Wall clock time and date at job start Tue Mar 31 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35894 * 117.00255 * 2 1 4 4 C 1.38787 * 120.02771 * 359.97438 * 3 2 1 5 5 C 1.38159 * 120.05518 * 179.76634 * 4 3 2 6 6 C 1.38193 * 120.10857 * 0.51097 * 5 4 3 7 7 C 1.50702 * 119.97268 * 179.76615 * 6 5 4 8 8 H 1.09000 * 109.57221 * 220.75620 * 7 6 5 9 9 C 1.53255 * 109.57258 * 341.13522 * 7 6 5 10 10 H 1.08997 * 109.53765 * 54.31753 * 9 7 6 11 11 C 1.53025 * 109.12271 * 294.14208 * 9 7 6 12 12 C 1.52974 * 109.56439 * 180.50390 * 11 9 7 13 13 C 1.53017 * 109.38550 * 60.10457 * 12 11 9 14 14 C 1.52966 * 109.39558 * 299.82216 * 13 12 11 15 15 C 1.53034 * 109.57535 * 60.10211 * 14 13 12 16 16 O 1.42897 * 109.50119 * 60.25556 * 15 14 13 17 17 C 1.53105 * 109.19458 * 180.24711 * 15 14 13 18 18 C 1.52689 * 109.46012 * 181.09136 * 17 15 14 19 19 N 1.46889 * 109.57330 * 100.50611 * 7 6 5 20 20 C 1.36939 * 120.67005 * 6.49910 * 19 7 6 21 21 H 1.08001 * 119.99400 * 327.56274 * 20 19 7 22 22 C 1.38804 * 120.00265 * 147.55831 * 20 19 7 23 23 N 1.31621 * 120.00009 * 335.42544 * 22 20 19 24 24 Si 1.86803 * 120.00174 * 155.42531 * 22 20 19 25 25 H 1.48497 * 109.46821 * 89.99983 * 24 22 20 26 26 H 1.48496 * 109.47300 * 210.00207 * 24 22 20 27 27 H 1.48497 * 109.46886 * 330.00327 * 24 22 20 28 28 C 1.38747 * 120.05474 * 359.48998 * 6 5 4 29 29 O 1.35901 * 120.03059 * 180.23502 * 28 6 5 30 30 C 1.42897 * 117.00038 * 180.02562 * 29 28 6 31 31 C 1.38615 * 120.02729 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46870 * 59.99811 * 1 2 3 33 33 H 1.09003 * 109.47208 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.46848 * 299.99839 * 1 2 3 35 35 H 1.08005 * 119.97682 * 0.02562 * 4 3 2 36 36 H 1.08003 * 119.94329 * 180.25684 * 5 4 3 37 37 H 1.08993 * 109.45890 * 300.53385 * 11 9 7 38 38 H 1.09003 * 109.45526 * 60.47776 * 11 9 7 39 39 H 1.09001 * 109.48815 * 300.12684 * 12 11 9 40 40 H 1.09008 * 109.48416 * 180.08113 * 12 11 9 41 41 H 1.09002 * 109.47944 * 179.85167 * 13 12 11 42 42 H 1.08994 * 109.49549 * 59.80985 * 13 12 11 43 43 H 1.08997 * 109.45580 * 300.06903 * 14 13 12 44 44 H 1.09003 * 109.45245 * 180.12849 * 14 13 12 45 45 H 0.96701 * 114.00113 * 59.91948 * 16 15 14 46 46 H 1.08994 * 109.48677 * 301.20712 * 17 15 14 47 47 H 1.09004 * 109.48461 * 61.25892 * 17 15 14 48 48 H 1.09003 * 109.51617 * 185.60848 * 18 17 15 49 49 H 1.09008 * 109.42756 * 65.30653 * 18 17 15 50 50 H 0.97000 * 119.99849 * 354.24387 * 23 22 20 51 51 H 1.09003 * 109.47141 * 179.97438 * 30 29 28 52 52 H 1.08995 * 109.47447 * 299.99706 * 30 29 28 53 53 H 1.09001 * 109.47510 * 59.99861 * 30 29 28 54 54 H 1.07998 * 120.05426 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2908 2.3752 -0.0005 5 6 1.9174 3.6064 0.0043 6 6 3.2973 3.6820 -0.0009 7 6 3.9777 5.0267 -0.0009 8 1 4.8341 5.0026 -0.6748 9 6 2.9884 6.1026 -0.4618 10 1 2.0908 6.0609 0.1552 11 6 2.6215 5.8521 -1.9261 12 6 1.6434 6.9283 -2.4006 13 6 2.2998 8.3044 -2.2698 14 6 2.6625 8.5571 -0.8054 15 6 3.6394 7.4810 -0.3261 16 8 4.8272 7.5277 -1.1191 17 6 3.9916 7.7386 1.1415 18 6 4.9873 6.6839 1.6184 19 7 4.4303 5.3492 1.3588 20 6 4.3299 4.4265 2.3657 21 1 3.5152 3.7175 2.3690 22 6 5.2752 4.4023 3.3818 23 7 6.4818 4.8836 3.1698 24 14 4.8350 3.6869 5.0503 25 1 5.1465 2.2350 5.0640 26 1 5.6226 4.3722 6.1062 27 1 3.3858 3.8846 5.3068 28 6 4.0568 2.5209 -0.0004 29 8 5.4138 2.5958 -0.0007 30 6 6.1317 1.3603 -0.0007 31 6 3.4302 1.2839 -0.0005 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 0.2122 2.3188 -0.0005 36 1 1.3279 4.5114 0.0081 37 1 3.5233 5.8862 -2.5373 38 1 2.1558 4.8711 -2.0210 39 1 0.7420 6.8958 -1.7885 40 1 1.3819 6.7478 -3.4433 41 1 1.6051 9.0723 -2.6100 42 1 3.2032 8.3358 -2.8788 43 1 1.7589 8.5242 -0.1967 44 1 3.1281 9.5381 -0.7109 45 1 5.2928 8.3743 -1.0806 46 1 4.4342 8.7297 1.2406 47 1 3.0875 7.6816 1.7478 48 1 5.1625 6.8054 2.6873 49 1 5.9259 6.8000 1.0763 50 1 6.7372 5.1782 2.2816 51 1 7.2028 1.5625 -0.0014 52 1 5.8703 0.7881 0.8894 53 1 5.8698 0.7878 -0.8905 54 1 4.0197 0.3790 -0.0014 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026771640.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:49 Heat of formation + Delta-G solvation = -101.468156 kcal Electronic energy + Delta-G solvation = -36323.828867 eV Core-core repulsion = 32032.751727 eV Total energy + Delta-G solvation = -4291.077140 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.87656 -40.85836 -39.80004 -37.90915 -37.09815 -35.99969 -34.10664 -33.23963 -31.41677 -31.01758 -30.70169 -29.43081 -28.07412 -27.88062 -26.60270 -24.71330 -23.57535 -23.43650 -22.87527 -21.83947 -20.73235 -20.61936 -19.59089 -18.94124 -17.73441 -17.12359 -17.01536 -16.92335 -16.72206 -16.41844 -16.21950 -16.06775 -15.81430 -15.59767 -15.42988 -15.35953 -14.87064 -14.78324 -14.42472 -14.16985 -13.88746 -13.67223 -13.41661 -13.25296 -13.16026 -12.95124 -12.75472 -12.72570 -12.65296 -12.39202 -12.31792 -12.21137 -12.15567 -12.01976 -11.92752 -11.80234 -11.67865 -11.56344 -11.43293 -11.32831 -11.10820 -10.64182 -10.41642 -10.26705 -9.47506 -8.77590 -8.66268 -8.01085 -5.21065 0.45153 0.57477 1.53307 1.60719 1.77357 2.28337 2.59120 2.68225 2.83952 3.35979 3.45644 3.70280 3.74028 3.85740 3.89548 3.91850 4.10155 4.14699 4.20581 4.23266 4.31733 4.34487 4.37570 4.43404 4.47424 4.48986 4.54802 4.59888 4.61947 4.66310 4.67618 4.70907 4.73921 4.77144 4.82227 4.87643 5.02580 5.04937 5.10594 5.17964 5.23591 5.27747 5.34002 5.36508 5.41481 5.42325 5.44085 5.56798 5.64911 5.73736 5.82945 6.07362 6.41859 6.56823 6.63817 7.01691 7.26600 7.97682 8.45145 9.18923 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007466 B = 0.005745 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3749.492251 B = 4872.947172 C = 7088.583943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.152 3.848 4 C -0.245 4.245 5 C -0.042 4.042 6 C -0.136 4.136 7 C 0.240 3.760 8 H 0.001 0.999 9 C -0.073 4.073 10 H 0.076 0.924 11 C -0.104 4.104 12 C -0.112 4.112 13 C -0.109 4.109 14 C -0.136 4.136 15 C 0.150 3.850 16 O -0.566 6.566 17 C -0.153 4.153 18 C 0.171 3.829 19 N -0.596 5.596 20 C -0.304 4.304 21 H 0.039 0.961 22 C -0.075 4.075 23 N -0.946 5.946 24 Si 1.096 2.904 25 H -0.293 1.293 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.173 3.827 29 O -0.320 6.320 30 C 0.027 3.973 31 C -0.264 4.264 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.060 0.940 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.379 0.621 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.034 0.966 49 H -0.005 1.005 50 H 0.251 0.749 51 H 0.101 0.899 52 H 0.049 0.951 53 H 0.072 0.928 54 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.615 0.329 -11.531 17.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.107 3.893 4 C -0.263 4.263 5 C -0.060 4.060 6 C -0.137 4.137 7 C 0.135 3.865 8 H 0.018 0.982 9 C -0.093 4.093 10 H 0.094 0.906 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.146 4.146 14 C -0.173 4.173 15 C 0.110 3.890 16 O -0.372 6.372 17 C -0.193 4.193 18 C 0.046 3.954 19 N -0.319 5.319 20 C -0.434 4.434 21 H 0.057 0.943 22 C -0.271 4.271 23 N -0.589 5.589 24 Si 0.924 3.076 25 H -0.221 1.221 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.126 3.874 29 O -0.233 6.233 30 C -0.068 4.068 31 C -0.283 4.283 32 H 0.087 0.913 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.227 0.773 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.013 0.987 50 H 0.060 0.940 51 H 0.119 0.881 52 H 0.067 0.933 53 H 0.091 0.909 54 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.036 -0.585 -10.106 16.505 hybrid contribution 0.396 0.357 -0.913 1.057 sum -12.640 -0.228 -11.019 16.770 Atomic orbital electron populations 1.23360 0.76241 1.05559 1.02382 1.86001 1.23704 1.26500 1.88619 1.18627 0.91133 0.84917 0.94648 1.21256 1.00956 0.91130 1.12971 1.20846 0.92250 0.98163 0.94773 1.19245 0.93496 0.93432 1.07546 1.19020 0.92593 0.89047 0.85855 0.98168 1.21520 0.97382 0.93430 0.96943 0.90629 1.21486 0.99212 0.99154 0.94384 1.21513 0.97771 0.94235 1.01424 1.21415 1.00665 0.97047 0.95494 1.22169 0.99466 0.98035 0.97666 1.21010 0.84892 0.95098 0.88021 1.86570 1.40025 1.40527 1.70098 1.22577 1.00296 0.98785 0.97610 1.20453 0.93190 0.84736 0.97044 1.44304 1.73574 1.09561 1.04480 1.19769 1.06347 1.13787 1.03544 0.94343 1.26707 0.92327 1.01396 1.06699 1.70815 1.17901 1.45892 1.24277 0.83111 0.75334 0.75359 0.73845 1.22063 1.21715 1.20394 1.18730 0.82656 0.93244 0.92754 1.86243 1.15877 1.33487 1.87674 1.23134 0.97021 0.85141 1.01474 1.20407 0.93675 0.96930 1.17336 0.91265 0.86045 0.92095 0.82619 0.83915 0.93443 0.92182 0.91360 0.90933 0.90382 0.92293 0.90914 0.90588 0.77342 0.90663 0.91971 0.94724 0.98677 0.93973 0.88066 0.93278 0.90922 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -9.59 10.49 -92.36 -0.97 -10.56 16 3 C 0.15 5.11 6.68 22.49 0.15 5.26 16 4 C -0.24 -7.51 9.04 22.38 0.20 -7.30 16 5 C -0.04 -1.47 7.65 22.24 0.17 -1.30 16 6 C -0.14 -5.74 3.06 -19.75 -0.06 -5.80 16 7 C 0.24 10.68 1.98 44.26 0.09 10.77 16 8 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 9 C -0.07 -2.52 0.97 -10.69 -0.01 -2.53 16 10 H 0.08 2.62 6.35 -2.39 -0.02 2.60 16 11 C -0.10 -3.07 4.63 30.59 0.14 -2.93 16 12 C -0.11 -2.44 5.93 30.59 0.18 -2.26 16 13 C -0.11 -2.24 5.78 30.59 0.18 -2.07 16 14 C -0.14 -3.13 4.89 30.59 0.15 -2.98 16 15 C 0.15 4.73 0.55 -10.73 -0.01 4.72 16 16 O -0.57 -18.71 10.47 -148.98 -1.56 -20.26 16 17 C -0.15 -5.56 5.05 30.53 0.15 -5.41 16 18 C 0.17 8.33 4.51 86.19 0.39 8.72 16 19 N -0.60 -30.40 2.78 -680.27 -1.89 -32.30 16 20 C -0.30 -17.20 8.02 84.03 0.67 -16.52 16 21 H 0.04 2.27 6.71 -2.91 -0.02 2.25 16 22 C -0.07 -4.40 4.66 84.86 0.40 -4.01 16 23 N -0.95 -59.67 12.61 21.65 0.27 -59.40 16 24 Si 1.10 53.92 29.98 68.60 2.06 55.98 16 25 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.17 7.52 5.76 22.49 0.13 7.65 16 29 O -0.32 -14.87 9.65 -92.43 -0.89 -15.76 16 30 C 0.03 0.95 9.81 113.37 1.11 2.07 16 31 C -0.26 -10.03 8.97 22.46 0.20 -9.83 16 32 H 0.07 1.03 7.66 -2.39 -0.02 1.01 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.03 7.66 -2.39 -0.02 1.01 16 35 H 0.16 3.56 6.29 -2.91 -0.02 3.54 16 36 H 0.14 4.42 5.63 -2.91 -0.02 4.40 16 37 H 0.05 1.58 7.71 -2.39 -0.02 1.56 16 38 H 0.06 1.77 6.16 -2.39 -0.01 1.75 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.32 7.69 -2.39 -0.02 1.31 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.38 9.59 9.05 -74.06 -0.67 8.92 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.03 1.90 6.66 -2.39 -0.02 1.88 16 49 H 0.00 -0.25 7.57 -2.38 -0.02 -0.27 16 50 H 0.25 16.43 6.93 -92.71 -0.64 15.79 16 51 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 52 H 0.05 1.72 7.66 -2.39 -0.02 1.71 16 53 H 0.07 2.10 7.66 -2.39 -0.02 2.08 16 54 H 0.14 4.72 6.30 -2.91 -0.02 4.70 16 Total: -1.00 -75.80 399.62 2.74 -73.06 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.37 Total: 31.54 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 5.35 Total: -22.30 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -1.62 Total: -91.70 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -3.42 Total: -46.59 kcal Atomic # 14 Polarization: 53.92 SS G_CDS: 2.06 Total: 55.98 kcal Total: -75.80 2.74 -73.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026771640.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.406 kcal (2) G-P(sol) polarization free energy of solvation -75.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds