649 * 1 2 3 32 32 H 1.09004 * 109.46884 * 296.53467 * 1 2 3 33 33 H 0.97002 * 119.99642 * 180.02562 * 6 5 4 34 34 H 0.96995 * 119.99901 * 0.03148 * 6 5 4 35 35 H 0.97004 * 120.00059 * 354.11919 * 14 13 11 36 36 H 1.08995 * 110.02609 * 312.26057 * 24 22 2 37 37 H 1.09008 * 110.02583 * 73.67671 * 24 22 2 38 38 H 1.08997 * 110.78921 * 160.70197 * 25 24 22 39 39 H 1.09002 * 110.79007 * 284.17062 * 25 24 22 40 40 H 1.08996 * 110.32372 * 266.66333 * 29 22 2 41 41 H 1.08999 * 110.32179 * 28.86460 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9638 1.2890 0.0000 4 7 2.2747 1.8672 1.1498 5 6 2.7527 3.0996 1.2206 6 7 3.0554 3.6408 2.4542 7 6 2.9562 3.8665 0.0604 8 6 3.4733 5.1990 0.1484 9 7 3.8845 6.2556 0.2181 10 6 2.6388 3.2945 -1.2031 11 6 2.8233 4.0166 -2.3936 12 1 2.5543 5.0615 -2.4386 13 6 3.3577 3.3793 -3.5262 14 7 4.1150 2.3259 -3.3856 15 14 2.9844 4.0401 -5.2330 16 1 3.4765 5.4369 -5.3417 17 1 1.5178 4.0126 -5.4647 18 1 3.6624 3.1964 -6.2497 19 6 2.1232 1.9682 -1.2199 20 6 1.7782 1.3355 -2.4573 21 7 1.5042 0.8337 -3.4389 22 6 1.9955 -0.7661 1.1375 23 1 1.6586 -0.3145 2.0706 24 6 3.5335 -0.7708 1.0906 25 6 4.0047 -1.8501 2.0992 26 16 2.8391 -3.2285 1.7816 27 8 3.3792 -4.0809 0.7812 28 8 2.4082 -3.7756 3.0202 29 6 1.4966 -2.2225 1.0568 30 1 -0.3633 0.5667 -0.8573 31 1 -0.3633 -1.0257 -0.0621 32 1 -0.3633 0.4591 0.9195 33 1 3.4058 4.5433 2.5151 34 1 2.9178 3.1186 3.2599 35 1 4.3790 2.0331 -2.4993 36 1 3.8755 -1.0231 0.0869 37 1 3.9189 0.2062 1.3823 38 1 5.0301 -2.1543 1.8893 39 1 3.9086 -1.4904 3.1237 40 1 0.5815 -2.3419 1.6367 41 1 1.3277 -2.5079 0.0185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025515840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:14 Heat of formation + Delta-G solvation = 28.017177 kcal Electronic energy + Delta-G solvation = -30552.737350 eV Core-core repulsion = 26367.114206 eV Total energy + Delta-G solvation = -4185.623145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.100 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.27750 -38.13882 -37.11122 -36.21445 -36.10291 -35.54030 -34.46073 -34.34094 -32.91840 -31.26207 -29.82787 -28.51199 -26.83677 -26.49657 -24.10659 -22.61120 -22.29067 -20.68947 -19.41961 -18.92128 -18.34549 -17.57251 -17.14120 -16.71143 -16.33587 -15.82234 -15.71693 -15.41514 -15.00029 -14.64090 -14.34879 -14.20002 -14.08436 -13.83769 -13.22810 -13.09498 -12.89414 -12.60447 -12.48651 -12.36978 -12.35013 -12.22750 -12.09539 -12.06892 -11.93751 -11.86912 -11.74932 -11.64496 -11.33172 -11.20484 -10.93991 -10.80805 -10.59572 -10.37884 -10.33681 -10.06441 -9.54212 -9.11515 -8.75900 -8.43719 -7.74780 -7.23791 -5.30393 -0.05264 1.44618 2.18427 2.39878 2.98940 3.06884 3.20629 3.45332 3.49710 3.54733 3.59286 3.74921 3.84649 3.97510 4.02028 4.22109 4.29493 4.42121 4.53021 4.66056 4.75532 4.94280 5.01915 5.05339 5.22670 5.28780 5.39342 5.41213 5.49562 5.57276 5.62188 5.91805 5.96111 6.01740 6.10665 6.31280 6.58999 6.78989 6.83771 7.22967 7.29862 7.46440 7.56886 7.84077 7.88379 8.10979 8.46294 8.70144 8.86181 9.53754 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.003845 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.229274 B = 7281.055920 C = 8654.671146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.476 5.476 3 C 0.410 3.590 4 N -0.643 5.643 5 C 0.499 3.501 6 N -0.849 5.849 7 C -0.267 4.267 8 C 0.302 3.698 9 N -0.496 5.496 10 C 0.193 3.807 11 C -0.476 4.476 12 H 0.097 0.903 13 C 0.043 3.957 14 N -0.736 5.736 15 Si 1.057 2.943 16 H -0.270 1.270 17 H -0.267 1.267 18 H -0.266 1.266 19 C -0.195 4.195 20 C 0.307 3.693 21 N -0.470 5.470 22 C 0.105 3.895 23 H 0.087 0.913 24 C -0.118 4.118 25 C -0.578 4.578 26 S 2.390 3.610 27 O -0.937 6.937 28 O -0.945 6.945 29 C -0.596 4.596 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.404 0.596 34 H 0.399 0.601 35 H 0.302 0.698 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.093 -5.373 10.098 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.196 5.196 3 C 0.181 3.819 4 N -0.371 5.371 5 C 0.258 3.742 6 N -0.390 5.390 7 C -0.282 4.282 8 C -0.009 4.009 9 N -0.175 5.175 10 C 0.182 3.818 11 C -0.503 4.503 12 H 0.115 0.885 13 C -0.186 4.186 14 N -0.356 5.356 15 Si 0.878 3.122 16 H -0.195 1.195 17 H -0.192 1.192 18 H -0.190 1.190 19 C -0.208 4.208 20 C -0.006 4.006 21 N -0.148 5.148 22 C -0.004 4.004 23 H 0.105 0.895 24 C -0.157 4.157 25 C -0.709 4.709 26 S 2.574 3.426 27 O -0.934 6.934 28 O -0.943 6.943 29 C -0.725 4.725 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.234 0.766 34 H 0.228 0.772 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.128 0.872 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.533 -6.605 7.575 10.365 hybrid contribution -0.375 1.883 2.167 2.896 sum -2.908 -4.722 9.742 11.210 Atomic orbital electron populations 1.22459 0.84185 1.02913 1.02030 1.59670 1.09181 1.09553 1.41243 1.18807 0.89298 0.86523 0.87238 1.66795 1.30670 1.11809 1.27850 1.17590 0.84935 0.87258 0.84367 1.42134 1.72620 1.18819 1.05429 1.16114 1.27014 0.91622 0.93461 1.25272 0.91430 0.92072 0.92107 1.81095 1.14858 1.12475 1.09093 1.17026 0.85594 0.88105 0.91063 1.20764 1.34472 1.00199 0.94912 0.88536 1.27259 0.92483 0.92808 1.06024 1.70370 1.18104 1.16238 1.30839 0.83705 0.78579 0.76784 0.73105 1.19513 1.19151 1.18988 1.16274 1.20691 0.97558 0.86319 1.24799 0.92167 0.91691 0.91920 1.80983 1.12452 1.10743 1.10609 1.21830 0.94248 0.89466 0.94852 0.89536 1.22312 0.93414 1.00861 0.99098 1.30533 1.15420 1.16359 1.08600 1.08977 0.79524 0.78282 0.75843 1.93628 1.77263 1.62816 1.59658 1.93596 1.81096 1.76664 1.42894 1.30719 1.17456 1.09491 1.14866 0.90476 0.90423 0.94046 0.76638 0.77201 0.88407 0.88810 0.87187 0.84436 0.84515 0.84470 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.11 60.07 0.55 0.92 16 2 N -0.48 -6.81 3.96 -172.06 -0.68 -7.49 16 3 C 0.41 6.88 4.86 -155.39 -0.75 6.12 16 4 N -0.64 -9.95 7.73 -11.33 -0.09 -10.04 16 5 C 0.50 8.01 7.74 -155.40 -1.20 6.80 16 6 N -0.85 -10.44 8.96 31.23 0.28 -10.16 16 7 C -0.27 -5.07 5.84 -105.54 -0.62 -5.69 16 8 C 0.30 5.94 13.17 -22.47 -0.30 5.64 16 9 N -0.50 -10.19 18.54 41.83 0.78 -9.41 16 10 C 0.19 4.04 4.92 -105.95 -0.52 3.52 16 11 C -0.48 -10.58 7.95 -37.89 -0.30 -10.88 16 12 H 0.10 2.16 7.82 -52.49 -0.41 1.75 16 13 C 0.04 0.96 3.94 -17.26 -0.07 0.89 16 14 N -0.74 -17.20 11.89 55.58 0.66 -16.54 16 15 Si 1.06 20.54 30.01 -169.99 -5.10 15.44 16 16 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 17 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 C -0.19 -3.87 5.11 -105.54 -0.54 -4.41 16 20 C 0.31 6.62 10.56 -22.47 -0.24 6.39 16 21 N -0.47 -10.73 18.53 41.84 0.78 -9.95 16 22 C 0.11 1.20 1.92 -66.65 -0.13 1.07 16 23 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 24 C -0.12 -1.34 5.23 -25.19 -0.13 -1.47 16 25 C -0.58 -4.92 7.31 38.24 0.28 -4.64 16 26 S 2.39 24.21 6.10 -107.50 -0.66 23.55 16 27 O -0.94 -13.12 18.14 -57.73 -1.05 -14.17 16 28 O -0.95 -12.09 18.15 -57.73 -1.05 -13.14 16 29 C -0.60 -5.48 5.46 37.77 0.21 -5.28 16 30 H 0.08 1.08 7.62 -51.93 -0.40 0.69 16 31 H 0.08 0.78 6.95 -51.93 -0.36 0.42 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.40 4.85 7.62 -40.82 -0.31 4.54 16 34 H 0.40 3.91 8.94 -40.82 -0.37 3.54 16 35 H 0.30 7.06 7.30 -40.82 -0.30 6.76 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.11 1.37 6.78 -51.92 -0.35 1.02 16 38 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.14 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.15 1.41 7.91 -51.93 -0.41 1.00 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -30.26 365.78 -8.59 -38.85 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -4.21 Total: 8.57 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.76 Total: -1.02 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 1.72 Total: -63.60 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -2.10 Total: -27.31 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.10 Total: 15.44 kcal Atomic # 16 Polarization: 24.21 SS G_CDS: -0.66 Total: 23.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.26 -8.59 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025515840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.871 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds