Wall clock time and date at job start Tue Mar 31 2020 05:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31262 * 1 3 3 Si 1.86796 * 119.99898 * 2 1 4 4 H 1.48493 * 109.47162 * 275.24347 * 3 2 1 5 5 H 1.48506 * 109.47001 * 35.24109 * 3 2 1 6 6 H 1.48497 * 109.47173 * 155.23879 * 3 2 1 7 7 C 1.39071 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00397 * 340.65463 * 7 2 1 9 9 N 1.37110 * 119.99524 * 160.65425 * 7 2 1 10 10 C 1.36243 * 119.71496 * 134.79076 * 9 7 2 11 11 C 1.50701 * 118.34579 * 359.95570 * 10 9 7 12 12 N 1.46895 * 109.46637 * 180.02562 * 11 10 9 13 13 C 1.47163 * 111.00120 * 170.96325 * 12 11 10 14 14 C 1.52903 * 108.50547 * 52.15187 * 13 12 11 15 15 C 1.50717 * 109.95256 * 50.39576 * 14 13 12 16 16 C 1.38688 * 118.48124 * 163.47912 * 15 14 13 17 17 C 1.38041 * 120.34321 * 180.02562 * 16 15 14 18 18 C 1.38261 * 119.82848 * 359.49821 * 17 16 15 19 19 C 1.38015 * 119.86866 * 0.32912 * 18 17 16 20 20 C 1.37829 * 121.66462 * 343.09256 * 15 14 13 21 21 C 1.46634 * 111.00101 * 293.94674 * 12 11 10 22 22 N 1.29825 * 123.29781 * 180.23560 * 10 9 7 23 23 C 1.35629 * 121.62695 * 359.47848 * 22 10 9 24 24 C 1.39634 * 121.61599 * 180.23443 * 23 22 10 25 25 C 1.37709 * 119.69065 * 180.27222 * 24 23 22 26 26 C 1.38872 * 120.83163 * 359.97438 * 25 24 23 27 27 C 1.37799 * 120.56541 * 0.02562 * 26 25 24 28 28 C 1.39364 * 119.52006 * 359.97438 * 27 26 25 29 29 C 1.35339 * 119.72007 * 314.77039 * 9 7 2 30 30 O 1.21722 * 121.28375 * 0.02562 * 29 9 7 31 31 H 0.97000 * 120.00051 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47098 * 59.99921 * 11 10 9 33 33 H 1.08995 * 109.47056 * 299.99902 * 11 10 9 34 34 H 1.08998 * 109.63813 * 171.85908 * 13 12 11 35 35 H 1.09004 * 109.62973 * 292.44989 * 13 12 11 36 36 H 1.08999 * 109.38744 * 170.54339 * 14 13 12 37 37 H 1.08997 * 109.38917 * 290.34715 * 14 13 12 38 38 H 1.07991 * 119.82837 * 359.74788 * 16 15 14 39 39 H 1.07997 * 120.08187 * 179.78043 * 17 16 15 40 40 H 1.07994 * 120.06563 * 180.34617 * 18 17 16 41 41 H 1.08002 * 119.81014 * 179.97438 * 19 18 17 42 42 H 1.09000 * 109.30465 * 168.78914 * 21 12 11 43 43 H 1.09008 * 109.12939 * 49.31851 * 21 12 11 44 44 H 1.08003 * 120.15013 * 0.26956 * 24 23 22 45 45 H 1.08001 * 119.58488 * 179.97438 * 25 24 23 46 46 H 1.07999 * 119.71798 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.23315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3833 2.1104 -1.3941 5 1 1.5037 2.6181 0.8079 6 1 3.5951 1.4108 0.5864 7 6 2.0079 -1.2044 0.0005 8 1 1.5137 -2.1132 0.3107 9 7 3.3209 -1.2381 -0.3928 10 6 4.2290 -1.9370 0.3441 11 6 3.7481 -2.6541 1.5793 12 7 4.8793 -3.3384 2.2197 13 6 4.4969 -3.8691 3.5379 14 6 3.2293 -4.7084 3.3741 15 6 3.4102 -5.6999 2.2535 16 6 2.5324 -6.7704 2.1694 17 6 2.6632 -7.7017 1.1589 18 6 3.6681 -7.5609 0.2197 19 6 4.5399 -6.4941 0.3005 20 6 4.4134 -5.5602 1.3187 21 6 5.3919 -4.4163 1.3680 22 7 5.4886 -2.0120 0.0387 23 6 5.9917 -1.3966 -1.0603 24 6 7.3456 -1.4814 -1.3912 25 6 7.8152 -0.8360 -2.5135 26 6 6.9586 -0.1010 -3.3225 27 6 5.6186 -0.0024 -3.0170 28 6 5.1229 -0.6479 -1.8857 29 6 3.7038 -0.5771 -1.5100 30 8 2.9037 0.0514 -2.1781 31 1 -0.4850 0.8400 -0.0004 32 1 2.9897 -3.3863 1.3023 33 1 3.3196 -1.9325 2.2747 34 1 5.3008 -4.4927 3.9291 35 1 4.3035 -3.0436 4.2230 36 1 3.0273 -5.2436 4.3018 37 1 2.3890 -4.0535 3.1437 38 1 1.7453 -6.8783 2.9008 39 1 1.9795 -8.5355 1.0995 40 1 3.7704 -8.2842 -0.5757 41 1 5.3247 -6.3853 -0.4334 42 1 6.3414 -4.7714 1.7685 43 1 5.5476 -4.0317 0.3599 44 1 8.0214 -2.0504 -0.7699 45 1 8.8628 -0.9024 -2.7676 46 1 7.3461 0.3976 -4.1987 47 1 4.9573 0.5711 -3.6497 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029032018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:17 Heat of formation + Delta-G solvation = 51.340849 kcal Electronic energy + Delta-G solvation = -33000.707812 eV Core-core repulsion = 28920.025544 eV Total energy + Delta-G solvation = -4080.682268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.64211 -41.27533 -39.42836 -38.84500 -37.68117 -35.71028 -34.14697 -33.64725 -32.51002 -32.10346 -31.06354 -29.83029 -28.57210 -27.74082 -25.37580 -24.78864 -24.11243 -23.25768 -23.01657 -22.64904 -20.69951 -20.23414 -19.65003 -18.80052 -17.92616 -17.43408 -17.03741 -16.76264 -16.54720 -16.38542 -16.10618 -15.80766 -15.57974 -15.37213 -15.26671 -15.06781 -14.92084 -14.67192 -14.60689 -14.31001 -13.98813 -13.86406 -13.71889 -13.40805 -13.13621 -13.00687 -12.88852 -12.74266 -12.56422 -12.44849 -12.36038 -12.31684 -12.18995 -11.91582 -11.51296 -11.26880 -11.01041 -10.70358 -10.62024 -10.00784 -9.64587 -9.43693 -9.22447 -8.90246 -8.76311 -6.66205 -0.26250 -0.08842 0.46225 0.48280 1.04472 1.14296 1.23277 1.32175 1.90549 1.96918 2.13288 2.65952 2.85039 3.03763 3.10005 3.20293 3.58830 3.79795 3.86249 3.90976 4.00135 4.07525 4.16037 4.18612 4.24174 4.32929 4.39625 4.42897 4.49801 4.55353 4.59464 4.70021 4.72437 4.80782 4.88440 5.01710 5.03682 5.06889 5.14130 5.15393 5.21610 5.28603 5.30482 5.48622 5.49828 5.55360 5.57557 5.62108 5.71903 5.89469 6.06029 6.08042 6.15259 6.23478 6.32147 6.67781 7.15963 7.24370 8.25054 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.009076 B = 0.004559 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.259471 B = 6140.344606 C = 7812.177540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.266 1.266 6 H -0.278 1.278 7 C -0.384 4.384 8 H 0.104 0.896 9 N -0.388 5.388 10 C 0.365 3.635 11 C 0.129 3.871 12 N -0.508 5.508 13 C 0.054 3.946 14 C -0.119 4.119 15 C -0.093 4.093 16 C -0.129 4.129 17 C -0.131 4.131 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.125 4.125 21 C 0.094 3.906 22 N -0.514 5.514 23 C 0.138 3.862 24 C -0.117 4.117 25 C -0.065 4.065 26 C -0.141 4.141 27 C -0.069 4.069 28 C -0.240 4.240 29 C 0.477 3.523 30 O -0.559 6.559 31 H 0.288 0.712 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.158 0.842 45 H 0.176 0.824 46 H 0.162 0.838 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.950 -11.251 4.789 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.132 4.132 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.203 1.203 7 C -0.510 4.510 8 H 0.121 0.879 9 N -0.095 5.095 10 C 0.101 3.899 11 C -0.001 4.001 12 N -0.229 5.229 13 C -0.073 4.073 14 C -0.158 4.158 15 C -0.093 4.093 16 C -0.147 4.147 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.127 4.127 21 C -0.034 4.034 22 N -0.239 5.239 23 C 0.024 3.976 24 C -0.137 4.137 25 C -0.084 4.084 26 C -0.160 4.160 27 C -0.089 4.089 28 C -0.246 4.246 29 C 0.275 3.725 30 O -0.441 6.441 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.122 0.878 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.176 0.824 45 H 0.194 0.806 46 H 0.179 0.821 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.221 -10.771 4.858 18.489 hybrid contribution -1.991 0.775 -1.044 2.378 sum 12.230 -9.996 3.814 16.249 Atomic orbital electron populations 1.69674 1.07361 1.30087 1.41908 1.25642 0.95397 1.01093 0.91108 0.86014 0.79141 0.81124 0.78068 1.20298 1.19146 1.20296 1.19054 0.84455 0.97069 1.50436 0.87887 1.42477 1.09736 1.38663 1.18635 1.23476 0.84774 0.89997 0.91664 1.20739 0.92193 0.96737 0.90392 1.62371 1.30558 1.26421 1.03501 1.22388 0.96220 0.98468 0.90221 1.21187 1.00120 0.97043 0.97402 1.19822 0.95642 0.96845 0.97018 1.21376 0.99172 0.94593 0.99587 1.21383 0.98692 0.99825 0.95011 1.21360 0.95620 0.98390 0.99607 1.21294 1.00287 0.95065 0.98190 1.20714 0.98187 0.98222 0.95557 1.21257 0.95904 0.86470 0.99756 1.68610 1.09212 1.27639 1.18417 1.19393 0.95413 0.92639 0.90164 1.21091 0.91496 1.02096 0.98976 1.21677 1.01541 0.93081 0.92138 1.21439 0.91333 1.01285 1.01897 1.21089 0.97288 0.96377 0.94120 1.20897 0.92160 1.08703 1.02841 1.19318 0.89806 0.82570 0.80794 1.90647 1.56134 1.44042 1.53283 0.90144 0.92409 0.87774 0.88505 0.88774 0.87949 0.91273 0.84710 0.84148 0.84401 0.85599 0.88130 0.89275 0.82425 0.80636 0.82080 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.77 13.95 21.68 0.30 -49.47 16 2 C 0.08 4.57 4.86 84.98 0.41 4.98 16 3 Si 0.93 48.83 25.00 68.60 1.71 50.54 16 4 H -0.28 -15.65 6.46 99.48 0.64 -15.00 16 5 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -14.64 7.11 99.48 0.71 -13.93 16 7 C -0.38 -21.28 8.54 84.07 0.72 -20.56 16 8 H 0.10 5.82 7.37 -2.91 -0.02 5.80 16 9 N -0.39 -19.99 2.26 -460.24 -1.04 -21.03 16 10 C 0.36 15.86 7.12 137.94 0.98 16.84 16 11 C 0.13 4.69 3.11 85.56 0.27 4.96 16 12 N -0.51 -14.83 4.68 -905.75 -4.24 -19.07 16 13 C 0.05 1.21 6.03 86.22 0.52 1.73 16 14 C -0.12 -2.70 5.17 29.82 0.15 -2.55 16 15 C -0.09 -2.44 5.05 -19.85 -0.10 -2.54 16 16 C -0.13 -3.12 9.66 22.33 0.22 -2.91 16 17 C -0.13 -2.99 10.05 22.23 0.22 -2.77 16 18 C -0.13 -3.11 10.05 22.22 0.22 -2.89 16 19 C -0.13 -3.41 9.65 22.34 0.22 -3.20 16 20 C -0.13 -3.48 5.21 -19.87 -0.10 -3.58 16 21 C 0.09 2.63 5.11 85.58 0.44 3.07 16 22 N -0.51 -20.36 7.17 -179.53 -1.29 -21.65 16 23 C 0.14 5.34 6.63 39.65 0.26 5.61 16 24 C -0.12 -3.32 10.03 22.48 0.23 -3.09 16 25 C -0.07 -1.47 10.00 22.30 0.22 -1.24 16 26 C -0.14 -3.70 10.02 22.32 0.22 -3.48 16 27 C -0.07 -2.58 9.68 22.44 0.22 -2.37 16 28 C -0.24 -10.69 5.89 -19.96 -0.12 -10.80 16 29 C 0.48 25.54 5.85 86.44 0.51 26.04 16 30 O -0.56 -33.41 12.75 -4.42 -0.06 -33.47 16 31 H 0.29 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.06 2.24 5.36 -2.39 -0.01 2.22 16 33 H 0.10 3.83 7.99 -2.39 -0.02 3.81 16 34 H 0.10 1.83 8.05 -2.39 -0.02 1.81 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.79 7.04 -2.39 -0.02 1.77 16 38 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.13 3.00 8.06 -2.91 -0.02 2.97 16 42 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.09 2.90 5.55 -2.38 -0.01 2.88 16 44 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 45 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 47 H 0.12 4.47 7.83 -2.91 -0.02 4.45 16 Total: -1.00 -73.00 372.50 2.04 -70.97 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.94 Total: 21.91 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.70 Total: 1.27 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -6.27 Total: -111.22 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -0.06 Total: -33.47 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.71 Total: 50.54 kcal Total: -73.00 2.04 -70.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029032018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.308 kcal (2) G-P(sol) polarization free energy of solvation -73.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds