Wall clock time and date at job start Tue Mar 31 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86796 * 119.99898 * 2 1 4 4 H 1.48493 * 109.47162 * 275.24347 * 3 2 1 5 5 H 1.48506 * 109.47001 * 35.24109 * 3 2 1 6 6 H 1.48497 * 109.47173 * 155.23879 * 3 2 1 7 7 C 1.39071 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00397 * 340.65463 * 7 2 1 9 9 N 1.37110 * 119.99524 * 160.65425 * 7 2 1 10 10 C 1.36243 * 119.71496 * 134.79076 * 9 7 2 11 11 C 1.50701 * 118.34579 * 359.95570 * 10 9 7 12 12 N 1.46895 * 109.46637 * 180.02562 * 11 10 9 13 13 C 1.47163 * 111.00120 * 170.96325 * 12 11 10 14 14 C 1.52903 * 108.50547 * 52.15187 * 13 12 11 15 15 C 1.50717 * 109.95256 * 50.39576 * 14 13 12 16 16 C 1.38688 * 118.48124 * 163.47912 * 15 14 13 17 17 C 1.38041 * 120.34321 * 180.02562 * 16 15 14 18 18 C 1.38261 * 119.82848 * 359.49821 * 17 16 15 19 19 C 1.38015 * 119.86866 * 0.32912 * 18 17 16 20 20 C 1.37829 * 121.66462 * 343.09256 * 15 14 13 21 21 C 1.46634 * 111.00101 * 293.94674 * 12 11 10 22 22 N 1.29825 * 123.29781 * 180.23560 * 10 9 7 23 23 C 1.35629 * 121.62695 * 359.47848 * 22 10 9 24 24 C 1.39634 * 121.61599 * 180.23443 * 23 22 10 25 25 C 1.37709 * 119.69065 * 180.27222 * 24 23 22 26 26 C 1.38872 * 120.83163 * 359.97438 * 25 24 23 27 27 C 1.37799 * 120.56541 * 0.02562 * 26 25 24 28 28 C 1.39364 * 119.52006 * 359.97438 * 27 26 25 29 29 C 1.35339 * 119.72007 * 314.77039 * 9 7 2 30 30 O 1.21722 * 121.28375 * 0.02562 * 29 9 7 31 31 H 0.97000 * 120.00051 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47098 * 59.99921 * 11 10 9 33 33 H 1.08995 * 109.47056 * 299.99902 * 11 10 9 34 34 H 1.08998 * 109.63813 * 171.85908 * 13 12 11 35 35 H 1.09004 * 109.62973 * 292.44989 * 13 12 11 36 36 H 1.08999 * 109.38744 * 170.54339 * 14 13 12 37 37 H 1.08997 * 109.38917 * 290.34715 * 14 13 12 38 38 H 1.07991 * 119.82837 * 359.74788 * 16 15 14 39 39 H 1.07997 * 120.08187 * 179.78043 * 17 16 15 40 40 H 1.07994 * 120.06563 * 180.34617 * 18 17 16 41 41 H 1.08002 * 119.81014 * 179.97438 * 19 18 17 42 42 H 1.09000 * 109.30465 * 168.78914 * 21 12 11 43 43 H 1.09008 * 109.12939 * 49.31851 * 21 12 11 44 44 H 1.08003 * 120.15013 * 0.26956 * 24 23 22 45 45 H 1.08001 * 119.58488 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.71798 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.23315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3833 2.1104 -1.3941 5 1 1.5037 2.6181 0.8079 6 1 3.5951 1.4108 0.5864 7 6 2.0079 -1.2044 0.0005 8 1 1.5137 -2.1132 0.3107 9 7 3.3209 -1.2381 -0.3928 10 6 4.2290 -1.9370 0.3441 11 6 3.7481 -2.6541 1.5793 12 7 4.8793 -3.3384 2.2197 13 6 4.4969 -3.8691 3.5379 14 6 3.2293 -4.7084 3.3741 15 6 3.4102 -5.6999 2.2535 16 6 2.5324 -6.7704 2.1694 17 6 2.6632 -7.7017 1.1589 18 6 3.6681 -7.5609 0.2197 19 6 4.5399 -6.4941 0.3005 20 6 4.4134 -5.5602 1.3187 21 6 5.3919 -4.4163 1.3680 22 7 5.4886 -2.0120 0.0387 23 6 5.9917 -1.3966 -1.0603 24 6 7.3456 -1.4814 -1.3912 25 6 7.8152 -0.8360 -2.5135 26 6 6.9586 -0.1010 -3.3225 27 6 5.6186 -0.0024 -3.0170 28 6 5.1229 -0.6479 -1.8857 29 6 3.7038 -0.5771 -1.5100 30 8 2.9037 0.0514 -2.1781 31 1 -0.4850 0.8400 -0.0004 32 1 2.9897 -3.3863 1.3023 33 1 3.3196 -1.9325 2.2747 34 1 5.3008 -4.4927 3.9291 35 1 4.3035 -3.0436 4.2230 36 1 3.0273 -5.2436 4.3018 37 1 2.3890 -4.0535 3.1437 38 1 1.7453 -6.8783 2.9008 39 1 1.9795 -8.5355 1.0995 40 1 3.7704 -8.2842 -0.5757 41 1 5.3247 -6.3853 -0.4334 42 1 6.3414 -4.7714 1.7685 43 1 5.5476 -4.0317 0.3599 44 1 8.0214 -2.0504 -0.7699 45 1 8.8628 -0.9024 -2.7676 46 1 7.3461 0.3976 -4.1987 47 1 4.9573 0.5711 -3.6497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029032018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:18 Heat of formation + Delta-G solvation = 68.367455 kcal Electronic energy + Delta-G solvation = -32999.969483 eV Core-core repulsion = 28920.025544 eV Total energy + Delta-G solvation = -4079.943939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.00927 -40.15456 -37.89509 -37.44112 -36.25273 -33.94361 -32.63188 -32.24900 -31.33482 -30.65270 -29.78957 -28.73972 -27.22480 -25.89475 -24.19023 -23.34136 -22.77450 -22.10058 -21.87829 -21.14341 -19.09760 -18.87901 -18.01980 -17.25685 -16.44960 -16.08678 -15.69343 -15.28220 -15.20753 -15.13818 -14.65747 -14.40201 -14.20237 -14.06421 -13.93695 -13.57169 -13.48960 -13.15016 -12.94636 -12.92744 -12.76813 -12.53495 -12.30172 -12.18549 -11.89306 -11.55597 -11.46652 -11.37257 -11.31689 -11.18356 -11.04425 -10.84503 -10.63760 -10.48690 -10.31482 -9.43551 -9.11949 -9.00045 -8.80836 -8.65532 -8.54716 -8.41963 -8.05073 -7.26756 -6.77499 -4.62332 1.26268 1.40198 1.44756 1.47061 2.92111 3.08775 3.19500 3.30124 3.56391 3.63582 3.83498 4.09293 4.29695 4.53885 4.64834 4.76990 4.88568 4.92542 5.00357 5.08928 5.13817 5.18335 5.24757 5.29003 5.37217 5.51542 5.54300 5.60349 5.66082 5.71505 5.76735 5.88779 5.92120 5.98373 6.00635 6.04575 6.09850 6.19243 6.24524 6.32965 6.47107 6.54593 6.58753 6.61693 6.73836 6.84843 6.87557 7.11098 7.13970 7.26898 7.31147 7.37502 7.42902 7.90944 8.24740 8.62751 8.91712 9.07756 10.23924 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.004559 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.259471 B = 6140.344606 C = 7812.177540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.109 3.891 3 Si 0.890 3.110 4 H -0.249 1.249 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.381 4.381 8 H 0.118 0.882 9 N -0.370 5.370 10 C 0.373 3.627 11 C 0.117 3.883 12 N -0.504 5.504 13 C 0.054 3.946 14 C -0.124 4.124 15 C -0.079 4.079 16 C -0.118 4.118 17 C -0.126 4.126 18 C -0.124 4.124 19 C -0.114 4.114 20 C -0.107 4.107 21 C 0.087 3.913 22 N -0.537 5.537 23 C 0.168 3.832 24 C -0.127 4.127 25 C -0.086 4.086 26 C -0.171 4.171 27 C -0.040 4.040 28 C -0.215 4.215 29 C 0.497 3.503 30 O -0.512 6.512 31 H 0.285 0.715 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.922 -10.021 4.528 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.107 4.107 3 Si 0.716 3.284 4 H -0.174 1.174 5 H -0.214 1.214 6 H -0.195 1.195 7 C -0.507 4.507 8 H 0.135 0.865 9 N -0.075 5.075 10 C 0.110 3.890 11 C -0.013 4.013 12 N -0.224 5.224 13 C -0.075 4.075 14 C -0.162 4.162 15 C -0.079 4.079 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.142 4.142 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.041 4.041 22 N -0.264 5.264 23 C 0.053 3.947 24 C -0.146 4.146 25 C -0.105 4.105 26 C -0.190 4.190 27 C -0.059 4.059 28 C -0.222 4.222 29 C 0.293 3.707 30 O -0.389 6.389 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.102 0.898 43 H 0.130 0.870 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.126 -9.517 4.564 14.627 hybrid contribution -1.124 0.522 -0.809 1.480 sum 9.002 -8.994 3.755 13.268 Atomic orbital electron populations 1.69644 1.06850 1.29613 1.39018 1.25256 0.95033 0.99570 0.90870 0.86601 0.79956 0.82088 0.79712 1.17352 1.21373 1.19451 1.19223 0.83277 0.97811 1.50423 0.86461 1.42458 1.09816 1.37323 1.17912 1.22857 0.84531 0.90889 0.90711 1.20888 0.91541 0.97160 0.91662 1.62347 1.31883 1.25754 1.02461 1.22264 0.95533 0.97834 0.91831 1.21210 1.00807 0.97409 0.96780 1.19573 0.95582 0.96199 0.96577 1.21068 0.98914 0.94718 0.98913 1.21025 0.98574 0.99327 0.95507 1.21050 0.95894 0.98293 0.98982 1.21082 0.99559 0.94606 0.98020 1.20653 0.97544 0.97962 0.94724 1.21385 0.95071 0.86619 1.01022 1.68502 1.10013 1.29190 1.18697 1.18886 0.93759 0.91955 0.90137 1.20643 0.93235 1.02595 0.98164 1.21043 0.99178 0.96058 0.94258 1.20891 0.93325 1.03405 1.01343 1.20930 0.95232 0.95344 0.94424 1.20762 0.93685 1.06776 1.00987 1.18644 0.88310 0.82840 0.80868 1.90708 1.54740 1.41703 1.51770 0.90483 0.91318 0.87361 0.90357 0.89845 0.90383 0.89758 0.86396 0.86459 0.86440 0.86216 0.89753 0.86956 0.85291 0.86171 0.86293 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.63 13.95 55.50 0.77 -21.85 16 2 C 0.11 2.96 4.86 -17.49 -0.08 2.87 16 3 Si 0.89 22.53 25.00 -169.99 -4.25 18.29 16 4 H -0.25 -6.65 6.46 56.52 0.36 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.38 -9.95 8.54 -14.88 -0.13 -10.07 16 8 H 0.12 3.08 7.37 -52.49 -0.39 2.69 16 9 N -0.37 -9.07 2.26 -59.56 -0.13 -9.20 16 10 C 0.37 7.88 7.12 -154.87 -1.10 6.78 16 11 C 0.12 2.06 3.11 -4.98 -0.02 2.05 16 12 N -0.50 -7.53 4.68 -237.64 -1.11 -8.64 16 13 C 0.05 0.64 6.03 -3.73 -0.02 0.61 16 14 C -0.12 -1.46 5.17 -27.92 -0.14 -1.60 16 15 C -0.08 -1.06 5.05 -104.60 -0.53 -1.59 16 16 C -0.12 -1.49 9.66 -39.49 -0.38 -1.87 16 17 C -0.13 -1.53 10.05 -39.65 -0.40 -1.93 16 18 C -0.12 -1.54 10.05 -39.65 -0.40 -1.94 16 19 C -0.11 -1.53 9.65 -39.48 -0.38 -1.91 16 20 C -0.11 -1.51 5.21 -104.63 -0.54 -2.06 16 21 C 0.09 1.26 5.11 -5.16 -0.03 1.23 16 22 N -0.54 -10.73 7.17 -8.10 -0.06 -10.79 16 23 C 0.17 3.37 6.63 -84.50 -0.56 2.81 16 24 C -0.13 -2.06 10.03 -39.25 -0.39 -2.45 16 25 C -0.09 -1.22 10.00 -39.54 -0.40 -1.62 16 26 C -0.17 -2.62 10.02 -39.51 -0.40 -3.02 16 27 C -0.04 -0.76 9.68 -39.32 -0.38 -1.14 16 28 C -0.21 -4.74 5.89 -104.78 -0.62 -5.36 16 29 C 0.50 12.66 5.85 -12.47 -0.07 12.59 16 30 O -0.51 -14.33 12.75 5.17 0.07 -14.27 16 31 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.26 5.36 -51.93 -0.28 0.98 16 33 H 0.11 1.91 7.99 -51.93 -0.42 1.49 16 34 H 0.08 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 1.08 7.04 -51.93 -0.37 0.71 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.11 1.85 5.55 -51.92 -0.29 1.56 16 44 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 45 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 47 H 0.13 2.37 7.83 -52.49 -0.41 1.96 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -30.75 372.50 -12.03 -42.78 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.96 Total: 5.71 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -6.97 Total: -7.63 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: -0.53 Total: -50.49 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.07 Total: -14.27 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.25 Total: 18.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.75 -12.03 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029032018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.149 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds