Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47098 * 2 1 4 4 C 1.52997 * 109.46984 * 239.99864 * 2 1 3 5 5 C 1.50702 * 109.47091 * 119.99845 * 2 1 3 6 6 C 1.38290 * 119.92494 * 59.99431 * 5 2 1 7 7 C 1.38101 * 120.07361 * 180.02562 * 6 5 2 8 8 C 1.38911 * 119.92576 * 359.97438 * 7 6 5 9 9 N 1.39770 * 120.07636 * 179.97438 * 8 7 6 10 10 C 1.38172 * 120.00214 * 147.17897 * 9 8 7 11 11 N 1.32424 * 119.46117 * 354.21547 * 10 9 8 12 12 C 1.32361 * 122.53002 * 180.02562 * 11 10 9 13 13 N 1.38082 * 119.46459 * 179.97438 * 12 11 10 14 14 C 1.40568 * 121.07305 * 359.97438 * 12 11 10 15 15 C 1.43197 * 120.61168 * 180.02562 * 14 12 11 16 16 N 9.42056 * 163.43625 * 89.58015 * 5 1 2 17 17 C 1.42283 * 118.77492 * 0.02562 * 14 12 11 18 18 C 1.40449 * 121.11462 * 179.97438 * 17 14 12 19 19 H 1.07998 * 119.99807 * 318.08544 * 18 17 14 20 20 C 1.40523 * 119.99788 * 137.80896 * 18 17 14 21 21 N 1.30483 * 120.00148 * 339.58449 * 20 18 17 22 22 Si 1.86805 * 119.99792 * 159.59080 * 20 18 17 23 23 H 1.48498 * 109.47254 * 59.99495 * 22 20 18 24 24 H 1.48495 * 109.47016 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46771 * 299.99904 * 22 20 18 26 26 C 1.40517 * 119.46517 * 174.47548 * 10 9 8 27 27 C 1.43199 * 120.61145 * 0.02562 * 26 10 9 28 28 N 9.10519 * 102.69461 * 121.11225 * 2 1 3 29 29 C 1.38916 * 119.85303 * 0.25559 * 8 7 6 30 30 C 1.38102 * 119.92235 * 359.51063 * 29 8 7 31 31 H 1.09003 * 109.47048 * 300.00330 * 1 2 3 32 32 H 1.08998 * 109.47110 * 60.00180 * 1 2 3 33 33 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47015 * 180.02562 * 3 2 1 35 35 H 1.09010 * 109.47313 * 299.99715 * 3 2 1 36 36 H 1.09003 * 109.47440 * 59.99911 * 3 2 1 37 37 H 1.09003 * 109.46967 * 300.00119 * 4 2 1 38 38 H 1.08998 * 109.47232 * 60.00031 * 4 2 1 39 39 H 1.08997 * 109.47301 * 180.02562 * 4 2 1 40 40 H 1.07996 * 119.96331 * 0.03051 * 6 5 2 41 41 H 1.08002 * 120.03553 * 179.97438 * 7 6 5 42 42 H 0.97005 * 119.99821 * 327.17803 * 9 8 7 43 43 H 0.96990 * 120.00060 * 180.02562 * 13 12 11 44 44 H 0.97003 * 119.99493 * 0.02562 * 13 12 11 45 45 H 0.97006 * 120.00095 * 185.38990 * 21 20 18 46 46 H 1.07997 * 120.04023 * 179.72481 * 29 8 7 47 47 H 1.07993 * 119.96635 * 180.25589 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.6972 -2.0343 1.4479 7 6 2.1554 -2.6881 2.5747 8 6 2.9542 -2.0146 3.4900 9 7 3.4193 -2.6731 4.6318 10 6 4.6532 -2.3485 5.1622 11 7 5.4356 -1.4966 4.5175 12 6 6.6284 -1.1436 4.9696 13 7 7.3922 -0.2500 4.2451 14 6 7.1304 -1.6635 6.1753 15 6 8.4221 -1.2743 6.6555 16 7 9.4441 -0.9633 7.0399 17 6 6.3313 -2.5836 6.9097 18 6 6.7846 -3.1337 8.1199 19 1 7.8101 -3.4587 8.2146 20 6 5.9053 -3.2557 9.2092 21 7 4.8239 -2.5272 9.2595 22 14 6.2847 -4.4608 10.5852 23 1 7.5837 -4.1049 11.2107 24 1 5.2092 -4.3995 11.6073 25 1 6.3625 -5.8363 10.0311 26 6 5.0597 -2.9319 6.3742 27 6 4.2082 -3.8567 7.0600 28 7 3.5309 -4.5898 7.6049 29 6 3.2851 -0.6833 3.2710 30 6 2.8275 -0.0368 2.1397 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.0766 -2.5576 0.7356 41 1 1.8930 -3.7220 2.7441 42 1 2.8757 -3.3580 5.0519 43 1 8.2676 0.0137 4.5690 44 1 7.0533 0.1138 3.4123 45 1 4.2576 -2.5536 10.0467 46 1 3.9022 -0.1554 3.9829 47 1 3.0877 0.9969 1.9667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025686434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = 89.943213 kcal Electronic energy + Delta-G solvation = -31196.582666 eV Core-core repulsion = 27149.867074 eV Total energy + Delta-G solvation = -4046.715592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.160 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.40485 -40.43712 -38.39092 -37.54469 -36.96331 -35.91854 -35.80693 -34.16174 -32.77165 -31.81836 -30.60140 -28.91307 -28.16043 -28.09088 -27.96795 -24.83896 -23.95349 -23.06976 -22.71130 -20.77945 -20.06061 -19.66076 -19.11976 -18.18919 -17.70305 -17.48862 -16.77583 -16.40142 -16.12722 -15.78925 -15.61413 -15.33373 -15.10508 -14.99643 -14.66603 -14.45224 -14.26023 -14.13398 -13.99773 -13.83439 -13.62271 -13.53108 -13.49553 -13.47807 -13.38298 -13.03587 -12.97976 -12.79176 -12.63120 -12.44198 -12.41213 -12.32811 -12.13631 -12.06207 -11.66821 -11.47258 -11.27984 -11.24411 -10.50908 -10.29149 -9.87297 -9.62093 -8.97537 -8.89814 -8.12037 -6.86191 0.14663 0.69198 0.70903 0.83935 1.27330 1.36336 1.40658 2.02427 2.04064 2.08763 2.20149 2.27751 2.61134 2.82060 2.85449 3.05798 3.59680 3.70460 3.81625 3.85649 3.97392 4.12017 4.24534 4.26502 4.32420 4.53497 4.59370 4.68310 4.77832 4.86018 4.90797 4.93629 4.97174 5.02817 5.09695 5.15665 5.18093 5.19207 5.27076 5.34632 5.38992 5.50405 5.53724 5.57614 5.63369 5.69937 5.93250 6.04737 6.09789 6.24303 6.39394 6.44066 6.56675 6.61454 6.83443 7.03875 7.18604 7.57502 7.98652 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.002785 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.968331 B =10050.045101 C =11559.390945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.025 4.025 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.096 4.096 7 C -0.160 4.160 8 C 0.147 3.853 9 N -0.655 5.655 10 C 0.506 3.494 11 N -0.624 5.624 12 C 0.522 3.478 13 N -0.823 5.823 14 C -0.300 4.300 15 C 0.316 3.684 16 N -0.520 5.520 17 C 0.248 3.752 18 C -0.477 4.477 19 H 0.091 0.909 20 C 0.062 3.938 21 N -0.771 5.771 22 Si 0.949 3.051 23 H -0.251 1.251 24 H -0.268 1.268 25 H -0.263 1.263 26 C -0.266 4.266 27 C 0.331 3.669 28 N -0.528 5.528 29 C -0.121 4.121 30 C -0.105 4.105 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.415 0.585 43 H 0.411 0.589 44 H 0.415 0.585 45 H 0.296 0.704 46 H 0.125 0.875 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.208 6.154 -18.491 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.025 4.025 3 C -0.201 4.201 4 C -0.193 4.193 5 C -0.098 4.098 6 C -0.115 4.115 7 C -0.181 4.181 8 C 0.052 3.948 9 N -0.278 5.278 10 C 0.269 3.731 11 N -0.355 5.355 12 C 0.279 3.721 13 N -0.364 5.364 14 C -0.316 4.316 15 C 0.006 3.994 16 N -0.201 5.201 17 C 0.237 3.763 18 C -0.506 4.506 19 H 0.109 0.891 20 C -0.162 4.162 21 N -0.393 5.393 22 Si 0.770 3.230 23 H -0.175 1.175 24 H -0.192 1.192 25 H -0.187 1.187 26 C -0.281 4.281 27 C 0.021 3.979 28 N -0.209 5.209 29 C -0.142 4.142 30 C -0.123 4.123 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.252 0.748 43 H 0.242 0.758 44 H 0.246 0.754 45 H 0.107 0.893 46 H 0.143 0.857 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.207 5.959 -17.803 20.489 hybrid contribution 0.438 -0.918 1.827 2.091 sum -7.769 5.041 -15.976 18.466 Atomic orbital electron populations 1.21881 0.93351 1.02164 1.01965 1.19473 0.95869 0.95171 0.91983 1.21957 1.01221 0.94660 1.02228 1.21872 1.00854 1.00311 0.96275 1.19968 0.98638 0.94255 0.96890 1.20861 0.99767 0.94400 0.96452 1.20996 1.02313 1.00139 0.94675 1.17946 0.97477 0.91991 0.87401 1.41974 1.15986 1.41421 1.28396 1.17493 0.84090 0.86135 0.85377 1.66586 1.06603 1.25866 1.36427 1.17557 0.86056 0.83917 0.84608 1.42004 1.20218 1.47277 1.26930 1.16165 0.94959 1.16416 1.04070 1.25281 0.91700 0.90976 0.91400 1.81040 1.13947 1.14222 1.10877 1.16974 0.86667 0.83330 0.89318 1.19627 0.98472 1.36219 0.96239 0.89147 1.26473 0.92812 0.95079 1.01868 1.69536 1.10761 1.29432 1.29584 0.85682 0.79761 0.79732 0.77807 1.17489 1.19199 1.18725 1.16057 0.99936 1.13019 0.99109 1.25165 0.91059 0.90882 0.90762 1.80993 1.13165 1.15683 1.11041 1.21202 1.00894 0.92660 0.99428 1.21176 0.97370 1.00520 0.93249 0.93259 0.91294 0.92361 0.92359 0.91416 0.92526 0.92419 0.91306 0.93203 0.84342 0.85425 0.74803 0.75827 0.75353 0.89310 0.85718 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.29 71.98 0.60 -1.19 16 2 C -0.02 -0.37 0.85 -52.93 -0.05 -0.41 16 3 C -0.14 -1.90 7.13 71.98 0.51 -1.38 16 4 C -0.14 -1.79 8.29 71.98 0.60 -1.20 16 5 C -0.10 -1.94 4.77 -19.84 -0.09 -2.03 16 6 C -0.10 -1.99 8.70 22.25 0.19 -1.80 16 7 C -0.16 -3.96 9.96 22.40 0.22 -3.74 16 8 C 0.15 4.33 6.29 38.20 0.24 4.57 16 9 N -0.65 -21.88 5.37 -185.07 -0.99 -22.87 16 10 C 0.51 19.37 7.21 133.68 0.96 20.33 16 11 N -0.62 -21.99 6.98 -189.66 -1.32 -23.31 16 12 C 0.52 18.23 7.74 133.74 1.04 19.26 16 13 N -0.82 -21.22 8.96 -55.11 -0.49 -21.71 16 14 C -0.30 -12.38 5.84 -20.46 -0.12 -12.50 16 15 C 0.32 13.20 13.17 88.34 1.16 14.36 16 16 N -0.52 -22.37 18.53 19.00 0.35 -22.01 16 17 C 0.25 11.43 5.35 -20.72 -0.11 11.32 16 18 C -0.48 -23.07 7.97 23.37 0.19 -22.88 16 19 H 0.09 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.06 2.91 4.12 85.45 0.35 3.26 16 21 N -0.77 -37.49 11.14 21.92 0.24 -37.25 16 22 Si 0.95 38.36 29.61 68.60 2.03 40.39 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C -0.27 -11.66 5.52 -20.47 -0.11 -11.78 16 27 C 0.33 15.18 10.36 88.32 0.91 16.10 16 28 N -0.53 -24.87 18.48 19.02 0.35 -24.52 16 29 C -0.12 -3.43 8.56 22.40 0.19 -3.24 16 30 C -0.10 -2.38 8.97 22.25 0.20 -2.18 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.74 7.38 -2.39 -0.02 0.72 16 34 H 0.06 0.79 7.51 -2.38 -0.02 0.77 16 35 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.06 0.78 7.51 -2.39 -0.02 0.76 16 37 H 0.06 0.74 7.38 -2.39 -0.02 0.72 16 38 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.14 2.22 7.09 -2.91 -0.02 2.20 16 41 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 42 H 0.41 13.58 7.62 -92.70 -0.71 12.88 16 43 H 0.41 10.08 7.62 -92.72 -0.71 9.37 16 44 H 0.41 8.49 8.95 -92.71 -0.83 7.66 16 45 H 0.30 13.62 8.30 -92.70 -0.77 12.85 16 46 H 0.13 3.93 6.25 -2.91 -0.02 3.91 16 47 H 0.14 2.63 5.88 -2.91 -0.02 2.61 16 Total: -1.00 -56.08 397.53 5.89 -50.19 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: -1.16 Total: 36.22 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.89 Total: 24.87 kcal Atomic # 7 Polarization: -149.81 SS G_CDS: -1.86 Total: -151.67 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -56.08 5.89 -50.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025686434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.135 kcal (2) G-P(sol) polarization free energy of solvation -56.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds