Wall clock time and date at job start Tue Mar 31 2020 05:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47098 * 2 1 4 4 C 1.52997 * 109.46984 * 239.99864 * 2 1 3 5 5 C 1.50702 * 109.47091 * 119.99845 * 2 1 3 6 6 C 1.38290 * 119.92494 * 59.99431 * 5 2 1 7 7 C 1.38101 * 120.07361 * 180.02562 * 6 5 2 8 8 C 1.38911 * 119.92576 * 359.97438 * 7 6 5 9 9 N 1.39770 * 120.07636 * 179.97438 * 8 7 6 10 10 C 1.38172 * 120.00214 * 147.17897 * 9 8 7 11 11 N 1.32424 * 119.46117 * 354.21547 * 10 9 8 12 12 C 1.32361 * 122.53002 * 180.02562 * 11 10 9 13 13 N 1.38082 * 119.46459 * 179.97438 * 12 11 10 14 14 C 1.40568 * 121.07305 * 359.97438 * 12 11 10 15 15 C 1.43197 * 120.61168 * 180.02562 * 14 12 11 16 16 N 9.42056 * 163.43625 * 89.58015 * 5 1 2 17 17 C 1.42283 * 118.77492 * 0.02562 * 14 12 11 18 18 C 1.40449 * 121.11462 * 179.97438 * 17 14 12 19 19 H 1.07998 * 119.99807 * 318.08544 * 18 17 14 20 20 C 1.40523 * 119.99788 * 137.80896 * 18 17 14 21 21 N 1.30483 * 120.00148 * 339.58449 * 20 18 17 22 22 Si 1.86805 * 119.99792 * 159.59080 * 20 18 17 23 23 H 1.48498 * 109.47254 * 59.99495 * 22 20 18 24 24 H 1.48495 * 109.47016 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46771 * 299.99904 * 22 20 18 26 26 C 1.40517 * 119.46517 * 174.47548 * 10 9 8 27 27 C 1.43199 * 120.61145 * 0.02562 * 26 10 9 28 28 N 9.10519 * 102.69461 * 121.11225 * 2 1 3 29 29 C 1.38916 * 119.85303 * 0.25559 * 8 7 6 30 30 C 1.38102 * 119.92235 * 359.51063 * 29 8 7 31 31 H 1.09003 * 109.47048 * 300.00330 * 1 2 3 32 32 H 1.08998 * 109.47110 * 60.00180 * 1 2 3 33 33 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47015 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.47313 * 299.99715 * 3 2 1 36 36 H 1.09003 * 109.47440 * 59.99911 * 3 2 1 37 37 H 1.09003 * 109.46967 * 300.00119 * 4 2 1 38 38 H 1.08998 * 109.47232 * 60.00031 * 4 2 1 39 39 H 1.08997 * 109.47301 * 180.02562 * 4 2 1 40 40 H 1.07996 * 119.96331 * 0.03051 * 6 5 2 41 41 H 1.08002 * 120.03553 * 179.97438 * 7 6 5 42 42 H 0.97005 * 119.99821 * 327.17803 * 9 8 7 43 43 H 0.96990 * 120.00060 * 180.02562 * 13 12 11 44 44 H 0.97003 * 119.99493 * 0.02562 * 13 12 11 45 45 H 0.97006 * 120.00095 * 185.38990 * 21 20 18 46 46 H 1.07997 * 120.04023 * 179.72481 * 29 8 7 47 47 H 1.07993 * 119.96635 * 180.25589 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.6972 -2.0343 1.4479 7 6 2.1554 -2.6881 2.5747 8 6 2.9542 -2.0146 3.4900 9 7 3.4193 -2.6731 4.6318 10 6 4.6532 -2.3485 5.1622 11 7 5.4356 -1.4966 4.5175 12 6 6.6284 -1.1436 4.9696 13 7 7.3922 -0.2500 4.2451 14 6 7.1304 -1.6635 6.1753 15 6 8.4221 -1.2743 6.6555 16 7 9.4441 -0.9633 7.0399 17 6 6.3313 -2.5836 6.9097 18 6 6.7846 -3.1337 8.1199 19 1 7.8101 -3.4587 8.2146 20 6 5.9053 -3.2557 9.2092 21 7 4.8239 -2.5272 9.2595 22 14 6.2847 -4.4608 10.5852 23 1 7.5837 -4.1049 11.2107 24 1 5.2092 -4.3995 11.6073 25 1 6.3625 -5.8363 10.0311 26 6 5.0597 -2.9319 6.3742 27 6 4.2082 -3.8567 7.0600 28 7 3.5309 -4.5898 7.6049 29 6 3.2851 -0.6833 3.2710 30 6 2.8275 -0.0368 2.1397 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.0766 -2.5576 0.7356 41 1 1.8930 -3.7220 2.7441 42 1 2.8757 -3.3580 5.0519 43 1 8.2676 0.0137 4.5690 44 1 7.0533 0.1138 3.4123 45 1 4.2576 -2.5536 10.0467 46 1 3.9022 -0.1554 3.9829 47 1 3.0877 0.9969 1.9667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025686434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:21 Heat of formation + Delta-G solvation = 100.099187 kcal Electronic energy + Delta-G solvation = -31196.142270 eV Core-core repulsion = 27149.867074 eV Total energy + Delta-G solvation = -4046.275196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.160 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.12081 -39.24205 -37.22166 -35.97189 -35.45220 -34.58347 -34.15690 -32.75135 -31.28120 -30.75166 -29.28820 -27.58979 -27.40454 -27.34451 -26.54433 -23.46924 -22.64380 -21.91369 -21.42270 -19.19871 -19.12659 -18.21621 -17.78417 -16.75230 -16.40163 -15.92588 -15.52462 -15.10828 -14.96211 -14.47845 -14.33621 -14.15772 -14.09381 -13.89447 -13.58047 -13.19704 -13.00459 -12.84445 -12.59987 -12.50234 -12.32793 -12.25139 -12.03251 -11.94389 -11.85705 -11.80744 -11.78822 -11.73252 -11.39184 -11.29252 -11.13646 -11.13235 -10.81154 -10.73014 -10.65174 -10.51542 -10.39783 -9.61306 -9.17636 -8.83816 -8.53515 -8.30533 -7.65845 -7.26208 -6.68814 -5.11567 1.46619 1.72500 2.07798 2.41310 2.93162 2.96281 3.02951 3.41049 3.68399 3.74595 3.77873 3.98127 4.11446 4.13677 4.35624 4.54400 4.61539 4.71415 4.93391 5.18583 5.22549 5.23698 5.29535 5.32921 5.45072 5.46342 5.49793 5.55302 5.64808 5.65400 5.74103 5.76349 5.87824 5.92103 5.97122 6.05048 6.16461 6.21319 6.23447 6.30823 6.54034 6.63021 6.68016 6.76510 6.88469 6.94591 7.14687 7.20046 7.52533 7.65565 7.79161 7.99433 8.05461 8.18902 8.30183 8.68659 8.87659 9.06160 9.68662 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.002785 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.968331 B =10050.045101 C =11559.390945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.024 4.024 3 C -0.143 4.143 4 C -0.137 4.137 5 C -0.105 4.105 6 C -0.097 4.097 7 C -0.161 4.161 8 C 0.178 3.822 9 N -0.661 5.661 10 C 0.495 3.505 11 N -0.637 5.637 12 C 0.512 3.488 13 N -0.848 5.848 14 C -0.281 4.281 15 C 0.308 3.692 16 N -0.504 5.504 17 C 0.254 3.746 18 C -0.445 4.445 19 H 0.099 0.901 20 C 0.086 3.914 21 N -0.744 5.744 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.255 1.255 26 C -0.238 4.238 27 C 0.324 3.676 28 N -0.505 5.505 29 C -0.110 4.110 30 C -0.103 4.103 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.414 0.586 43 H 0.404 0.596 44 H 0.399 0.601 45 H 0.295 0.705 46 H 0.142 0.858 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.256 5.143 -15.613 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.200 4.200 4 C -0.194 4.194 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.182 4.182 8 C 0.081 3.919 9 N -0.285 5.285 10 C 0.261 3.739 11 N -0.367 5.367 12 C 0.272 3.728 13 N -0.389 5.389 14 C -0.297 4.297 15 C -0.002 4.002 16 N -0.184 5.184 17 C 0.243 3.757 18 C -0.473 4.473 19 H 0.117 0.883 20 C -0.141 4.141 21 N -0.365 5.365 22 Si 0.731 3.269 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.179 1.179 26 C -0.254 4.254 27 C 0.013 3.987 28 N -0.185 5.185 29 C -0.131 4.131 30 C -0.122 4.122 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.252 0.748 43 H 0.234 0.766 44 H 0.228 0.772 45 H 0.107 0.893 46 H 0.159 0.841 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.256 4.911 -14.873 17.262 hybrid contribution 0.222 -0.736 1.241 1.460 sum -7.034 4.175 -13.633 15.899 Atomic orbital electron populations 1.21887 0.94212 1.01838 1.01516 1.19398 0.95247 0.94860 0.92936 1.21951 1.01293 0.95170 1.01586 1.21881 1.01321 1.00076 0.96155 1.19605 1.00188 0.94299 0.96548 1.20562 1.00074 0.94156 0.96737 1.20805 1.03139 0.99525 0.94733 1.17731 0.95565 0.91449 0.87149 1.41970 1.16900 1.41601 1.28008 1.17403 0.83395 0.86986 0.86164 1.66363 1.06887 1.26357 1.37135 1.17465 0.86080 0.84130 0.85161 1.42091 1.20594 1.49146 1.27060 1.16103 0.95035 1.15680 1.02896 1.25241 0.91798 0.91410 0.91781 1.81048 1.13473 1.13469 1.10450 1.16757 0.85961 0.83576 0.89429 1.19567 0.98552 1.34009 0.95199 0.88328 1.26009 0.92961 0.94544 1.00576 1.69505 1.09845 1.28174 1.28996 0.86284 0.79497 0.81651 0.79436 1.18388 1.19679 1.17944 1.15961 0.99854 1.11737 0.97808 1.24985 0.91393 0.91146 0.91180 1.81027 1.12354 1.14749 1.10388 1.21262 1.00326 0.92705 0.98771 1.20986 0.97540 0.99734 0.93922 0.92552 0.92819 0.92595 0.92200 0.92844 0.92282 0.92608 0.92845 0.92471 0.86678 0.86473 0.74832 0.76617 0.77204 0.89320 0.84070 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.29 37.16 0.31 -0.82 16 2 C -0.02 -0.22 0.85 -155.66 -0.13 -0.35 16 3 C -0.14 -1.16 7.13 37.15 0.26 -0.90 16 4 C -0.14 -1.14 8.29 37.16 0.31 -0.83 16 5 C -0.11 -1.20 4.77 -104.58 -0.50 -1.70 16 6 C -0.10 -1.13 8.70 -39.61 -0.34 -1.47 16 7 C -0.16 -2.13 9.96 -39.38 -0.39 -2.52 16 8 C 0.18 2.70 6.29 -83.74 -0.53 2.18 16 9 N -0.66 -11.09 5.37 -9.85 -0.05 -11.14 16 10 C 0.49 9.45 7.21 -155.28 -1.12 8.33 16 11 N -0.64 -11.46 6.98 -11.30 -0.08 -11.54 16 12 C 0.51 9.17 7.74 -155.40 -1.20 7.97 16 13 N -0.85 -11.74 8.96 31.23 0.28 -11.46 16 14 C -0.28 -5.78 5.84 -105.54 -0.62 -6.40 16 15 C 0.31 6.42 13.17 -22.49 -0.30 6.13 16 16 N -0.50 -10.86 18.53 41.81 0.77 -10.09 16 17 C 0.25 5.71 5.35 -105.95 -0.57 5.15 16 18 C -0.44 -10.43 7.97 -37.89 -0.30 -10.73 16 19 H 0.10 2.29 7.80 -52.49 -0.41 1.88 16 20 C 0.09 1.98 4.12 -17.26 -0.07 1.91 16 21 N -0.74 -17.59 11.14 55.58 0.62 -16.97 16 22 Si 0.91 18.38 29.61 -169.99 -5.03 13.35 16 23 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 26 C -0.24 -5.13 5.52 -105.55 -0.58 -5.71 16 27 C 0.32 7.24 10.36 -22.44 -0.23 7.01 16 28 N -0.51 -11.63 18.48 41.88 0.77 -10.85 16 29 C -0.11 -1.62 8.56 -39.38 -0.34 -1.96 16 30 C -0.10 -1.28 8.97 -39.61 -0.36 -1.64 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.45 7.38 -51.93 -0.38 0.07 16 34 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 35 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 37 H 0.05 0.45 7.38 -51.93 -0.38 0.07 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.12 1.13 7.09 -52.49 -0.37 0.75 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.41 6.73 7.62 -40.82 -0.31 6.42 16 43 H 0.40 5.35 7.62 -40.82 -0.31 5.03 16 44 H 0.40 4.60 8.95 -40.82 -0.37 4.24 16 45 H 0.30 6.60 8.30 -40.82 -0.34 6.26 16 46 H 0.14 2.27 6.25 -52.49 -0.33 1.95 16 47 H 0.12 1.30 5.88 -52.49 -0.31 0.99 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -25.76 397.53 -9.05 -34.81 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -5.62 Total: 14.25 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: -6.70 Total: 3.65 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: 2.32 Total: -72.05 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -25.76 -9.05 -34.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025686434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.910 kcal (2) G-P(sol) polarization free energy of solvation -25.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds