Wall clock time and date at job start Tue Mar 31 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35596 * 124.73334 * 2 1 4 4 C 1.37839 * 109.47896 * 179.97438 * 3 2 1 5 5 C 1.46140 * 126.86299 * 179.97438 * 4 3 2 6 6 C 1.36271 * 120.00534 * 0.02562 * 5 4 3 7 7 O 1.35411 * 125.74519 * 0.02759 * 6 5 4 8 8 C 1.35035 * 111.43481 * 179.97438 * 7 6 5 9 9 C 1.38791 * 132.13697 * 179.97438 * 8 7 6 10 10 C 1.38687 * 119.89687 * 179.97438 * 9 8 7 11 11 O 1.35601 * 119.73541 * 179.97438 * 10 9 8 12 12 C 1.34798 * 117.00134 * 354.47584 * 11 10 9 13 13 H 1.08005 * 119.99771 * 5.05175 * 12 11 10 14 14 C 1.38710 * 120.00357 * 185.06163 * 12 11 10 15 15 N 1.31511 * 119.99876 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00141 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46880 * 89.99853 * 16 14 12 18 18 H 1.48500 * 109.47049 * 209.99556 * 16 14 12 19 19 H 1.48494 * 109.47130 * 329.99997 * 16 14 12 20 20 C 1.39391 * 120.52905 * 0.03736 * 10 9 8 21 21 C 1.36568 * 120.21338 * 359.97438 * 20 10 9 22 22 C 1.39540 * 119.87612 * 359.97438 * 21 20 10 23 23 C 1.42000 * 125.74944 * 179.71599 * 6 5 4 24 24 O 1.22011 * 127.40001 * 359.97438 * 23 6 5 25 25 C 1.47570 * 106.26645 * 0.22597 * 4 3 2 26 26 C 1.39243 * 133.87138 * 180.46973 * 25 4 3 27 27 C 1.37788 * 119.68397 * 179.62786 * 26 25 4 28 28 C 1.38734 * 120.27799 * 359.73283 * 27 26 25 29 29 C 1.37770 * 120.63186 * 359.97438 * 28 27 26 30 30 C 1.38014 * 124.72333 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47165 * 90.02186 * 1 2 3 32 32 H 1.09008 * 109.47339 * 210.02656 * 1 2 3 33 33 H 1.09004 * 109.47260 * 330.02454 * 1 2 3 34 34 H 1.08003 * 125.25336 * 359.96071 * 3 2 1 35 35 H 1.08004 * 119.99586 * 180.02562 * 5 4 3 36 36 H 1.07996 * 120.05016 * 0.02562 * 9 8 7 37 37 H 0.97006 * 119.99997 * 180.02562 * 15 14 12 38 38 H 1.08000 * 119.89191 * 179.97438 * 20 10 9 39 39 H 1.07998 * 120.06067 * 180.02562 * 21 20 10 40 40 H 1.07997 * 120.15773 * 359.35875 * 26 25 4 41 41 H 1.08000 * 119.85843 * 179.70699 * 27 26 25 42 42 H 1.08003 * 119.67985 * 179.97438 * 28 27 26 43 43 H 1.08003 * 120.02366 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2376 1.1143 0.0000 4 6 3.5674 0.7517 0.0006 5 6 4.7208 1.6491 0.0003 6 6 4.5341 2.9989 -0.0002 7 8 3.3370 3.6319 0.0002 8 6 3.4883 4.9737 0.0001 9 6 2.5699 6.0143 -0.0001 10 6 3.0139 7.3282 0.0004 11 8 2.1138 8.3423 -0.0003 12 6 0.8136 8.0065 -0.1171 13 1 0.5229 6.9663 -0.1225 14 6 -0.1511 8.9967 -0.2306 15 7 0.2028 10.2633 -0.2237 16 14 -1.9529 8.5313 -0.3932 17 1 -2.5637 8.4376 0.9572 18 1 -2.6621 9.5671 -1.1865 19 1 -2.0651 7.2192 -1.0794 20 6 4.3781 7.6146 0.0004 21 6 5.2931 6.6008 0.0003 22 6 4.8607 5.2741 0.0009 23 6 5.5619 3.9786 0.0052 24 8 6.7671 3.7883 0.0114 25 6 3.5934 -0.7238 -0.0046 26 6 4.6141 -1.6709 0.0017 27 6 4.3000 -3.0125 0.0015 28 6 2.9740 -3.4205 0.0006 29 6 1.9545 -2.4939 0.0005 30 6 2.2511 -1.1344 0.0005 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 1.8679 2.1292 -0.0006 35 1 5.7213 1.2423 0.0004 36 1 1.5112 5.8012 0.0002 37 1 -0.4719 10.9559 -0.3026 38 1 4.7125 8.6415 0.0004 39 1 6.3495 6.8255 0.0007 40 1 5.6470 -1.3555 0.0023 41 1 5.0894 -3.7496 0.0016 42 1 2.7388 -4.4746 0.0001 43 1 0.9256 -2.8224 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028182772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:01 Heat of formation + Delta-G solvation = 32.822988 kcal Electronic energy + Delta-G solvation = -30049.196990 eV Core-core repulsion = 25799.585883 eV Total energy + Delta-G solvation = -4249.611108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.90510 -41.39764 -38.93139 -37.68741 -37.29046 -36.06142 -34.15649 -32.61984 -31.44497 -30.52165 -29.89905 -29.70338 -28.76002 -26.87544 -25.82368 -24.28574 -23.00740 -22.46292 -21.71332 -21.27320 -20.24275 -19.54402 -18.20388 -17.68968 -17.18249 -16.75119 -16.28676 -15.96155 -15.75154 -15.60208 -15.53254 -14.90683 -14.48296 -14.38597 -14.19009 -14.08897 -13.90189 -13.69054 -13.32013 -13.24996 -13.21143 -13.08887 -12.87827 -12.57157 -12.53880 -12.10417 -11.92796 -11.76148 -11.65508 -11.41495 -11.12271 -11.00125 -10.94413 -10.65032 -10.33078 -9.82794 -9.28950 -9.17719 -9.09875 -8.43499 -8.17210 -7.58039 -7.23187 -6.79388 -4.34696 0.31791 1.00120 1.40707 1.83362 2.10077 2.49856 2.73687 2.95173 2.96849 3.01762 3.11389 3.45915 3.71081 3.76389 4.24218 4.32392 4.40961 4.41257 4.73260 4.78160 4.79431 4.85637 4.90072 4.92333 5.06580 5.15006 5.20924 5.22911 5.40761 5.41899 5.45922 5.58372 5.67694 5.76287 5.83121 6.04452 6.10757 6.16967 6.30895 6.37339 6.46326 6.51461 6.56000 6.69133 6.84852 6.95070 6.97985 7.01439 7.09392 7.20517 7.61224 7.66523 7.89672 8.64301 9.27372 10.36140 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.002595 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.568744 B =10787.454063 C =13393.627182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.475 5.475 3 C 0.107 3.893 4 C -0.173 4.173 5 C 0.014 3.986 6 C -0.053 4.053 7 O -0.227 6.227 8 C 0.179 3.821 9 C -0.257 4.257 10 C 0.202 3.798 11 O -0.146 6.146 12 C -0.394 4.394 13 H 0.101 0.899 14 C 0.044 3.956 15 N -0.843 5.843 16 Si 0.947 3.053 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.264 1.264 20 C -0.215 4.215 21 C 0.026 3.974 22 C -0.361 4.361 23 C 0.415 3.585 24 O -0.467 6.467 25 C -0.081 4.081 26 C -0.074 4.074 27 C -0.142 4.142 28 C -0.106 4.106 29 C -0.124 4.124 30 C 0.085 3.915 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.188 0.812 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.277 0.723 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -21.794 0.301 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.156 5.156 3 C -0.023 4.023 4 C -0.180 4.180 5 C -0.006 4.006 6 C -0.098 4.098 7 O -0.136 6.136 8 C 0.134 3.866 9 C -0.277 4.277 10 C 0.144 3.856 11 O -0.046 6.046 12 C -0.469 4.469 13 H 0.118 0.882 14 C -0.163 4.163 15 N -0.475 5.475 16 Si 0.770 3.230 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.188 1.188 20 C -0.235 4.235 21 C 0.007 3.993 22 C -0.364 4.364 23 C 0.301 3.699 24 O -0.350 6.350 25 C -0.085 4.085 26 C -0.093 4.093 27 C -0.161 4.161 28 C -0.125 4.125 29 C -0.144 4.144 30 C -0.019 4.019 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.204 0.796 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.058 -21.464 0.303 21.466 hybrid contribution -1.128 -0.109 -0.077 1.136 sum -1.186 -21.573 0.226 21.607 Atomic orbital electron populations 1.22076 0.76579 1.04680 1.03547 1.43699 1.06472 1.04442 1.60943 1.23001 0.89923 0.91485 0.97897 1.19081 0.91676 0.90687 1.16520 1.20922 0.97721 0.87141 0.94816 1.20620 0.85263 0.93407 1.10484 1.84196 1.29151 1.16982 1.83291 1.19202 0.93908 0.81243 0.92243 1.19810 0.99248 0.88989 1.19642 1.19067 0.89998 0.86615 0.89949 1.83961 1.16671 1.29766 1.74157 1.21560 0.78474 0.94899 1.51988 0.88178 1.25450 1.00744 0.94494 0.95660 1.70011 1.35482 0.99493 1.42485 0.85615 0.79441 0.78914 0.79009 1.19475 1.19884 1.18830 1.19923 0.89863 0.99734 1.13934 1.19841 0.98821 0.89356 0.91241 1.20479 0.94198 0.95465 1.26287 1.19097 0.88270 0.88429 0.74062 1.90669 1.15272 1.87026 1.42021 1.19012 0.92307 0.92288 1.04853 1.20503 0.98193 0.91835 0.98751 1.20913 0.96358 0.95370 1.03462 1.20770 0.92331 0.98742 1.00626 1.20024 0.99591 0.89039 1.05772 1.18277 0.89988 0.88190 1.05397 0.90747 0.89881 0.89228 0.79567 0.82472 0.84251 0.91284 0.85210 0.85770 0.85702 0.85862 0.85790 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 10.98 59.85 0.66 1.16 16 2 N -0.47 -5.19 3.15 -121.11 -0.38 -5.57 16 3 C 0.11 1.36 10.51 -16.03 -0.17 1.19 16 4 C -0.17 -2.35 6.27 -103.07 -0.65 -2.99 16 5 C 0.01 0.20 10.08 -37.12 -0.37 -0.18 16 6 C -0.05 -0.88 6.76 -38.85 -0.26 -1.15 16 7 O -0.23 -3.97 7.80 0.49 0.00 -3.96 16 8 C 0.18 3.50 7.32 -38.53 -0.28 3.22 16 9 C -0.26 -5.34 9.18 -39.21 -0.36 -5.70 16 10 C 0.20 4.54 6.65 -38.99 -0.26 4.28 16 11 O -0.15 -3.79 9.74 0.60 0.01 -3.79 16 12 C -0.39 -9.98 9.48 30.91 0.29 -9.68 16 13 H 0.10 2.31 5.17 -52.48 -0.27 2.04 16 14 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 15 N -0.84 -22.60 13.67 55.48 0.76 -21.84 16 16 Si 0.95 18.54 29.55 -169.99 -5.02 13.52 16 17 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 20 C -0.22 -4.30 9.93 -39.76 -0.39 -4.69 16 21 C 0.03 0.49 10.04 -39.70 -0.40 0.09 16 22 C -0.36 -7.10 6.37 -104.88 -0.67 -7.77 16 23 C 0.41 7.82 7.55 -34.46 -0.26 7.56 16 24 O -0.47 -9.37 18.02 4.91 0.09 -9.28 16 25 C -0.08 -1.01 6.35 -104.92 -0.67 -1.68 16 26 C -0.07 -0.79 10.09 -39.37 -0.40 -1.18 16 27 C -0.14 -1.27 10.03 -39.56 -0.40 -1.66 16 28 C -0.11 -0.89 10.01 -39.57 -0.40 -1.29 16 29 C -0.12 -1.16 9.89 -39.41 -0.39 -1.55 16 30 C 0.09 0.99 6.78 -83.94 -0.57 0.42 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.44 7.98 -51.92 -0.41 0.02 16 33 H 0.09 0.54 8.13 -51.93 -0.42 0.12 16 34 H 0.19 2.35 6.06 -52.48 -0.32 2.04 16 35 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.14 2.80 5.60 -52.49 -0.29 2.51 16 37 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 39 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.83 7.98 -52.48 -0.42 0.41 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -30.84 378.72 -9.11 -39.95 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.23 Total: 5.86 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -6.04 Total: -20.59 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: 0.38 Total: -27.41 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.10 Total: -17.03 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.84 -9.11 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028182772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.776 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds