Wall clock time and date at job start Tue Mar 31 2020 05:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00059 * 2 1 4 4 C 1.38732 * 120.05776 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94535 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.97601 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.05590 * 359.97438 * 5 4 3 8 8 S 1.76200 * 119.94555 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40115 * 14.83596 * 8 7 5 10 10 O 1.42094 * 106.40108 * 147.75739 * 8 7 5 11 11 N 1.65597 * 107.21575 * 261.29975 * 8 7 5 12 12 C 1.38857 * 120.00420 * 66.36018 * 11 8 7 13 13 C 1.39565 * 119.84080 * 312.62068 * 12 11 8 14 14 C 1.36349 * 120.15970 * 179.71827 * 13 12 11 15 15 C 1.40880 * 119.83569 * 0.54508 * 14 13 12 16 16 C 1.41132 * 120.15460 * 179.69963 * 15 14 13 17 17 H 1.07995 * 120.00492 * 324.70880 * 16 15 14 18 18 C 1.39870 * 119.99849 * 144.71254 * 16 15 14 19 19 N 1.30898 * 119.99851 * 354.10033 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 174.10176 * 18 16 15 21 21 H 1.48510 * 109.46849 * 59.99819 * 20 18 16 22 22 H 1.48494 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47276 * 300.00211 * 20 18 16 24 24 C 1.40888 * 119.68776 * 359.72703 * 15 14 13 25 25 C 1.36342 * 119.84200 * 359.97438 * 24 15 14 26 26 C 1.38262 * 120.10725 * 0.02562 * 7 5 4 27 27 C 1.50704 * 119.96930 * 179.97438 * 26 7 5 28 28 C 1.38143 * 120.06164 * 0.02562 * 26 7 5 29 29 H 1.09001 * 109.47160 * 60.00219 * 1 2 3 30 30 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47211 * 299.99523 * 1 2 3 32 32 H 1.08002 * 120.02602 * 0.29472 * 4 3 2 33 33 H 1.09007 * 109.46510 * 97.04166 * 6 5 4 34 34 H 1.08993 * 109.47475 * 217.04865 * 6 5 4 35 35 H 1.09005 * 109.46687 * 337.05182 * 6 5 4 36 36 H 0.97001 * 120.00015 * 246.35411 * 11 8 7 37 37 H 1.08001 * 119.92088 * 359.97119 * 13 12 11 38 38 H 1.07997 * 120.07823 * 180.27093 * 14 13 12 39 39 H 0.97004 * 119.99551 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.07791 * 179.97438 * 24 15 14 41 41 H 1.07995 * 119.92244 * 179.97438 * 25 24 15 42 42 H 1.08998 * 109.47013 * 84.20810 * 27 26 7 43 43 H 1.09002 * 109.47419 * 204.20949 * 27 26 7 44 44 H 1.08998 * 109.47283 * 324.21359 * 27 26 7 45 45 H 1.08002 * 120.03229 * 180.02562 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 5.5609 2.5981 -0.0012 7 6 3.3018 3.6759 0.0005 8 16 4.1017 5.2459 0.0019 9 8 5.4581 5.0054 -0.3468 10 8 3.2568 6.1272 -0.7250 11 7 4.1105 5.7901 1.5659 12 6 4.8559 5.1232 2.5290 13 6 4.7768 3.7334 2.6291 14 6 5.5103 3.0714 3.5687 15 6 6.3408 3.7948 4.4471 16 6 7.0981 3.1170 5.4263 17 1 6.6957 2.2377 5.9073 18 6 8.3699 3.5840 5.7739 19 7 8.9055 4.5782 5.1121 20 14 9.3042 2.7887 7.1825 21 1 9.5194 1.3500 6.8839 22 1 10.6177 3.4614 7.3476 23 1 8.5183 2.9219 8.4354 24 6 6.4113 5.1981 4.3439 25 6 5.6769 5.8464 3.3956 26 6 1.9210 3.6048 0.0011 27 6 1.1020 4.8698 0.0022 28 6 1.2914 2.3751 0.0016 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0208 0.3800 -0.0058 33 1 5.9160 2.7444 -1.0213 34 1 5.8801 3.4361 0.6184 35 1 5.9750 1.6723 0.3984 36 1 3.5949 6.5749 1.8092 37 1 4.1361 3.1805 1.9581 38 1 5.4514 1.9955 3.6421 39 1 9.7874 4.9023 5.3534 40 1 7.0456 5.7590 5.0144 41 1 5.7296 6.9221 3.3156 42 1 0.9912 5.2318 -1.0199 43 1 0.1179 4.6653 0.4239 44 1 1.6046 5.6275 0.6034 45 1 0.2128 2.3201 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029048204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:49 Heat of formation + Delta-G solvation = -55.665089 kcal Electronic energy + Delta-G solvation = -30985.781761 eV Core-core repulsion = 26867.777473 eV Total energy + Delta-G solvation = -4118.004288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.47576 -38.42071 -37.86004 -37.09145 -35.54285 -34.78898 -33.55496 -32.74427 -31.43644 -29.61434 -28.69957 -28.12890 -27.36847 -26.27808 -24.72995 -22.52858 -21.32322 -20.93982 -20.86224 -19.12290 -17.69126 -17.59485 -17.40407 -17.07942 -16.80198 -16.35475 -16.02005 -15.26684 -14.83965 -14.43594 -14.15383 -14.13107 -13.71351 -13.58107 -13.30258 -13.14776 -13.11975 -12.75336 -12.64818 -12.48299 -12.31426 -12.14645 -12.03598 -11.99661 -11.70680 -11.52029 -11.46494 -11.26035 -11.11524 -11.05824 -10.99510 -10.74985 -10.72362 -10.22594 -9.87514 -9.70266 -9.39964 -9.15256 -8.65811 -8.55739 -7.67309 -7.07765 -6.71826 -4.40539 0.69026 0.98432 1.25024 2.63843 2.93695 2.97708 3.07172 3.09526 3.11807 3.26749 3.58497 3.93834 4.08169 4.43957 4.59232 4.61021 4.75957 4.85134 4.87080 4.96924 5.16491 5.24350 5.37786 5.41620 5.51359 5.57706 5.65604 5.76227 5.95856 6.00568 6.06910 6.08524 6.10518 6.22128 6.28076 6.34077 6.61804 6.81283 6.85155 6.95050 7.02076 7.15839 7.20636 7.30177 7.51232 7.83416 7.92829 7.98671 8.19236 8.54876 8.83862 8.88419 10.23786 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003496 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.007011 B = 8006.981133 C = 9429.115785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.187 3.813 4 C -0.186 4.186 5 C 0.078 3.922 6 C -0.153 4.153 7 C -0.717 4.717 8 S 2.692 3.308 9 O -0.947 6.947 10 O -0.974 6.974 11 N -1.040 6.040 12 C 0.013 3.987 13 C -0.130 4.130 14 C -0.194 4.194 15 C 0.110 3.890 16 C -0.465 4.465 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.804 5.804 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.137 4.137 25 C -0.103 4.103 26 C 0.063 3.937 27 C -0.135 4.135 28 C -0.245 4.245 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.409 0.591 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.281 0.719 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.706 -3.441 -8.031 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.140 3.860 4 C -0.205 4.205 5 C 0.077 3.923 6 C -0.209 4.209 7 C -0.805 4.805 8 S 2.784 3.216 9 O -0.937 6.937 10 O -0.965 6.965 11 N -0.792 5.792 12 C -0.081 4.081 13 C -0.151 4.151 14 C -0.214 4.214 15 C 0.107 3.893 16 C -0.495 4.495 17 H 0.095 0.905 18 C -0.144 4.144 19 N -0.430 5.430 20 Si 0.737 3.263 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.157 4.157 25 C -0.124 4.124 26 C 0.062 3.938 27 C -0.192 4.192 28 C -0.265 4.265 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.077 0.923 32 H 0.157 0.843 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.092 0.908 40 H 0.138 0.862 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.991 -3.201 -8.862 16.048 hybrid contribution -0.426 -0.635 1.045 1.295 sum -13.417 -3.836 -7.817 15.994 Atomic orbital electron populations 1.23122 0.78100 1.04131 1.01689 1.86105 1.21732 1.26984 1.87659 1.19212 0.92404 0.83968 0.90381 1.20408 0.91215 0.98476 1.10447 1.19470 0.96582 0.90492 0.85801 1.21738 0.88359 1.05774 1.05070 1.30465 1.03965 1.21287 1.24738 1.01916 0.73858 0.73362 0.72454 1.93607 1.33351 1.85174 1.81529 1.93544 1.68957 1.63916 1.70056 1.52508 1.60238 1.40352 1.26141 1.16735 1.02309 0.90778 0.98305 1.20746 1.01141 0.92597 1.00598 1.20652 1.04430 0.97940 0.98377 1.17676 0.89583 0.91619 0.90385 1.19455 0.99812 1.11244 1.18991 0.90480 1.25859 0.97972 0.94276 0.96250 1.69785 1.15896 1.21963 1.35390 0.86302 0.78555 0.80044 0.81385 1.19082 1.20389 1.19006 1.20986 1.00193 0.94697 0.99810 1.20427 0.96783 0.97815 0.97407 1.19276 0.91399 0.95353 0.87788 1.21220 0.99497 0.93740 1.04694 1.21072 0.99972 0.91683 1.13750 0.92422 0.88041 0.92259 0.84323 0.89344 0.86329 0.90882 0.75534 0.87706 0.88351 0.90831 0.86189 0.88656 0.88484 0.90808 0.90646 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.73 10.50 -19.43 -0.20 -3.93 16 3 C 0.19 2.54 6.69 -39.22 -0.26 2.28 16 4 C -0.19 -2.74 9.61 -39.43 -0.38 -3.12 16 5 C 0.08 1.26 3.91 -104.64 -0.41 0.85 16 6 C -0.15 -2.59 7.60 36.01 0.27 -2.32 16 7 C -0.72 -11.60 4.40 -39.56 -0.17 -11.78 16 8 S 2.69 46.60 4.66 -107.50 -0.50 46.10 16 9 O -0.95 -18.96 13.42 -57.17 -0.77 -19.73 16 10 O -0.97 -16.85 14.95 -57.17 -0.85 -17.71 16 11 N -1.04 -17.85 5.58 32.51 0.18 -17.67 16 12 C 0.01 0.27 5.89 -83.69 -0.49 -0.22 16 13 C -0.13 -2.75 6.66 -39.77 -0.26 -3.01 16 14 C -0.19 -4.48 9.74 -39.26 -0.38 -4.86 16 15 C 0.11 2.78 5.49 -106.80 -0.59 2.20 16 16 C -0.46 -11.81 9.02 -37.87 -0.34 -12.15 16 17 H 0.08 1.88 7.85 -52.49 -0.41 1.46 16 18 C 0.07 1.78 5.30 -17.34 -0.09 1.69 16 19 N -0.80 -20.36 11.05 55.54 0.61 -19.75 16 20 Si 0.91 18.34 29.56 -169.99 -5.03 13.31 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 C -0.14 -3.36 8.56 -39.26 -0.34 -3.69 16 25 C -0.10 -2.26 9.90 -39.77 -0.39 -2.66 16 26 C 0.06 0.90 5.87 -104.65 -0.61 0.28 16 27 C -0.13 -1.62 8.37 36.01 0.30 -1.32 16 28 C -0.25 -3.11 8.67 -39.43 -0.34 -3.45 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.09 1.39 7.91 -51.93 -0.41 0.98 16 34 H 0.12 2.35 3.63 -51.93 -0.19 2.16 16 35 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 36 H 0.41 5.79 8.95 -34.47 -0.31 5.49 16 37 H 0.11 2.01 3.49 -52.49 -0.18 1.83 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 40 H 0.12 3.04 6.55 -52.48 -0.34 2.70 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 1.13 7.83 -51.93 -0.41 0.72 16 43 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 44 H 0.07 0.93 6.24 -51.93 -0.32 0.60 16 45 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -30.22 367.28 -9.89 -40.11 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.36 Total: 13.83 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: -3.50 Total: -40.10 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.80 Total: -37.42 kcal Atomic # 8 Polarization: -39.54 SS G_CDS: -1.83 Total: -41.37 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 46.60 SS G_CDS: -0.50 Total: 46.10 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.22 -9.89 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029048204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.557 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds