Wall clock time and date at job start Tue Mar 31 2020 05:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08995 * 109.55119 * 2 1 4 4 C 1.53174 * 109.55128 * 239.79941 * 2 1 3 5 5 C 1.52971 * 109.09749 * 169.64043 * 4 2 1 6 6 C 1.52323 * 108.82000 * 50.85914 * 5 4 2 7 7 C 1.33517 * 123.37086 * 342.65596 * 6 5 4 8 8 S 1.75562 * 111.25363 * 180.02562 * 7 6 5 9 9 C 1.75656 * 92.43070 * 359.91937 * 8 7 6 10 10 N 1.35146 * 130.77609 * 180.08814 * 9 8 7 11 11 C 1.29977 * 121.62343 * 180.02562 * 10 9 8 12 12 N 1.35797 * 121.88910 * 0.04910 * 11 10 9 13 13 C 1.46496 * 119.82525 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.47088 * 269.97806 * 13 12 11 15 15 O 1.21284 * 120.00052 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00549 * 180.02562 * 14 13 12 17 17 C 1.46493 * 120.00283 * 180.02562 * 16 14 13 18 18 C 1.50695 * 109.47122 * 180.02562 * 17 16 14 19 19 H 1.08001 * 120.00274 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00405 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99652 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00586 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47076 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47541 * 119.99738 * 22 20 18 25 25 H 1.48499 * 109.47334 * 240.00197 * 22 20 18 26 26 C 1.34757 * 120.34881 * 359.94773 * 12 11 10 27 27 O 1.21893 * 120.68217 * 179.97438 * 26 12 11 28 28 C 1.38759 * 109.61650 * 0.31005 * 9 8 7 29 29 C 1.51867 * 124.35163 * 0.09067 * 7 6 5 30 30 H 1.08999 * 109.46836 * 180.20158 * 1 2 3 31 31 H 1.08998 * 109.46667 * 300.20289 * 1 2 3 32 32 H 1.08994 * 109.47274 * 60.20269 * 1 2 3 33 33 H 1.08997 * 109.53792 * 49.75828 * 4 2 1 34 34 H 1.09003 * 109.59719 * 289.55770 * 4 2 1 35 35 H 1.09004 * 109.58086 * 291.06137 * 5 4 2 36 36 H 1.08997 * 109.69112 * 170.72027 * 5 4 2 37 37 H 1.07998 * 119.06064 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47315 * 29.97687 * 13 12 11 39 39 H 1.08994 * 109.47501 * 149.98092 * 13 12 11 40 40 H 0.96997 * 119.99345 * 0.02562 * 16 14 13 41 41 H 1.09003 * 109.47029 * 299.99503 * 17 16 14 42 42 H 1.08999 * 109.47322 * 59.99671 * 17 16 14 43 43 H 0.97002 * 119.99886 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.58031 * 103.19515 * 29 7 6 45 45 H 1.09001 * 109.58295 * 223.59862 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0427 -0.7261 -1.2475 5 6 3.5501 -0.4993 -1.3746 6 6 4.2121 -0.8401 -0.0457 7 6 3.5419 -0.9376 1.1049 8 16 4.6149 -1.3430 2.4340 9 6 6.0225 -1.3826 1.3839 10 7 7.3208 -1.6395 1.6574 11 6 8.2298 -1.6201 0.7286 12 7 7.9273 -1.3403 -0.5654 13 6 8.9880 -1.3302 -1.5758 14 6 9.5733 0.0549 -1.6759 15 8 9.1460 0.9460 -0.9727 16 7 10.5707 0.3038 -2.5474 17 6 11.1400 1.6501 -2.6442 18 6 12.2302 1.6609 -3.6846 19 1 12.4749 0.7554 -4.2198 20 6 12.9153 2.8269 -3.9532 21 7 12.6170 3.9298 -3.3017 22 14 14.2671 2.8402 -5.2422 23 1 14.4075 1.4821 -5.8263 24 1 13.9194 3.8071 -6.3143 25 1 15.5497 3.2416 -4.6104 26 6 6.6565 -1.0725 -0.9250 27 8 6.3782 -0.8202 -2.0846 28 6 5.6418 -1.0854 0.0831 29 6 2.0445 -0.7266 1.2450 30 1 -0.3633 -1.0277 0.0036 31 1 -0.3632 0.5170 0.8882 32 1 -0.3633 0.5106 -0.8917 33 1 1.5393 -0.3329 -2.1307 34 1 1.8411 -1.7936 -1.1579 35 1 3.7430 0.5447 -1.6216 36 1 3.9532 -1.1406 -2.1584 37 1 9.2551 -1.8321 0.9934 38 1 9.7689 -2.0348 -1.2899 39 1 8.5730 -1.6198 -2.5412 40 1 10.9116 -0.4086 -3.1105 41 1 10.3591 2.3551 -2.9295 42 1 11.5555 1.9392 -1.6789 43 1 13.0988 4.7502 -3.4909 44 1 1.5466 -1.6919 1.3369 45 1 1.8418 -0.1231 2.1298 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031627511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:43 Heat of formation + Delta-G solvation = -34.039716 kcal Electronic energy + Delta-G solvation = -29295.401858 eV Core-core repulsion = 25210.628068 eV Total energy + Delta-G solvation = -4084.773790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82859 -39.28524 -38.65278 -37.62214 -35.79508 -34.34920 -33.71930 -32.45433 -31.21522 -30.26997 -29.23145 -26.96719 -26.84028 -24.70506 -24.01690 -23.03856 -22.47974 -21.35991 -20.09183 -19.14644 -18.58771 -17.90372 -17.62053 -17.11448 -16.40828 -16.08529 -15.47712 -15.18736 -14.93335 -14.88753 -14.68247 -14.48736 -14.26984 -14.07605 -13.80996 -13.59940 -13.26771 -13.04528 -12.97701 -12.88253 -12.67895 -12.35997 -12.11434 -12.03944 -11.75261 -11.66486 -11.46522 -11.06598 -11.02989 -10.96293 -10.84026 -10.48691 -10.40068 -10.16899 -10.15297 -10.04222 -9.46803 -9.22432 -8.83254 -8.59981 -8.05842 -8.01578 -6.23110 -4.30858 0.16244 0.97934 1.58072 1.71080 1.96229 2.26119 3.04425 3.19719 3.26756 3.29544 3.41123 3.89977 3.96643 4.15146 4.29696 4.46347 4.48783 4.51588 4.61428 4.68181 4.85861 5.00940 5.08479 5.13285 5.15885 5.17878 5.25841 5.27018 5.30411 5.35622 5.42691 5.60922 5.70419 5.77645 5.87211 5.88017 6.00299 6.05592 6.14161 6.30292 6.46790 7.17246 7.23147 7.40941 7.49243 7.55379 7.75161 7.87925 8.41970 8.64495 8.88709 9.35729 10.87024 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.002129 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.695952 B =13147.835570 C =14067.571685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.077 0.923 4 C -0.115 4.115 5 C -0.058 4.058 6 C -0.028 4.028 7 C -0.207 4.207 8 S 0.181 5.819 9 C 0.081 3.919 10 N -0.509 5.509 11 C 0.400 3.600 12 N -0.514 5.514 13 C 0.070 3.930 14 C 0.485 3.515 15 O -0.543 6.543 16 N -0.703 5.703 17 C 0.250 3.750 18 C -0.545 4.545 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.563 3.437 27 O -0.515 6.515 28 C -0.226 4.226 29 C -0.034 4.034 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.393 0.607 41 H 0.028 0.972 42 H 0.029 0.971 43 H 0.266 0.734 44 H 0.080 0.920 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.503 -15.588 9.390 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.097 4.097 6 C -0.039 4.039 7 C -0.324 4.324 8 S 0.448 5.552 9 C -0.151 4.151 10 N -0.231 5.231 11 C 0.110 3.890 12 N -0.233 5.233 13 C -0.056 4.056 14 C 0.267 3.733 15 O -0.421 6.421 16 N -0.352 5.352 17 C 0.130 3.870 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C 0.357 3.643 27 O -0.390 6.390 28 C -0.243 4.243 29 C -0.074 4.074 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.227 0.773 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.226 0.774 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.165 -14.947 11.567 27.638 hybrid contribution 1.368 0.300 -3.062 3.367 sum -18.797 -14.647 8.505 25.302 Atomic orbital electron populations 1.21818 0.94541 1.01947 1.01994 1.21193 0.95586 1.00069 0.94227 0.90469 1.21668 0.95065 1.00779 0.97711 1.20614 0.93681 1.02808 0.92636 1.19979 0.89269 0.98669 0.95963 1.24362 1.00033 1.12601 0.95374 1.83837 0.92886 1.70471 1.08025 1.23659 0.96353 0.99750 0.95292 1.67979 0.98805 1.24864 1.31481 1.24923 0.99776 0.86191 0.78066 1.46164 1.09651 1.57651 1.09828 1.21947 0.90435 0.98480 0.94731 1.20444 0.81336 0.89517 0.82015 1.90735 1.60881 1.46247 1.44281 1.46403 1.35007 1.15454 1.38309 1.19167 0.93316 0.76978 0.97545 1.21230 1.18748 0.96461 1.21891 0.91692 1.24968 0.97432 0.95177 0.96485 1.69986 1.41010 1.00335 1.40804 0.86333 0.81199 0.78249 0.80964 1.19583 1.20750 1.20766 1.16626 0.81124 0.77682 0.88839 1.90900 1.80877 1.48065 1.19202 1.20656 0.95188 1.15176 0.93302 1.20380 0.86945 1.01143 0.98885 0.92537 0.92534 0.92280 0.91046 0.91608 0.90030 0.89465 0.77304 0.85767 0.85419 0.77382 0.95405 0.95322 0.92404 0.90133 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 2 C -0.09 -0.72 2.71 -90.50 -0.25 -0.97 16 3 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 4 C -0.11 -1.02 5.21 -26.66 -0.14 -1.15 16 5 C -0.06 -0.71 5.38 -27.09 -0.15 -0.86 16 6 C -0.03 -0.38 5.93 -102.52 -0.61 -0.98 16 7 C -0.21 -2.34 6.29 -35.38 -0.22 -2.56 16 8 S 0.18 2.05 23.19 -107.50 -2.49 -0.45 16 9 C 0.08 1.17 7.68 -15.90 -0.12 1.04 16 10 N -0.51 -6.95 10.43 -12.73 -0.13 -7.08 16 11 C 0.40 4.78 11.48 -90.11 -1.03 3.74 16 12 N -0.51 -7.24 2.08 -121.69 -0.25 -7.49 16 13 C 0.07 0.88 5.84 -5.19 -0.03 0.85 16 14 C 0.48 9.00 7.90 -10.98 -0.09 8.91 16 15 O -0.54 -12.80 16.43 5.55 0.09 -12.71 16 16 N -0.70 -13.75 5.55 -61.48 -0.34 -14.09 16 17 C 0.25 6.44 5.43 -5.20 -0.03 6.41 16 18 C -0.55 -14.36 9.28 -34.44 -0.32 -14.68 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.88 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.56 9.49 7.51 -14.41 -0.11 9.38 16 27 O -0.51 -9.81 15.09 5.02 0.08 -9.74 16 28 C -0.23 -3.52 6.05 -104.90 -0.64 -4.15 16 29 C -0.03 -0.28 5.55 -27.28 -0.15 -0.43 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.17 7.33 -51.93 -0.38 0.78 16 37 H 0.21 1.50 8.02 -52.49 -0.42 1.08 16 38 H 0.12 0.89 8.01 -51.93 -0.42 0.47 16 39 H 0.13 1.52 7.43 -51.93 -0.39 1.13 16 40 H 0.39 6.28 8.32 -40.82 -0.34 5.94 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -36.38 388.24 -11.24 -47.62 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.12 Total: 1.99 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.63 Total: 5.65 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.01 Total: -53.69 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.38 -11.24 -47.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031627511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.584 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds