Wall clock time and date at job start Tue Mar 31 2020 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 117.00174 * 2 1 4 4 O 1.21462 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.47728 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.39645 * 120.14986 * 359.97438 * 5 3 2 7 7 C 1.37925 * 119.84978 * 180.02562 * 6 5 3 8 8 C 1.38392 * 120.14474 * 359.71745 * 7 6 5 9 9 C 1.38349 * 120.30547 * 0.56080 * 8 7 6 10 10 S 1.76195 * 119.92624 * 179.71849 * 9 8 7 11 11 O 1.42107 * 106.40226 * 17.73562 * 10 9 8 12 12 O 1.42096 * 106.40253 * 150.65575 * 10 9 8 13 13 N 1.65593 * 107.21945 * 264.19734 * 10 9 8 14 14 C 1.38862 * 120.00103 * 62.86044 * 13 10 9 15 15 C 1.39563 * 119.84389 * 253.79742 * 14 13 10 16 16 C 1.36335 * 120.16308 * 179.71736 * 15 14 13 17 17 C 1.40887 * 119.83319 * 0.55276 * 16 15 14 18 18 C 1.41145 * 120.15492 * 179.70005 * 17 16 15 19 19 H 1.07997 * 119.99605 * 205.14869 * 18 17 16 20 20 C 1.39867 * 119.99664 * 25.14850 * 18 17 16 21 21 N 1.30902 * 120.00218 * 15.23339 * 20 18 17 22 22 Si 1.86799 * 119.99688 * 195.22641 * 20 18 17 23 23 H 1.48501 * 109.46823 * 60.00574 * 22 20 18 24 24 H 1.48498 * 109.47282 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47479 * 300.00747 * 22 20 18 26 26 C 1.40884 * 119.69187 * 359.72284 * 17 16 15 27 27 C 1.36342 * 119.83537 * 359.97438 * 26 17 16 28 28 C 1.37962 * 120.14721 * 359.44170 * 9 8 7 29 29 H 1.09000 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46959 * 299.99782 * 1 2 3 31 31 H 1.09000 * 109.46946 * 59.99240 * 1 2 3 32 32 H 1.08002 * 120.07751 * 0.04242 * 6 5 3 33 33 H 1.07997 * 119.92854 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.84610 * 180.27670 * 8 7 6 35 35 H 0.97007 * 120.00472 * 242.85836 * 13 10 9 36 36 H 1.08006 * 119.91702 * 359.97438 * 15 14 13 37 37 H 1.08000 * 120.08498 * 180.27409 * 16 15 14 38 38 H 0.97001 * 119.99830 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.08321 * 179.97438 * 26 17 16 40 40 H 1.08000 * 119.92153 * 179.97438 * 27 26 17 41 41 H 1.07997 * 120.07538 * 180.25595 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3024 0.1082 0.0017 7 6 5.6794 0.1875 0.0027 8 6 6.3044 1.4222 -0.0032 9 6 5.5541 2.5846 0.0015 10 16 6.3603 4.1513 0.0014 11 8 7.6970 3.9147 -0.4190 12 8 5.4850 5.0529 -0.6619 13 7 6.4479 4.6575 1.5756 14 6 7.1780 3.9238 2.5013 15 6 6.5134 3.1556 3.4584 16 6 7.2237 2.4282 4.3667 17 6 8.6319 2.4625 4.3449 18 6 9.3740 1.7170 5.2861 19 1 10.3743 2.0256 5.5515 20 6 8.8137 0.5787 5.8749 21 7 7.7448 0.0312 5.3541 22 14 9.5910 -0.1603 7.4043 23 1 9.5891 0.8462 8.4961 24 1 8.8135 -1.3524 7.8280 25 1 10.9887 -0.5624 7.1043 26 6 9.2961 3.2447 3.3796 27 6 8.5729 3.9622 2.4734 28 6 4.1760 2.5197 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 3.8158 -0.8560 0.0014 33 1 6.2711 -0.7159 0.0031 34 1 7.3830 1.4787 -0.0068 35 1 5.9894 5.4667 1.8512 36 1 5.4337 3.1341 3.4769 37 1 6.7081 1.8307 5.1040 38 1 7.3565 -0.7584 5.7623 39 1 10.3754 3.2759 3.3573 40 1 9.0806 4.5626 1.7331 41 1 3.5914 3.4278 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029967302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:18 Heat of formation + Delta-G solvation = -109.916826 kcal Electronic energy + Delta-G solvation = -29523.227939 eV Core-core repulsion = 25267.038025 eV Total energy + Delta-G solvation = -4256.189914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70348 -38.85104 -38.06769 -36.83708 -36.57564 -35.51053 -34.85581 -32.90457 -31.82418 -31.28866 -29.66767 -28.81628 -27.98133 -24.83973 -24.30668 -23.24747 -21.27276 -21.22587 -20.85538 -19.38264 -18.34952 -17.50523 -17.37099 -17.23732 -16.66750 -16.53509 -16.22014 -15.91227 -15.46828 -15.25085 -14.44211 -14.16639 -14.05809 -13.77814 -13.74934 -13.68594 -12.90947 -12.79494 -12.50149 -12.41275 -12.27692 -12.17315 -11.81833 -11.74947 -11.71979 -11.58638 -11.41802 -11.26650 -11.02886 -10.93404 -10.90585 -10.81444 -10.59904 -10.01471 -9.86322 -9.52630 -9.34581 -9.17767 -8.99817 -7.72694 -7.44001 -6.96480 -4.55349 0.46132 0.71516 0.96378 2.33263 2.45422 2.53688 2.95405 2.97387 2.98355 3.04817 3.32219 3.57780 3.77278 4.06483 4.39861 4.45128 4.58552 4.80424 4.84936 4.90928 4.95122 5.08406 5.23481 5.36550 5.47012 5.48797 5.70921 5.91423 6.02046 6.11142 6.14249 6.18522 6.22173 6.31122 6.63159 6.82345 6.87382 7.01218 7.15355 7.30040 7.44272 7.53697 7.84654 7.89414 7.95873 8.09661 8.43033 8.67319 8.77699 9.95240 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.003569 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.904145 B = 7843.326057 C = 9955.432760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.504 6.504 5 C -0.155 4.155 6 C -0.013 4.013 7 C -0.147 4.147 8 C 0.032 3.968 9 C -0.675 4.675 10 S 2.676 3.324 11 O -0.952 6.952 12 O -0.976 6.976 13 N -1.028 6.028 14 C -0.039 4.039 15 C -0.084 4.084 16 C -0.165 4.165 17 C 0.119 3.881 18 C -0.445 4.445 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.783 5.783 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.224 4.224 27 C -0.062 4.062 28 C 0.043 3.957 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.409 0.591 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.284 0.716 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 -3.273 -6.768 11.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.358 3.642 4 O -0.393 6.393 5 C -0.157 4.157 6 C -0.031 4.031 7 C -0.166 4.166 8 C 0.012 3.988 9 C -0.760 4.760 10 S 2.767 3.233 11 O -0.942 6.942 12 O -0.966 6.966 13 N -0.782 5.782 14 C -0.135 4.135 15 C -0.105 4.105 16 C -0.185 4.185 17 C 0.116 3.884 18 C -0.474 4.474 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.244 4.244 27 C -0.083 4.083 28 C 0.024 3.976 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.246 0.754 36 H 0.109 0.891 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.756 -2.894 -7.617 11.961 hybrid contribution -0.584 -0.793 1.178 1.536 sum -9.340 -3.688 -6.438 11.929 Atomic orbital electron populations 1.23295 0.75840 1.03792 1.02752 1.86532 1.23677 1.32566 1.84430 1.21121 0.88932 0.81513 0.72629 1.90844 1.66690 1.35940 1.45800 1.19070 0.89067 0.95140 1.12446 1.21705 0.94146 0.97890 0.89400 1.21332 0.94363 0.98542 1.02327 1.21337 1.01098 0.91018 0.85308 1.31120 1.04163 1.22784 1.17936 1.02999 0.73895 0.73097 0.73264 1.93567 1.34698 1.85542 1.80376 1.93544 1.67514 1.62356 1.73224 1.52166 1.64230 1.35022 1.26826 1.16612 0.89515 1.07425 0.99942 1.20635 0.97567 0.96472 0.95830 1.21013 0.94206 1.02185 1.01095 1.17754 0.92155 0.89023 0.89488 1.19674 1.01569 1.07185 1.19007 0.90001 1.25991 0.94379 0.96533 0.97670 1.69827 1.17995 1.17097 1.35801 0.86284 0.80063 0.78688 0.81326 1.18651 1.20201 1.18802 1.20677 0.98026 1.06458 0.99248 1.20614 0.92482 0.97715 0.97526 1.20902 0.92459 0.97590 0.86647 0.87904 0.91679 0.91782 0.83912 0.83979 0.83143 0.75431 0.89148 0.85913 0.90492 0.88333 0.88108 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.15 9.82 -40.52 -0.40 -4.54 16 3 C 0.51 7.27 7.90 34.61 0.27 7.54 16 4 O -0.50 -8.22 16.14 -19.24 -0.31 -8.53 16 5 C -0.16 -2.23 5.87 -104.98 -0.62 -2.84 16 6 C -0.01 -0.16 9.62 -39.17 -0.38 -0.54 16 7 C -0.15 -1.91 10.03 -39.64 -0.40 -2.31 16 8 C 0.03 0.48 9.52 -39.48 -0.38 0.11 16 9 C -0.68 -10.87 5.85 -39.64 -0.23 -11.10 16 10 S 2.68 45.82 5.70 -107.50 -0.61 45.21 16 11 O -0.95 -18.36 16.06 -57.17 -0.92 -19.28 16 12 O -0.98 -17.87 17.43 -57.17 -1.00 -18.87 16 13 N -1.03 -17.43 5.65 32.51 0.18 -17.25 16 14 C -0.04 -0.77 5.80 -83.69 -0.49 -1.26 16 15 C -0.08 -1.76 9.90 -39.77 -0.39 -2.16 16 16 C -0.16 -3.87 8.63 -39.26 -0.34 -4.21 16 17 C 0.12 2.89 5.58 -106.79 -0.60 2.29 16 18 C -0.45 -10.74 9.04 -37.87 -0.34 -11.08 16 19 H 0.08 1.89 7.89 -52.49 -0.41 1.47 16 20 C 0.07 1.68 5.19 -17.34 -0.09 1.59 16 21 N -0.78 -18.31 10.83 55.54 0.60 -17.70 16 22 Si 0.91 17.10 29.59 -169.99 -5.03 12.07 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 24 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 26 C -0.22 -5.06 9.74 -39.26 -0.38 -5.44 16 27 C -0.06 -1.32 9.18 -39.77 -0.37 -1.68 16 28 C 0.04 0.67 9.06 -39.17 -0.36 0.32 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.14 1.39 7.61 -52.49 -0.40 0.99 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.15 2.29 7.49 -52.48 -0.39 1.89 16 35 H 0.41 5.88 8.95 -34.47 -0.31 5.57 16 36 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.12 2.99 6.09 -52.49 -0.32 2.67 16 38 H 0.28 6.06 8.30 -40.82 -0.34 5.72 16 39 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.10 2.02 7.84 -52.49 -0.41 1.61 16 41 H 0.15 2.26 7.34 -52.49 -0.39 1.87 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -30.00 374.11 -10.15 -40.15 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -4.30 Total: 12.51 kcal Atomic # 6 Polarization: -25.39 SS G_CDS: -4.01 Total: -29.40 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.79 Total: -34.95 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -2.62 Total: -51.22 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 45.82 SS G_CDS: -0.61 Total: 45.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.00 -10.15 -40.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.767 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds