Wall clock time and date at job start Tue Mar 31 2020 04:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34712 * 117.00174 * 2 1 4 4 O 1.21462 * 120.00186 * 0.02562 * 3 2 1 5 5 C 1.47728 * 119.99718 * 179.97438 * 3 2 1 6 6 C 1.39645 * 120.14986 * 359.97438 * 5 3 2 7 7 C 1.37925 * 119.84978 * 180.02562 * 6 5 3 8 8 C 1.38392 * 120.14474 * 359.71745 * 7 6 5 9 9 C 1.38349 * 120.30547 * 0.56080 * 8 7 6 10 10 S 1.76195 * 119.92624 * 179.71849 * 9 8 7 11 11 O 1.42107 * 106.40226 * 17.73562 * 10 9 8 12 12 O 1.42096 * 106.40253 * 150.65575 * 10 9 8 13 13 N 1.65593 * 107.21945 * 264.19734 * 10 9 8 14 14 C 1.38862 * 120.00103 * 62.86044 * 13 10 9 15 15 C 1.39563 * 119.84389 * 253.79742 * 14 13 10 16 16 C 1.36335 * 120.16308 * 179.71736 * 15 14 13 17 17 C 1.40887 * 119.83319 * 0.55276 * 16 15 14 18 18 C 1.41145 * 120.15492 * 179.70005 * 17 16 15 19 19 H 1.07997 * 119.99605 * 205.14869 * 18 17 16 20 20 C 1.39867 * 119.99664 * 25.14850 * 18 17 16 21 21 N 1.30902 * 120.00218 * 15.23339 * 20 18 17 22 22 Si 1.86799 * 119.99688 * 195.22641 * 20 18 17 23 23 H 1.48501 * 109.46823 * 60.00574 * 22 20 18 24 24 H 1.48498 * 109.47282 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47479 * 300.00747 * 22 20 18 26 26 C 1.40884 * 119.69187 * 359.72284 * 17 16 15 27 27 C 1.36342 * 119.83537 * 359.97438 * 26 17 16 28 28 C 1.37962 * 120.14721 * 359.44170 * 9 8 7 29 29 H 1.09000 * 109.47600 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46959 * 299.99782 * 1 2 3 31 31 H 1.09000 * 109.46946 * 59.99240 * 1 2 3 32 32 H 1.08002 * 120.07751 * 0.04242 * 6 5 3 33 33 H 1.07997 * 119.92854 * 180.02562 * 7 6 5 34 34 H 1.08004 * 119.84610 * 180.27670 * 8 7 6 35 35 H 0.97007 * 120.00472 * 242.85836 * 13 10 9 36 36 H 1.08006 * 119.91702 * 359.97438 * 15 14 13 37 37 H 1.08000 * 120.08498 * 180.27409 * 16 15 14 38 38 H 0.97001 * 119.99830 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.08321 * 179.97438 * 26 17 16 40 40 H 1.08000 * 119.92153 * 179.97438 * 27 26 17 41 41 H 1.07997 * 120.07538 * 180.25595 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.3024 0.1082 0.0017 7 6 5.6794 0.1875 0.0027 8 6 6.3044 1.4222 -0.0032 9 6 5.5541 2.5846 0.0015 10 16 6.3603 4.1513 0.0014 11 8 7.6970 3.9147 -0.4190 12 8 5.4850 5.0529 -0.6619 13 7 6.4479 4.6575 1.5756 14 6 7.1780 3.9238 2.5013 15 6 6.5134 3.1556 3.4584 16 6 7.2237 2.4282 4.3667 17 6 8.6319 2.4625 4.3449 18 6 9.3740 1.7170 5.2861 19 1 10.3743 2.0256 5.5515 20 6 8.8137 0.5787 5.8749 21 7 7.7448 0.0312 5.3541 22 14 9.5910 -0.1603 7.4043 23 1 9.5891 0.8462 8.4961 24 1 8.8135 -1.3524 7.8280 25 1 10.9887 -0.5624 7.1043 26 6 9.2961 3.2447 3.3796 27 6 8.5729 3.9622 2.4734 28 6 4.1760 2.5197 0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 3.8158 -0.8560 0.0014 33 1 6.2711 -0.7159 0.0031 34 1 7.3830 1.4787 -0.0068 35 1 5.9894 5.4667 1.8512 36 1 5.4337 3.1341 3.4769 37 1 6.7081 1.8307 5.1040 38 1 7.3565 -0.7584 5.7623 39 1 10.3754 3.2759 3.3573 40 1 9.0806 4.5626 1.7331 41 1 3.5914 3.4278 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029967302.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:17 Heat of formation + Delta-G solvation = -127.291309 kcal Electronic energy + Delta-G solvation = -29523.981353 eV Core-core repulsion = 25267.038025 eV Total energy + Delta-G solvation = -4256.943328 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.086 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.75101 -39.95288 -39.74718 -38.31367 -37.60566 -36.99384 -36.49156 -34.55615 -32.94621 -32.40506 -31.40736 -30.52189 -28.75094 -26.55029 -25.36713 -24.38825 -22.95490 -22.59869 -22.29439 -20.67257 -19.63358 -19.23560 -18.69715 -18.40957 -18.17366 -17.49630 -17.30585 -17.16206 -17.07083 -16.55257 -15.76347 -15.72015 -15.41956 -15.16599 -14.74647 -14.67071 -14.55558 -14.07218 -13.92111 -13.82788 -13.49779 -13.33452 -13.27293 -13.23650 -13.14527 -13.08384 -12.84800 -12.79715 -12.55302 -12.38607 -12.06549 -11.89484 -11.79017 -11.64682 -11.52952 -11.02661 -10.69498 -10.55727 -10.30335 -9.47417 -9.18142 -8.65115 -6.34276 -0.74667 -0.56880 -0.21431 0.86485 1.20247 1.23772 1.43399 1.50981 1.52554 1.55437 1.98873 2.22138 2.37593 2.68998 2.72033 3.28483 3.49404 3.64658 3.70683 3.86013 3.94804 4.20016 4.26981 4.31094 4.36728 4.45463 4.54264 4.62647 4.67688 4.69105 4.81877 4.95493 5.07180 5.09373 5.15383 5.16660 5.30048 5.40809 5.54980 5.68315 5.79673 6.09036 6.15533 6.28069 6.40232 6.50530 6.67574 6.91227 7.02220 8.29046 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.009197 B = 0.003569 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.904145 B = 7843.326057 C = 9955.432760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.516 3.484 4 O -0.532 6.532 5 C -0.164 4.164 6 C 0.001 3.999 7 C -0.143 4.143 8 C 0.012 3.988 9 C -0.685 4.685 10 S 2.697 3.303 11 O -0.975 6.975 12 O -0.987 6.987 13 N -1.026 6.026 14 C -0.020 4.020 15 C -0.081 4.081 16 C -0.181 4.181 17 C 0.094 3.906 18 C -0.482 4.482 19 H 0.080 0.920 20 C 0.039 3.961 21 N -0.810 5.810 22 Si 0.980 3.020 23 H -0.262 1.262 24 H -0.268 1.268 25 H -0.260 1.260 26 C -0.236 4.236 27 C -0.069 4.069 28 C 0.031 3.969 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.146 0.854 35 H 0.422 0.578 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.291 0.709 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.723 -4.906 -6.928 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.362 3.638 4 O -0.424 6.424 5 C -0.166 4.166 6 C -0.017 4.017 7 C -0.161 4.161 8 C -0.007 4.007 9 C -0.772 4.772 10 S 2.790 3.210 11 O -0.965 6.965 12 O -0.977 6.977 13 N -0.782 5.782 14 C -0.116 4.116 15 C -0.103 4.103 16 C -0.202 4.202 17 C 0.091 3.909 18 C -0.511 4.511 19 H 0.098 0.902 20 C -0.178 4.178 21 N -0.435 5.435 22 Si 0.801 3.199 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.185 1.185 26 C -0.256 4.256 27 C -0.090 4.090 28 C 0.011 3.989 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.194 0.806 33 H 0.189 0.811 34 H 0.164 0.836 35 H 0.261 0.739 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -9.776 -4.501 -7.769 13.274 hybrid contribution -0.426 -0.287 1.062 1.180 sum -10.202 -4.788 -6.707 13.114 Atomic orbital electron populations 1.23659 0.73822 1.06209 1.02788 1.86517 1.25578 1.30933 1.83703 1.21102 0.88833 0.81859 0.71994 1.90831 1.67240 1.37019 1.47270 1.19233 0.89632 0.95335 1.12363 1.22082 0.93843 0.98631 0.87101 1.21689 0.94936 0.98637 1.00885 1.21493 1.01082 0.91877 0.86240 1.30768 1.04427 1.22049 1.19950 1.01984 0.73212 0.73179 0.72586 1.93539 1.36191 1.86029 1.80703 1.93531 1.67649 1.63280 1.73227 1.52070 1.64196 1.35640 1.26307 1.16541 0.89309 1.06250 0.99507 1.20772 0.98379 0.95810 0.95306 1.20960 0.94179 1.03199 1.01826 1.18029 0.92756 0.89859 0.90275 1.19895 1.02029 1.08510 1.20621 0.90155 1.26710 0.94747 0.96371 0.99959 1.69860 1.19005 1.17653 1.36956 0.85270 0.79230 0.77954 0.77464 1.18644 1.19201 1.18468 1.20821 0.98522 1.06805 0.99450 1.20794 0.93107 0.97678 0.97435 1.20946 0.92231 0.98367 0.87324 0.84301 0.91915 0.91579 0.80574 0.81067 0.83623 0.73886 0.87467 0.87234 0.89811 0.87842 0.87020 0.83609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.35 -7.29 9.82 -56.21 -0.55 -7.85 16 3 C 0.52 13.82 7.90 70.33 0.56 14.37 16 4 O -0.53 -16.97 16.14 19.96 0.32 -16.65 16 5 C -0.16 -4.42 5.87 -20.10 -0.12 -4.54 16 6 C 0.00 0.03 9.62 22.54 0.22 0.25 16 7 C -0.14 -3.38 10.03 22.23 0.22 -3.16 16 8 C 0.01 0.37 9.52 22.33 0.21 0.58 16 9 C -0.68 -21.59 5.85 22.23 0.13 -21.46 16 10 S 2.70 91.16 5.70 -56.49 -0.32 90.84 16 11 O -0.97 -37.36 16.06 -128.00 -2.06 -39.42 16 12 O -0.99 -35.61 17.43 -128.00 -2.23 -37.84 16 13 N -1.03 -34.07 5.65 -51.06 -0.29 -34.35 16 14 C -0.02 -0.79 5.80 38.67 0.22 -0.56 16 15 C -0.08 -3.42 9.90 22.15 0.22 -3.20 16 16 C -0.18 -8.66 8.63 22.47 0.19 -8.47 16 17 C 0.09 4.66 5.58 -21.27 -0.12 4.54 16 18 C -0.48 -23.78 9.04 23.38 0.21 -23.57 16 19 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 20 C 0.04 1.78 5.19 85.23 0.44 2.23 16 21 N -0.81 -38.13 10.83 21.82 0.24 -37.90 16 22 Si 0.98 34.88 29.59 68.60 2.03 36.91 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.27 -9.02 7.11 99.48 0.71 -8.31 16 25 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 26 C -0.24 -10.85 9.74 22.48 0.22 -10.63 16 27 C -0.07 -2.93 9.18 22.15 0.20 -2.72 16 28 C 0.03 0.94 9.06 22.54 0.20 1.14 16 29 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.18 2.69 7.61 -2.91 -0.02 2.67 16 33 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.15 4.40 7.49 -2.91 -0.02 4.37 16 35 H 0.42 11.73 8.95 -96.74 -0.87 10.86 16 36 H 0.11 4.08 8.06 -2.91 -0.02 4.05 16 37 H 0.11 5.47 6.09 -2.91 -0.02 5.45 16 38 H 0.29 12.37 8.30 -92.71 -0.77 11.60 16 39 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.11 4.44 7.84 -2.91 -0.02 4.42 16 41 H 0.15 4.42 7.34 -2.91 -0.02 4.39 16 Total: -1.00 -64.82 374.11 1.58 -63.23 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: 0.23 Total: 36.64 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 4.22 Total: -53.61 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -0.05 Total: -72.25 kcal Atomic # 8 Polarization: -97.24 SS G_CDS: -4.52 Total: -101.76 kcal Atomic # 14 Polarization: 34.88 SS G_CDS: 2.03 Total: 36.91 kcal Atomic # 16 Polarization: 91.16 SS G_CDS: -0.32 Total: 90.84 kcal Total: -64.82 1.58 -63.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029967302.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.056 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds