Wall clock time and date at job start Tue Mar 31 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35901 * 117.00252 * 2 1 4 4 C 1.38795 * 120.02289 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05252 * 179.70537 * 4 3 2 6 6 C 1.38196 * 120.10887 * 0.54566 * 5 4 3 7 7 C 1.50708 * 119.97267 * 179.72480 * 6 5 4 8 8 H 1.08995 * 109.56940 * 170.80855 * 7 6 5 9 9 C 1.53115 * 109.57201 * 291.05200 * 7 6 5 10 10 H 1.08996 * 109.46812 * 294.22292 * 9 7 6 11 11 C 1.52975 * 109.56304 * 54.27029 * 9 7 6 12 12 C 1.53016 * 109.40424 * 180.30603 * 11 9 7 13 13 C 1.52986 * 109.51364 * 300.15205 * 12 11 9 14 14 C 1.52984 * 109.55324 * 59.80294 * 13 12 11 15 15 C 1.53070 * 109.47473 * 174.24010 * 9 7 6 16 16 O 1.42900 * 109.54995 * 59.10049 * 15 9 7 17 17 C 1.53093 * 109.49991 * 298.94204 * 15 9 7 18 18 C 1.53167 * 109.36724 * 61.25497 * 17 15 9 19 19 N 1.46912 * 109.57058 * 50.42623 * 7 6 5 20 20 C 1.36932 * 120.66435 * 6.67134 * 19 7 6 21 21 H 1.08003 * 120.00120 * 326.33960 * 20 19 7 22 22 C 1.38814 * 120.00538 * 146.34490 * 20 19 7 23 23 N 1.31623 * 119.99407 * 350.61983 * 22 20 19 24 24 Si 1.86802 * 120.00464 * 170.62406 * 22 20 19 25 25 H 1.48503 * 109.46993 * 89.99736 * 24 22 20 26 26 H 1.48500 * 109.46983 * 209.99758 * 24 22 20 27 27 H 1.48497 * 109.46677 * 329.99807 * 24 22 20 28 28 C 1.38751 * 120.05549 * 359.46021 * 6 5 4 29 29 O 1.35896 * 120.02850 * 180.24600 * 28 6 5 30 30 C 1.42901 * 116.99823 * 179.97438 * 29 28 6 31 31 C 1.38605 * 120.03156 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47307 * 300.00209 * 1 2 3 33 33 H 1.08998 * 109.47273 * 60.00268 * 1 2 3 34 34 H 1.09000 * 109.47086 * 179.97438 * 1 2 3 35 35 H 1.07997 * 119.97296 * 359.96052 * 4 3 2 36 36 H 1.08008 * 119.94516 * 180.27910 * 5 4 3 37 37 H 1.08998 * 109.47991 * 60.32163 * 11 9 7 38 38 H 1.09001 * 109.49032 * 300.29229 * 11 9 7 39 39 H 1.08999 * 109.46155 * 60.16350 * 12 11 9 40 40 H 1.08995 * 109.46077 * 180.14491 * 12 11 9 41 41 H 1.08998 * 109.45858 * 179.82174 * 13 12 11 42 42 H 1.09007 * 109.45860 * 299.77357 * 13 12 11 43 43 H 1.08999 * 109.49076 * 179.97438 * 14 13 12 44 44 H 1.09000 * 109.50632 * 59.89346 * 14 13 12 45 45 H 0.96698 * 113.99884 * 179.97438 * 16 15 9 46 46 H 1.09009 * 109.49075 * 301.28880 * 17 15 9 47 47 H 1.08999 * 109.50737 * 181.23547 * 17 15 9 48 48 H 1.09000 * 109.59387 * 185.41539 * 18 17 15 49 49 H 1.09006 * 109.71172 * 65.04166 * 18 17 15 50 50 H 0.97001 * 119.99781 * 180.02562 * 23 22 20 51 51 H 1.08998 * 109.46791 * 60.00326 * 30 29 28 52 52 H 1.09006 * 109.46900 * 180.02562 * 30 29 28 53 53 H 1.08996 * 109.47437 * 300.00290 * 30 29 28 54 54 H 1.08006 * 120.05324 * 0.04114 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9171 3.6065 0.0067 6 6 3.2970 3.6821 0.0009 7 6 3.9773 5.0269 0.0014 8 1 5.0475 4.8946 0.1605 9 6 3.7407 5.7219 -1.3422 10 1 4.2383 5.1616 -2.1337 11 6 2.2393 5.7850 -1.6289 12 6 2.0074 6.4733 -2.9757 13 6 2.5815 7.8906 -2.9308 14 6 4.0820 7.8263 -2.6400 15 6 4.3082 7.1425 -1.2889 16 8 5.7071 7.0881 -1.0022 17 6 3.5917 7.9384 -0.1949 18 6 3.8325 7.2681 1.1612 19 7 3.4172 5.8614 1.0729 20 6 2.5264 5.3386 1.9719 21 1 1.8272 4.5772 1.6589 22 6 2.5217 5.7872 3.2855 23 7 3.4852 6.5740 3.7156 24 14 1.1481 5.2743 4.4429 25 1 1.5279 4.0166 5.1353 26 1 0.9223 6.3439 5.4480 27 1 -0.0979 5.0545 3.6655 28 6 4.0566 2.5210 0.0003 29 8 5.4135 2.5960 -0.0003 30 6 6.1316 1.3605 -0.0004 31 6 3.4301 1.2841 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2120 2.3187 0.0003 36 1 1.3276 4.5114 0.0117 37 1 1.7423 6.3509 -0.8409 38 1 1.8327 4.7743 -1.6623 39 1 2.5024 5.9056 -3.7636 40 1 0.9378 6.5210 -3.1796 41 1 2.4186 8.3789 -3.8916 42 1 2.0834 8.4595 -2.1456 43 1 4.4901 8.8365 -2.6087 44 1 4.5806 7.2564 -3.4240 45 1 6.1327 7.9551 -0.9539 46 1 2.5221 7.9623 -0.4039 47 1 3.9804 8.9564 -0.1715 48 1 3.2468 7.7747 1.9284 49 1 4.8913 7.3215 1.4148 50 1 3.4822 6.8872 4.6336 51 1 5.8695 0.7881 -0.8902 52 1 7.2027 1.5628 -0.0005 53 1 5.8703 0.7883 0.8897 54 1 4.0196 0.3791 0.0003 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026771641.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:54 Heat of formation + Delta-G solvation = -83.193018 kcal Electronic energy + Delta-G solvation = -36369.497961 eV Core-core repulsion = 32079.213290 eV Total energy + Delta-G solvation = -4290.284670 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.00682 -40.90489 -39.80903 -38.04572 -36.58368 -36.32200 -34.01932 -32.94873 -31.36767 -30.90418 -30.71602 -29.52719 -28.06131 -27.83841 -27.09170 -24.65920 -23.56524 -23.20109 -23.10132 -22.21936 -21.13284 -19.69877 -19.43198 -18.35557 -17.79246 -17.17870 -17.15293 -16.96971 -16.69069 -16.40036 -16.32300 -16.12556 -15.76413 -15.75152 -15.49501 -15.03663 -14.75305 -14.52272 -14.25923 -14.04211 -13.86294 -13.62289 -13.53881 -13.30512 -13.08585 -13.01188 -12.89840 -12.74256 -12.64381 -12.38507 -12.33848 -12.24289 -12.17939 -12.11375 -11.85547 -11.72741 -11.69138 -11.65315 -11.25894 -11.09401 -11.00515 -10.55043 -10.40502 -10.29238 -9.34518 -8.75871 -8.40185 -7.74685 -5.24183 0.49443 0.56421 1.43985 1.45776 1.53198 2.27350 2.54443 2.57642 2.82372 3.39049 3.43890 3.71876 3.85901 3.90182 3.97623 4.07773 4.16558 4.22997 4.29515 4.32126 4.38412 4.38971 4.40349 4.43794 4.46165 4.52874 4.61957 4.64926 4.66983 4.70493 4.74225 4.78112 4.81123 4.87659 4.94712 5.04520 5.10025 5.14259 5.18412 5.23908 5.31732 5.37054 5.40747 5.46869 5.50920 5.54218 5.58399 5.72296 5.73299 5.79425 5.84470 5.94554 6.39486 6.53403 6.59493 7.05636 7.30067 7.98854 8.56209 9.31781 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007536 B = 0.005398 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.662245 B = 5185.383230 C = 6535.988844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.155 3.845 4 C -0.257 4.257 5 C -0.014 4.014 6 C -0.146 4.146 7 C 0.231 3.769 8 H 0.007 0.993 9 C -0.066 4.066 10 H 0.054 0.946 11 C -0.112 4.112 12 C -0.115 4.115 13 C -0.114 4.114 14 C -0.133 4.133 15 C 0.145 3.855 16 O -0.575 6.575 17 C -0.156 4.156 18 C 0.191 3.809 19 N -0.588 5.588 20 C -0.245 4.245 21 H 0.090 0.910 22 C -0.052 4.052 23 N -0.939 5.939 24 Si 0.948 3.052 25 H -0.297 1.297 26 H -0.297 1.297 27 H -0.260 1.260 28 C 0.154 3.846 29 O -0.332 6.332 30 C 0.020 3.980 31 C -0.257 4.257 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.380 0.620 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.050 0.950 49 H -0.015 1.015 50 H 0.243 0.757 51 H 0.071 0.929 52 H 0.115 0.885 53 H 0.056 0.944 54 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -5.532 -15.133 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.109 3.891 4 C -0.276 4.276 5 C -0.032 4.032 6 C -0.147 4.147 7 C 0.125 3.875 8 H 0.024 0.976 9 C -0.086 4.086 10 H 0.073 0.927 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.151 4.151 14 C -0.171 4.171 15 C 0.105 3.895 16 O -0.382 6.382 17 C -0.195 4.195 18 C 0.065 3.935 19 N -0.311 5.311 20 C -0.375 4.375 21 H 0.107 0.893 22 C -0.247 4.247 23 N -0.587 5.587 24 Si 0.777 3.223 25 H -0.224 1.224 26 H -0.224 1.224 27 H -0.184 1.184 28 C 0.107 3.893 29 O -0.246 6.246 30 C -0.074 4.074 31 C -0.276 4.276 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.228 0.772 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.068 0.932 49 H 0.003 0.997 50 H 0.052 0.948 51 H 0.089 0.911 52 H 0.133 0.867 53 H 0.075 0.925 54 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.794 -6.143 -14.980 16.629 hybrid contribution -0.052 0.340 1.619 1.656 sum -3.846 -5.803 -13.360 15.065 Atomic orbital electron populations 1.23342 0.76455 1.05526 1.02239 1.85986 1.23478 1.26416 1.88597 1.18646 0.91441 0.84583 0.94424 1.21304 1.00944 0.91501 1.13824 1.20890 0.93027 0.97807 0.91447 1.19254 0.93668 0.93229 1.08541 1.19033 0.93142 0.86625 0.88696 0.97576 1.21255 0.96656 0.94255 0.96425 0.92717 1.21871 0.94140 1.01123 0.97797 1.21574 1.01303 0.95992 0.96419 1.21530 0.94288 0.97111 1.02221 1.22171 0.97967 1.00770 0.96177 1.21098 0.80232 0.94997 0.93189 1.86574 1.22380 1.34948 1.94307 1.22781 1.01430 0.98369 0.96869 1.20370 0.95153 0.84277 0.93661 1.44112 1.50267 1.05713 1.31055 1.19954 1.09349 1.19572 0.88669 0.89316 1.25901 0.99356 1.01203 0.98243 1.70170 1.33642 1.39435 1.15412 0.85547 0.80670 0.76639 0.79417 1.22445 1.22354 1.18406 1.18654 0.82702 0.93076 0.94823 1.86155 1.15510 1.34477 1.88420 1.23298 0.97314 0.84757 1.02057 1.20332 0.93205 0.96925 1.17184 0.92505 0.91378 0.85856 0.83327 0.84087 0.92008 0.91175 0.91903 0.90636 0.90051 0.91963 0.90624 0.91627 0.77193 0.90723 0.91565 0.93186 0.99653 0.94801 0.91072 0.86711 0.92523 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -9.29 10.49 -92.43 -0.97 -10.26 16 3 C 0.15 5.09 6.68 22.49 0.15 5.24 16 4 C -0.26 -8.41 9.04 22.38 0.20 -8.21 16 5 C -0.01 -0.52 4.33 22.24 0.10 -0.42 16 6 C -0.15 -6.16 4.12 -19.75 -0.08 -6.24 16 7 C 0.23 10.53 2.61 44.21 0.12 10.64 16 8 H 0.01 0.35 6.75 -2.39 -0.02 0.33 16 9 C -0.07 -2.43 1.79 -10.74 -0.02 -2.45 16 10 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 11 C -0.11 -3.57 3.33 30.59 0.10 -3.47 16 12 C -0.12 -2.78 5.92 30.59 0.18 -2.60 16 13 C -0.11 -2.57 5.64 30.58 0.17 -2.40 16 14 C -0.13 -3.36 5.10 30.62 0.16 -3.20 16 15 C 0.15 4.89 0.74 -10.71 -0.01 4.88 16 16 O -0.58 -20.94 11.79 -148.98 -1.76 -22.70 16 17 C -0.16 -5.75 4.35 30.68 0.13 -5.62 16 18 C 0.19 9.45 5.00 86.35 0.43 9.88 16 19 N -0.59 -29.73 2.42 -679.56 -1.65 -31.37 16 20 C -0.25 -13.25 8.17 84.03 0.69 -12.57 16 21 H 0.09 4.57 4.02 -2.91 -0.01 4.56 16 22 C -0.05 -2.99 5.06 84.86 0.43 -2.56 16 23 N -0.94 -57.34 11.15 21.65 0.24 -57.10 16 24 Si 0.95 45.82 29.56 68.60 2.03 47.84 16 25 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 27 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 28 C 0.15 6.14 6.66 22.49 0.15 6.29 16 29 O -0.33 -12.99 9.29 -92.39 -0.86 -13.85 16 30 C 0.02 0.53 9.81 113.37 1.11 1.65 16 31 C -0.26 -8.92 8.97 22.46 0.20 -8.72 16 32 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 33 H 0.07 1.10 7.66 -2.39 -0.02 1.08 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.15 3.92 6.29 -2.91 -0.02 3.90 16 36 H 0.14 5.44 4.89 -2.91 -0.01 5.42 16 37 H 0.06 2.22 5.61 -2.39 -0.01 2.21 16 38 H 0.07 2.24 4.98 -2.39 -0.01 2.23 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.06 1.49 6.40 -2.38 -0.02 1.47 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.38 10.60 9.05 -74.06 -0.67 9.93 16 46 H 0.07 2.70 4.73 -2.38 -0.01 2.69 16 47 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.05 2.78 6.24 -2.39 -0.01 2.76 16 49 H -0.01 -0.81 7.83 -2.38 -0.02 -0.83 16 50 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 51 H 0.07 1.58 7.66 -2.39 -0.02 1.56 16 52 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 53 H 0.06 1.44 7.66 -2.39 -0.02 1.42 16 54 H 0.15 4.32 6.30 -2.91 -0.02 4.30 16 Total: -1.00 -73.31 388.49 2.63 -70.68 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.27 Total: 35.18 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 5.32 Total: -18.42 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -1.41 Total: -88.48 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -3.58 Total: -46.81 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.31 2.63 -70.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026771641.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.510 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds