Wall clock time and date at job start Tue Mar 31 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.38075 * 110.99962 * 2 1 4 4 N 1.32403 * 119.46426 * 57.73489 * 3 2 1 5 5 C 1.32370 * 122.53322 * 180.02562 * 4 3 2 6 6 N 1.38077 * 119.46573 * 180.02562 * 5 4 3 7 7 C 1.40561 * 121.06985 * 359.73649 * 5 4 3 8 8 C 1.43203 * 120.61308 * 180.28800 * 7 5 4 9 9 N 6.70935 * 110.10410 * 1.75215 * 2 1 3 10 10 C 1.42271 * 118.77550 * 0.51396 * 7 5 4 11 11 C 1.40454 * 121.11446 * 179.77659 * 10 7 5 12 12 H 1.08005 * 119.99922 * 137.63345 * 11 10 7 13 13 C 1.40521 * 120.00034 * 317.63265 * 11 10 7 14 14 N 1.30494 * 119.99627 * 335.36645 * 13 11 10 15 15 Si 1.86799 * 119.99817 * 155.36898 * 13 11 10 16 16 H 1.48498 * 109.47151 * 60.00288 * 15 13 11 17 17 H 1.48494 * 109.47310 * 299.99611 * 15 13 11 18 18 H 1.48501 * 109.46773 * 179.97438 * 15 13 11 19 19 C 1.40519 * 119.46154 * 237.75121 * 3 2 1 20 20 C 1.43198 * 120.61564 * 359.96200 * 19 3 2 21 21 N 3.53862 * 124.47135 * 271.53911 * 2 1 3 22 22 C 1.46906 * 111.00238 * 123.95764 * 2 1 3 23 23 H 1.08999 * 109.64333 * 186.74663 * 22 2 1 24 24 C 1.53883 * 109.64227 * 307.17401 * 22 2 1 25 25 C 1.54975 * 106.65481 * 167.15018 * 24 22 2 26 26 S 1.83287 * 102.48275 * 317.38365 * 25 24 22 27 27 O 1.42103 * 109.35246 * 269.90157 * 26 25 24 28 28 O 1.42093 * 109.47606 * 136.73567 * 26 25 24 29 29 C 1.54157 * 109.64599 * 66.31297 * 22 2 1 30 30 H 1.08993 * 109.47221 * 66.35891 * 1 2 3 31 31 H 1.08995 * 109.47046 * 186.36165 * 1 2 3 32 32 H 1.08997 * 109.46707 * 306.36205 * 1 2 3 33 33 H 0.96997 * 119.99522 * 359.97438 * 6 5 4 34 34 H 0.96993 * 120.00409 * 179.97438 * 6 5 4 35 35 H 0.96993 * 120.00527 * 359.73733 * 14 13 11 36 36 H 1.08994 * 110.02548 * 286.32316 * 24 22 2 37 37 H 1.09004 * 110.02489 * 47.74242 * 24 22 2 38 38 H 1.09000 * 110.75534 * 199.17376 * 25 24 22 39 39 H 1.09001 * 110.90800 * 75.65994 * 25 24 22 40 40 H 1.09005 * 110.32471 * 331.14910 * 29 22 2 41 41 H 1.09008 * 110.32036 * 93.33623 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9638 1.2890 0.0000 4 7 1.6227 2.1176 0.9748 5 6 2.0606 3.3653 1.0344 6 7 1.6647 4.1749 2.0806 7 6 2.9271 3.8777 0.0534 8 6 3.3998 5.2272 0.1308 9 7 3.7752 6.2976 0.1926 10 6 3.3218 3.0323 -1.0207 11 6 4.1819 3.4950 -2.0301 12 1 4.9786 2.8623 -2.3927 13 6 4.0058 4.7810 -2.5684 14 7 2.8342 5.3536 -2.5202 15 14 5.4489 5.6708 -3.3528 16 1 5.9621 4.8714 -4.4942 17 1 6.5273 5.8473 -2.3474 18 1 5.0040 7.0009 -3.8410 19 6 2.8210 1.7003 -1.0347 20 6 3.1839 0.7959 -2.0839 21 7 3.4718 0.0784 -2.9162 22 6 1.9955 -0.7661 1.1376 23 1 3.0786 -0.6530 1.1856 24 6 1.3634 -0.2533 2.4435 25 6 1.6984 -1.2971 3.5389 26 16 1.4131 -2.8866 2.6720 27 8 0.0612 -3.2854 2.8526 28 8 2.4649 -3.7904 2.9814 29 6 1.6368 -2.2559 0.9696 30 1 -0.3633 0.4121 -0.9413 31 1 -0.3633 -1.0213 0.1139 32 1 -0.3633 0.6093 0.8276 33 1 1.0700 3.8280 2.7639 34 1 1.9812 5.0902 2.1322 35 1 2.0840 4.8900 -2.1163 36 1 1.7894 0.7140 2.7097 37 1 0.2831 -0.1665 2.3263 38 1 1.0248 -1.1940 4.3896 39 1 2.7381 -1.2097 3.8545 40 1 0.7119 -2.3610 0.4024 41 1 2.4487 -2.7871 0.4728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025515845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:19 Heat of formation + Delta-G solvation = 32.736896 kcal Electronic energy + Delta-G solvation = -30369.623995 eV Core-core repulsion = 26184.205512 eV Total energy + Delta-G solvation = -4185.418482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.100 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -40.35952 -38.39146 -37.17100 -36.17663 -35.88049 -35.77649 -34.63537 -34.20745 -32.71083 -31.15083 -29.81177 -28.81474 -26.82687 -26.31239 -24.55820 -22.95765 -22.08133 -20.42895 -19.44556 -18.99505 -18.43381 -17.66677 -16.98709 -16.95020 -16.33963 -15.89403 -15.79233 -15.38049 -15.04751 -14.76630 -14.38370 -14.25630 -13.99957 -13.86794 -13.43320 -13.03264 -12.77487 -12.57738 -12.51465 -12.44119 -12.37654 -12.22598 -12.17552 -12.08489 -11.96641 -11.86328 -11.77971 -11.69284 -11.29155 -11.22358 -11.04621 -10.86299 -10.62410 -10.48417 -10.33121 -9.98551 -9.51318 -9.15192 -8.61127 -8.49428 -7.81428 -7.31055 -5.32149 -0.11748 1.38288 2.15344 2.34048 2.96313 3.04482 3.17778 3.42299 3.51486 3.59774 3.66017 3.72575 3.81847 3.86414 3.97531 4.21444 4.26769 4.34090 4.43365 4.55294 4.66722 4.83189 4.92366 5.08121 5.20374 5.25631 5.29944 5.38404 5.44847 5.52531 5.72941 5.74758 6.01750 6.05862 6.09646 6.33694 6.57427 6.77526 6.81748 7.19320 7.34678 7.42684 7.53723 7.84866 7.88265 8.08791 8.55883 8.63495 8.77238 9.51484 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.003203 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.689595 B = 8740.627685 C = 9647.188478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.475 5.475 3 C 0.403 3.597 4 N -0.638 5.638 5 C 0.493 3.507 6 N -0.848 5.848 7 C -0.256 4.256 8 C 0.296 3.704 9 N -0.475 5.475 10 C 0.189 3.811 11 C -0.475 4.475 12 H 0.099 0.901 13 C 0.042 3.958 14 N -0.742 5.742 15 Si 1.059 2.941 16 H -0.269 1.269 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.182 4.182 20 C 0.315 3.685 21 N -0.486 5.486 22 C 0.101 3.899 23 H 0.105 0.895 24 C -0.149 4.149 25 C -0.582 4.582 26 S 2.383 3.617 27 O -0.940 6.940 28 O -0.943 6.943 29 C -0.587 4.587 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.399 0.601 34 H 0.405 0.595 35 H 0.301 0.699 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -6.461 9.691 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.197 5.197 3 C 0.174 3.826 4 N -0.365 5.365 5 C 0.254 3.746 6 N -0.390 5.390 7 C -0.270 4.270 8 C -0.016 4.016 9 N -0.154 5.154 10 C 0.178 3.822 11 C -0.504 4.504 12 H 0.117 0.883 13 C -0.186 4.186 14 N -0.361 5.361 15 Si 0.881 3.119 16 H -0.194 1.194 17 H -0.192 1.192 18 H -0.191 1.191 19 C -0.196 4.196 20 C 0.002 3.998 21 N -0.164 5.164 22 C -0.008 4.008 23 H 0.123 0.877 24 C -0.188 4.188 25 C -0.713 4.713 26 S 2.566 3.434 27 O -0.937 6.937 28 O -0.940 6.940 29 C -0.717 4.717 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.227 0.773 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.163 0.837 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.751 -5.962 8.265 10.859 hybrid contribution -0.501 0.112 1.077 1.193 sum -4.252 -5.850 9.342 11.814 Atomic orbital electron populations 1.22558 0.85528 1.02090 1.03035 1.60155 1.09549 1.09700 1.40258 1.18824 0.89153 0.87127 0.87451 1.66859 1.35830 1.03999 1.29788 1.17609 0.85511 0.86778 0.84730 1.42134 1.55006 1.14714 1.27097 1.16122 1.17528 0.90939 1.02437 1.25084 0.92355 0.91979 0.92178 1.81048 1.11695 1.12330 1.10345 1.17075 0.87568 0.87642 0.89951 1.20788 1.12069 1.01388 1.16106 0.88316 1.27274 1.01540 0.94112 0.95720 1.70409 1.01125 1.39949 1.24632 0.83664 0.73866 0.77065 0.77319 1.19384 1.19167 1.19107 1.16422 1.11436 0.94595 0.97138 1.24965 0.91643 0.91359 0.91833 1.81022 1.11950 1.11605 1.11811 1.22042 1.01471 0.88854 0.88464 0.87658 1.23089 1.03760 1.00991 0.91006 1.30552 1.11554 1.19274 1.09881 1.09227 0.75436 0.78592 0.80121 1.93612 1.34463 1.81047 1.84617 1.93607 1.57193 1.60666 1.82496 1.30712 1.12786 1.05710 1.22482 0.90643 0.90994 0.92467 0.77257 0.76582 0.88533 0.86142 0.88882 0.84623 0.84535 0.83684 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.47 60.06 0.51 0.68 16 2 N -0.48 -6.50 4.04 -172.07 -0.70 -7.20 16 3 C 0.40 6.54 5.28 -155.39 -0.82 5.72 16 4 N -0.64 -9.61 7.11 -11.33 -0.08 -9.69 16 5 C 0.49 7.96 7.74 -155.40 -1.20 6.76 16 6 N -0.85 -10.72 8.96 31.23 0.28 -10.44 16 7 C -0.26 -4.95 5.06 -105.55 -0.53 -5.48 16 8 C 0.30 6.11 10.40 -22.47 -0.23 5.87 16 9 N -0.48 -10.35 18.54 41.84 0.78 -9.57 16 10 C 0.19 3.92 4.92 -105.95 -0.52 3.40 16 11 C -0.48 -10.54 7.94 -37.89 -0.30 -10.84 16 12 H 0.10 2.20 7.83 -52.48 -0.41 1.79 16 13 C 0.04 0.93 3.95 -17.26 -0.07 0.86 16 14 N -0.74 -17.22 12.08 55.58 0.67 -16.54 16 15 Si 1.06 20.40 30.00 -169.99 -5.10 15.30 16 16 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 19 C -0.18 -3.51 5.84 -105.55 -0.62 -4.13 16 20 C 0.31 6.46 13.93 -22.48 -0.31 6.14 16 21 N -0.49 -10.48 18.54 41.84 0.78 -9.70 16 22 C 0.10 1.11 2.58 -66.65 -0.17 0.94 16 23 H 0.11 1.18 8.05 -51.93 -0.42 0.76 16 24 C -0.15 -1.38 4.71 -25.23 -0.12 -1.50 16 25 C -0.58 -4.28 7.31 38.20 0.28 -4.00 16 26 S 2.38 22.48 6.10 -107.50 -0.66 21.83 16 27 O -0.94 -11.71 18.15 -57.73 -1.05 -12.75 16 28 O -0.94 -12.14 18.15 -57.73 -1.05 -13.19 16 29 C -0.59 -5.39 6.73 37.76 0.25 -5.13 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.67 6.00 -51.93 -0.31 0.36 16 32 H 0.06 0.64 6.05 -51.93 -0.31 0.32 16 33 H 0.40 3.98 8.94 -40.82 -0.37 3.61 16 34 H 0.40 5.13 7.62 -40.82 -0.31 4.82 16 35 H 0.30 7.02 7.00 -40.82 -0.29 6.73 16 36 H 0.12 1.26 6.58 -51.93 -0.34 0.92 16 37 H 0.09 0.81 5.95 -51.93 -0.31 0.50 16 38 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.15 1.23 5.99 -51.93 -0.31 0.92 16 41 H 0.14 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -29.91 360.42 -8.42 -38.32 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.87 Total: 8.91 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -3.86 Total: -0.71 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: 1.73 Total: -63.14 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -2.10 Total: -25.94 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.10 Total: 15.30 kcal Atomic # 16 Polarization: 22.48 SS G_CDS: -0.66 Total: 21.83 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.91 -8.42 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025515845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.062 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds