Wall clock time and date at job start Tue Mar 31 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.38065 * 110.99979 * 2 1 4 4 N 1.32408 * 119.46366 * 94.13217 * 3 2 1 5 5 C 1.32374 * 122.53556 * 180.02562 * 4 3 2 6 6 N 1.38072 * 119.46496 * 179.97438 * 5 4 3 7 7 C 1.40561 * 121.06813 * 0.02562 * 5 4 3 8 8 C 1.43203 * 120.61027 * 179.97438 * 7 5 4 9 9 N 6.70927 * 111.10196 * 1.99702 * 2 1 3 10 10 C 1.42277 * 118.77904 * 359.97438 * 7 5 4 11 11 C 1.40447 * 121.11402 * 180.02562 * 10 7 5 12 12 H 1.07996 * 120.00524 * 318.44344 * 11 10 7 13 13 C 1.40524 * 119.99830 * 138.45181 * 11 10 7 14 14 N 1.30490 * 119.99935 * 335.06110 * 13 11 10 15 15 Si 1.86797 * 119.99938 * 155.06816 * 13 11 10 16 16 H 1.48497 * 109.47418 * 59.99951 * 15 13 11 17 17 H 1.48497 * 109.47492 * 299.99525 * 15 13 11 18 18 H 1.48501 * 109.47201 * 179.97438 * 15 13 11 19 19 C 1.40530 * 119.46691 * 274.43250 * 3 2 1 20 20 C 1.43199 * 120.60770 * 359.97438 * 19 3 2 21 21 N 3.53871 * 90.56974 * 283.62792 * 2 1 3 22 22 C 1.46897 * 111.00147 * 123.95932 * 2 1 3 23 23 H 1.09007 * 109.63709 * 299.24096 * 22 2 1 24 24 C 1.53873 * 109.64861 * 178.80795 * 22 2 1 25 25 C 1.55049 * 106.62557 * 192.96266 * 24 22 2 26 26 S 1.83291 * 102.56303 * 42.43597 * 25 24 22 27 27 O 1.42102 * 109.35320 * 90.18645 * 26 25 24 28 28 O 1.42098 * 109.35383 * 223.25237 * 26 25 24 29 29 C 1.54165 * 109.64592 * 59.66410 * 22 2 1 30 30 H 1.09001 * 109.47060 * 56.53137 * 1 2 3 31 31 H 1.08997 * 109.47265 * 176.53649 * 1 2 3 32 32 H 1.09004 * 109.46884 * 296.53467 * 1 2 3 33 33 H 0.97002 * 119.99642 * 180.02562 * 6 5 4 34 34 H 0.96995 * 119.99901 * 0.03148 * 6 5 4 35 35 H 0.97004 * 120.00059 * 354.11919 * 14 13 11 36 36 H 1.08995 * 110.02609 * 312.26057 * 24 22 2 37 37 H 1.09008 * 110.02583 * 73.67671 * 24 22 2 38 38 H 1.08997 * 110.78921 * 160.70197 * 25 24 22 39 39 H 1.09002 * 110.79007 * 284.17062 * 25 24 22 40 40 H 1.08996 * 110.32372 * 266.66333 * 29 22 2 41 41 H 1.08999 * 110.32179 * 28.86460 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9638 1.2890 0.0000 4 7 2.2747 1.8672 1.1498 5 6 2.7527 3.0996 1.2206 6 7 3.0554 3.6408 2.4542 7 6 2.9562 3.8665 0.0604 8 6 3.4733 5.1990 0.1484 9 7 3.8845 6.2556 0.2181 10 6 2.6388 3.2945 -1.2031 11 6 2.8233 4.0166 -2.3936 12 1 2.5543 5.0615 -2.4386 13 6 3.3577 3.3793 -3.5262 14 7 4.1150 2.3259 -3.3856 15 14 2.9844 4.0401 -5.2330 16 1 3.4765 5.4369 -5.3417 17 1 1.5178 4.0126 -5.4647 18 1 3.6624 3.1964 -6.2497 19 6 2.1232 1.9682 -1.2199 20 6 1.7782 1.3355 -2.4573 21 7 1.5042 0.8337 -3.4389 22 6 1.9955 -0.7661 1.1375 23 1 1.6586 -0.3145 2.0706 24 6 3.5335 -0.7708 1.0906 25 6 4.0047 -1.8501 2.0992 26 16 2.8391 -3.2285 1.7816 27 8 3.3792 -4.0809 0.7812 28 8 2.4082 -3.7756 3.0202 29 6 1.4966 -2.2225 1.0568 30 1 -0.3633 0.5667 -0.8573 31 1 -0.3633 -1.0257 -0.0621 32 1 -0.3633 0.4591 0.9195 33 1 3.4058 4.5433 2.5151 34 1 2.9178 3.1186 3.2599 35 1 4.3790 2.0331 -2.4993 36 1 3.8755 -1.0231 0.0869 37 1 3.9189 0.2062 1.3823 38 1 5.0301 -2.1543 1.8893 39 1 3.9086 -1.4904 3.1237 40 1 0.5815 -2.3419 1.6367 41 1 1.3277 -2.5079 0.0185 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025515840.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:13 Heat of formation + Delta-G solvation = 6.166712 kcal Electronic energy + Delta-G solvation = -30553.684857 eV Core-core repulsion = 26367.114206 eV Total energy + Delta-G solvation = -4186.570652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.100 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.59432 -39.34949 -38.04299 -37.74968 -37.09688 -36.99061 -36.00324 -35.56560 -34.14020 -32.73821 -30.82647 -29.74297 -28.10611 -27.82401 -25.14667 -23.90570 -23.62377 -21.80512 -20.99476 -19.78683 -19.69822 -18.80030 -18.26550 -17.71652 -17.58297 -17.09676 -16.62223 -16.51764 -16.18773 -16.02190 -15.77652 -15.32693 -15.16853 -14.91710 -14.69456 -14.26550 -14.13986 -14.09915 -13.95211 -13.63964 -13.54388 -13.53501 -13.47369 -13.20660 -13.17508 -13.01459 -12.87425 -12.75964 -12.59112 -12.47638 -12.19074 -12.14676 -11.92013 -11.70121 -11.36608 -11.22685 -11.05861 -10.53102 -10.24649 -9.65612 -9.42472 -8.60034 -6.95990 -0.86054 0.01433 0.61202 1.40781 1.51417 1.60804 1.65388 1.96925 2.01824 2.17194 2.32352 2.41054 2.59068 2.67168 2.76683 2.78788 3.16220 3.41386 3.46965 3.54476 3.68800 3.74132 3.80086 4.00082 4.08265 4.16807 4.42470 4.54429 4.57127 4.66369 4.73551 4.86127 4.91604 4.99532 5.02067 5.13095 5.14834 5.25239 5.61538 5.72331 5.76825 6.15302 6.21077 6.36865 6.50808 6.66457 6.91157 7.18474 7.40203 7.85184 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.011702 B = 0.003845 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.229274 B = 7281.055920 C = 8654.671146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.492 5.492 3 C 0.437 3.563 4 N -0.618 5.618 5 C 0.511 3.489 6 N -0.823 5.823 7 C -0.284 4.284 8 C 0.310 3.690 9 N -0.514 5.514 10 C 0.198 3.802 11 C -0.515 4.515 12 H 0.086 0.914 13 C 0.026 3.974 14 N -0.766 5.766 15 Si 1.080 2.920 16 H -0.251 1.251 17 H -0.267 1.267 18 H -0.273 1.273 19 C -0.229 4.229 20 C 0.320 3.680 21 N -0.506 5.506 22 C 0.099 3.901 23 H 0.107 0.893 24 C -0.125 4.125 25 C -0.558 4.558 26 S 2.405 3.595 27 O -0.981 6.981 28 O -0.970 6.970 29 C -0.584 4.584 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.417 0.583 35 H 0.293 0.707 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.784 -5.767 13.054 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.212 5.212 3 C 0.205 3.795 4 N -0.346 5.346 5 C 0.268 3.732 6 N -0.364 5.364 7 C -0.299 4.299 8 C 0.000 4.000 9 N -0.194 5.194 10 C 0.187 3.813 11 C -0.543 4.543 12 H 0.104 0.896 13 C -0.199 4.199 14 N -0.386 5.386 15 Si 0.899 3.101 16 H -0.175 1.175 17 H -0.192 1.192 18 H -0.197 1.197 19 C -0.243 4.243 20 C 0.008 3.992 21 N -0.185 5.185 22 C -0.009 4.009 23 H 0.124 0.876 24 C -0.164 4.164 25 C -0.690 4.690 26 S 2.592 3.408 27 O -0.978 6.978 28 O -0.967 6.967 29 C -0.715 4.715 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.240 0.760 34 H 0.250 0.750 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.169 0.831 39 H 0.183 0.817 40 H 0.186 0.814 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.222 -6.998 10.594 13.100 hybrid contribution -0.201 1.984 1.518 2.506 sum -3.424 -5.015 12.112 13.549 Atomic orbital electron populations 1.22550 0.82570 1.04613 1.01953 1.59608 1.10469 1.08098 1.43072 1.18943 0.86994 0.87082 0.86433 1.67029 1.29727 1.11087 1.26738 1.17668 0.83676 0.86994 0.84900 1.42074 1.70548 1.19078 1.04738 1.16216 1.28011 0.91672 0.93981 1.25368 0.90977 0.92081 0.91591 1.81093 1.15657 1.12966 1.09706 1.17211 0.84059 0.88587 0.91446 1.20709 1.37554 0.99930 0.96123 0.89633 1.27886 0.91648 0.92489 1.07828 1.70447 1.20103 1.17980 1.30064 0.83447 0.78362 0.77386 0.70946 1.17456 1.19176 1.19725 1.16406 1.23049 0.97901 0.86904 1.25080 0.91197 0.90968 0.91964 1.80954 1.14174 1.12030 1.11371 1.22039 0.94160 0.90288 0.94409 0.87558 1.22318 0.93715 1.01265 0.99097 1.30437 1.15396 1.13788 1.09375 1.08384 0.79553 0.78305 0.74540 1.93574 1.78248 1.65116 1.60876 1.93563 1.81673 1.77826 1.43683 1.30643 1.18199 1.07326 1.15324 0.92527 0.87705 0.92381 0.75990 0.75045 0.89450 0.90535 0.87966 0.83077 0.81708 0.81366 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.11 127.69 1.16 1.79 16 2 N -0.49 -12.95 3.96 -698.28 -2.76 -15.71 16 3 C 0.44 13.87 4.86 133.72 0.65 14.52 16 4 N -0.62 -17.21 7.73 -189.75 -1.47 -18.68 16 5 C 0.51 15.01 7.74 133.74 1.04 16.04 16 6 N -0.82 -17.20 8.96 -55.12 -0.49 -17.69 16 7 C -0.28 -10.51 5.84 -20.46 -0.12 -10.63 16 8 C 0.31 11.98 13.17 88.33 1.16 13.14 16 9 N -0.51 -20.82 18.54 19.00 0.35 -20.46 16 10 C 0.20 8.35 4.92 -20.73 -0.10 8.25 16 11 C -0.51 -23.61 7.95 23.37 0.19 -23.42 16 12 H 0.09 3.99 7.82 -2.91 -0.02 3.96 16 13 C 0.03 1.20 3.94 85.45 0.34 1.53 16 14 N -0.77 -37.10 11.89 21.92 0.26 -36.84 16 15 Si 1.08 42.53 30.01 68.60 2.06 44.59 16 16 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 17 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 19 C -0.23 -9.09 5.11 -20.46 -0.10 -9.19 16 20 C 0.32 14.05 10.56 88.33 0.93 14.99 16 21 N -0.51 -23.72 18.53 19.00 0.35 -23.37 16 22 C 0.10 1.92 1.92 45.61 0.09 2.01 16 23 H 0.11 1.70 7.69 -2.38 -0.02 1.68 16 24 C -0.12 -2.51 5.23 31.59 0.17 -2.35 16 25 C -0.56 -7.66 7.31 72.68 0.53 -7.13 16 26 S 2.41 43.33 6.10 -56.49 -0.34 42.98 16 27 O -0.98 -26.68 18.14 -127.47 -2.31 -28.99 16 28 O -0.97 -22.42 18.15 -127.47 -2.31 -24.74 16 29 C -0.58 -8.85 5.46 72.38 0.40 -8.46 16 30 H 0.06 1.51 7.62 -2.39 -0.02 1.49 16 31 H 0.10 1.75 6.95 -2.39 -0.02 1.73 16 32 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.41 8.47 7.62 -92.71 -0.71 7.76 16 34 H 0.42 6.19 8.94 -92.71 -0.83 5.36 16 35 H 0.29 14.24 7.30 -92.71 -0.68 13.57 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.10 2.25 6.78 -2.38 -0.02 2.23 16 38 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.16 1.41 8.14 -2.39 -0.02 1.40 16 40 H 0.17 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.15 2.43 7.91 -2.39 -0.02 2.41 16 Total: -1.00 -67.56 365.78 -0.65 -68.22 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.30 Total: 19.58 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.32 Total: 11.11 kcal Atomic # 7 Polarization: -128.99 SS G_CDS: -3.76 Total: -132.74 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -4.63 Total: -53.73 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.06 Total: 44.59 kcal Atomic # 16 Polarization: 43.33 SS G_CDS: -0.34 Total: 42.98 kcal Total: -67.56 -0.65 -68.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025515840.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.382 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds