Wall clock time and date at job start Tue Mar 31 2020 05:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35903 * 117.00059 * 2 1 4 4 C 1.38732 * 120.05776 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94535 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.97601 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.05590 * 359.97438 * 5 4 3 8 8 S 1.76200 * 119.94555 * 179.97438 * 7 5 4 9 9 O 1.42101 * 106.40115 * 14.83596 * 8 7 5 10 10 O 1.42094 * 106.40108 * 147.75739 * 8 7 5 11 11 N 1.65597 * 107.21575 * 261.29975 * 8 7 5 12 12 C 1.38857 * 120.00420 * 66.36018 * 11 8 7 13 13 C 1.39565 * 119.84080 * 312.62068 * 12 11 8 14 14 C 1.36349 * 120.15970 * 179.71827 * 13 12 11 15 15 C 1.40880 * 119.83569 * 0.54508 * 14 13 12 16 16 C 1.41132 * 120.15460 * 179.69963 * 15 14 13 17 17 H 1.07995 * 120.00492 * 324.70880 * 16 15 14 18 18 C 1.39870 * 119.99849 * 144.71254 * 16 15 14 19 19 N 1.30898 * 119.99851 * 354.10033 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 174.10176 * 18 16 15 21 21 H 1.48510 * 109.46849 * 59.99819 * 20 18 16 22 22 H 1.48494 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47276 * 300.00211 * 20 18 16 24 24 C 1.40888 * 119.68776 * 359.72703 * 15 14 13 25 25 C 1.36342 * 119.84200 * 359.97438 * 24 15 14 26 26 C 1.38262 * 120.10725 * 0.02562 * 7 5 4 27 27 C 1.50704 * 119.96930 * 179.97438 * 26 7 5 28 28 C 1.38143 * 120.06164 * 0.02562 * 26 7 5 29 29 H 1.09001 * 109.47160 * 60.00219 * 1 2 3 30 30 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47211 * 299.99523 * 1 2 3 32 32 H 1.08002 * 120.02602 * 0.29472 * 4 3 2 33 33 H 1.09007 * 109.46510 * 97.04166 * 6 5 4 34 34 H 1.08993 * 109.47475 * 217.04865 * 6 5 4 35 35 H 1.09005 * 109.46687 * 337.05182 * 6 5 4 36 36 H 0.97001 * 120.00015 * 246.35411 * 11 8 7 37 37 H 1.08001 * 119.92088 * 359.97119 * 13 12 11 38 38 H 1.07997 * 120.07823 * 180.27093 * 14 13 12 39 39 H 0.97004 * 119.99551 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.07791 * 179.97438 * 24 15 14 41 41 H 1.07995 * 119.92244 * 179.97438 * 25 24 15 42 42 H 1.08998 * 109.47013 * 84.20810 * 27 26 7 43 43 H 1.09002 * 109.47419 * 204.20949 * 27 26 7 44 44 H 1.08998 * 109.47283 * 324.21359 * 27 26 7 45 45 H 1.08002 * 120.03229 * 180.02562 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 5.5609 2.5981 -0.0012 7 6 3.3018 3.6759 0.0005 8 16 4.1017 5.2459 0.0019 9 8 5.4581 5.0054 -0.3468 10 8 3.2568 6.1272 -0.7250 11 7 4.1105 5.7901 1.5659 12 6 4.8559 5.1232 2.5290 13 6 4.7768 3.7334 2.6291 14 6 5.5103 3.0714 3.5687 15 6 6.3408 3.7948 4.4471 16 6 7.0981 3.1170 5.4263 17 1 6.6957 2.2377 5.9073 18 6 8.3699 3.5840 5.7739 19 7 8.9055 4.5782 5.1121 20 14 9.3042 2.7887 7.1825 21 1 9.5194 1.3500 6.8839 22 1 10.6177 3.4614 7.3476 23 1 8.5183 2.9219 8.4354 24 6 6.4113 5.1981 4.3439 25 6 5.6769 5.8464 3.3956 26 6 1.9210 3.6048 0.0011 27 6 1.1020 4.8698 0.0022 28 6 1.2914 2.3751 0.0016 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0208 0.3800 -0.0058 33 1 5.9160 2.7444 -1.0213 34 1 5.8801 3.4361 0.6184 35 1 5.9750 1.6723 0.3984 36 1 3.5949 6.5749 1.8092 37 1 4.1361 3.1805 1.9581 38 1 5.4514 1.9955 3.6421 39 1 9.7874 4.9023 5.3534 40 1 7.0456 5.7590 5.0144 41 1 5.7296 6.9221 3.3156 42 1 0.9912 5.2318 -1.0199 43 1 0.1179 4.6653 0.4239 44 1 1.6046 5.6275 0.6034 45 1 0.2128 2.3201 0.0016 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029048204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:48 Heat of formation + Delta-G solvation = -73.916584 kcal Electronic energy + Delta-G solvation = -30986.573205 eV Core-core repulsion = 26867.777473 eV Total energy + Delta-G solvation = -4118.795732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48588 -39.96658 -38.99920 -38.52649 -36.97733 -36.47787 -34.73774 -34.41837 -32.52136 -31.36444 -30.46137 -28.88002 -28.50707 -27.26212 -26.52082 -23.66718 -22.98371 -22.63695 -22.01055 -20.52619 -19.28298 -18.85851 -18.60046 -18.57194 -18.01713 -17.65620 -17.05724 -16.80930 -16.15096 -15.94261 -15.40510 -15.18945 -15.13025 -14.98821 -14.56980 -14.43332 -14.25689 -14.13858 -13.96373 -13.82055 -13.70235 -13.58215 -13.25837 -13.21920 -13.12687 -12.96741 -12.88597 -12.81726 -12.63639 -12.40711 -12.12611 -11.99468 -11.94501 -11.62226 -11.55567 -11.41285 -11.10964 -10.86658 -9.76590 -9.63780 -9.46935 -8.86371 -8.52460 -6.30476 -0.64040 -0.18515 0.16949 0.89032 1.11452 1.42488 1.52020 1.53456 1.97899 2.15233 2.26013 2.36957 2.71945 2.81792 3.31690 3.53829 3.64844 3.67502 3.96181 4.13270 4.23820 4.29172 4.34595 4.37390 4.38149 4.41554 4.57909 4.60252 4.68867 4.71073 4.74185 4.77581 4.93151 5.06040 5.10821 5.15490 5.20981 5.21807 5.22975 5.38460 5.44477 5.57825 5.64862 5.73760 6.08795 6.12380 6.23402 6.24023 6.40637 6.69619 6.98212 7.03573 8.44753 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003496 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.007011 B = 8006.981133 C = 9429.115785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.323 6.323 3 C 0.190 3.810 4 C -0.198 4.198 5 C 0.062 3.938 6 C -0.154 4.154 7 C -0.734 4.734 8 S 2.702 3.298 9 O -0.979 6.979 10 O -0.974 6.974 11 N -1.036 6.036 12 C 0.031 3.969 13 C -0.128 4.128 14 C -0.203 4.203 15 C 0.079 3.921 16 C -0.499 4.499 17 H 0.077 0.923 18 C 0.032 3.968 19 N -0.840 5.840 20 Si 0.982 3.018 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.260 1.260 24 C -0.156 4.156 25 C -0.112 4.112 26 C 0.059 3.941 27 C -0.142 4.142 28 C -0.239 4.239 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.425 0.575 37 H 0.127 0.873 38 H 0.104 0.896 39 H 0.285 0.715 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.436 -4.416 -8.534 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.236 6.236 3 C 0.143 3.857 4 C -0.218 4.218 5 C 0.060 3.940 6 C -0.211 4.211 7 C -0.824 4.824 8 S 2.796 3.204 9 O -0.969 6.969 10 O -0.964 6.964 11 N -0.789 5.789 12 C -0.064 4.064 13 C -0.148 4.148 14 C -0.223 4.223 15 C 0.077 3.923 16 C -0.530 4.530 17 H 0.095 0.905 18 C -0.181 4.181 19 N -0.467 5.467 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.184 1.184 24 C -0.176 4.176 25 C -0.133 4.133 26 C 0.057 3.943 27 C -0.198 4.198 28 C -0.258 4.258 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.262 0.738 37 H 0.145 0.855 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.087 0.913 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -15.740 -4.135 -9.370 18.778 hybrid contribution 0.173 -0.381 1.010 1.093 sum -15.567 -4.516 -8.360 18.238 Atomic orbital electron populations 1.23520 0.75585 1.06219 1.02945 1.86109 1.24297 1.26122 1.87028 1.19309 0.92179 0.85052 0.89167 1.20545 0.92382 0.98195 1.10629 1.19389 0.95891 0.91309 0.87376 1.21656 0.89711 1.04912 1.04807 1.30194 1.05108 1.19897 1.27184 1.01394 0.73233 0.73718 0.72009 1.93582 1.35532 1.85792 1.81984 1.93541 1.68615 1.64507 1.69779 1.52419 1.59980 1.40899 1.25572 1.16768 1.01097 0.90847 0.97673 1.20976 1.00792 0.92988 1.00053 1.20804 1.04449 0.98388 0.98625 1.17983 0.90678 0.92219 0.91429 1.19701 1.00927 1.12026 1.20339 0.90487 1.26669 0.98411 0.94622 0.98371 1.69865 1.16470 1.23436 1.36952 0.85244 0.77254 0.79030 0.78104 1.18667 1.19683 1.18392 1.20932 1.01133 0.94724 1.00791 1.20679 0.96437 0.99111 0.97090 1.19604 0.90655 0.96983 0.87032 1.21361 1.00812 0.92525 1.05112 1.21442 1.01782 0.90545 1.11999 0.90834 0.85799 0.91189 0.83464 0.89018 0.89221 0.90033 0.73756 0.85520 0.87754 0.90462 0.87859 0.86508 0.88115 0.87455 0.91318 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.32 -6.69 10.50 -92.46 -0.97 -7.66 16 3 C 0.19 4.64 6.69 22.51 0.15 4.79 16 4 C -0.20 -5.54 9.61 22.36 0.21 -5.33 16 5 C 0.06 1.96 3.91 -19.88 -0.08 1.88 16 6 C -0.15 -5.31 7.60 71.24 0.54 -4.77 16 7 C -0.73 -22.77 4.40 22.28 0.10 -22.67 16 8 S 2.70 91.76 4.66 -56.49 -0.26 91.50 16 9 O -0.98 -39.73 13.42 -128.00 -1.72 -41.45 16 10 O -0.97 -32.40 14.95 -128.00 -1.91 -34.31 16 11 N -1.04 -34.65 5.58 -51.06 -0.29 -34.94 16 12 C 0.03 1.29 5.89 38.67 0.23 1.52 16 13 C -0.13 -5.40 6.66 22.15 0.15 -5.25 16 14 C -0.20 -9.58 9.74 22.48 0.22 -9.37 16 15 C 0.08 4.17 5.49 -21.27 -0.12 4.05 16 16 C -0.50 -26.34 9.02 23.38 0.21 -26.12 16 17 H 0.08 3.88 7.85 -2.91 -0.02 3.86 16 18 C 0.03 1.61 5.30 85.23 0.45 2.06 16 19 N -0.84 -44.15 11.05 21.82 0.24 -43.91 16 20 Si 0.98 38.26 29.56 68.60 2.03 40.28 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 24 C -0.16 -7.94 8.56 22.48 0.19 -7.75 16 25 C -0.11 -4.99 9.90 22.15 0.22 -4.77 16 26 C 0.06 1.50 5.87 -19.88 -0.12 1.38 16 27 C -0.14 -2.92 8.37 71.24 0.60 -2.33 16 28 C -0.24 -5.15 8.67 22.37 0.19 -4.96 16 29 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 32 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 33 H 0.09 2.97 7.91 -2.38 -0.02 2.95 16 34 H 0.09 3.64 3.63 -2.39 -0.01 3.63 16 35 H 0.08 2.54 8.04 -2.38 -0.02 2.52 16 36 H 0.42 11.42 8.95 -96.75 -0.87 10.56 16 37 H 0.13 4.79 3.49 -2.91 -0.01 4.78 16 38 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.28 13.74 8.30 -92.71 -0.77 12.97 16 40 H 0.10 5.53 6.55 -2.91 -0.02 5.51 16 41 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 42 H 0.10 2.03 7.83 -2.39 -0.02 2.01 16 43 H 0.11 1.47 8.05 -2.39 -0.02 1.45 16 44 H 0.07 1.51 6.24 -2.39 -0.01 1.49 16 45 H 0.17 2.32 6.30 -2.91 -0.02 2.30 16 Total: -1.00 -67.28 367.28 1.57 -65.71 By element: Atomic # 1 Polarization: 40.97 SS G_CDS: 0.19 Total: 41.16 kcal Atomic # 6 Polarization: -80.65 SS G_CDS: 4.26 Total: -76.39 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -0.04 Total: -78.84 kcal Atomic # 8 Polarization: -78.82 SS G_CDS: -4.60 Total: -83.42 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.28 kcal Atomic # 16 Polarization: 91.76 SS G_CDS: -0.26 Total: 91.50 kcal Total: -67.28 1.57 -65.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029048204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.208 kcal (2) G-P(sol) polarization free energy of solvation -67.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds