Wall clock time and date at job start Tue Mar 31 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.66015 * 2 1 4 4 C 1.53174 * 109.57222 * 120.30114 * 2 1 3 5 5 C 1.52928 * 109.16187 * 190.33478 * 4 2 1 6 6 C 1.52343 * 108.93696 * 308.98567 * 5 4 2 7 7 C 1.33949 * 123.14187 * 17.35159 * 6 5 4 8 8 S 1.75823 * 111.37236 * 179.97438 * 7 6 5 9 9 C 1.74605 * 92.34600 * 0.02562 * 8 7 6 10 10 N 1.35164 * 128.90179 * 179.97438 * 9 8 7 11 11 C 1.30856 * 118.04250 * 179.97438 * 10 9 8 12 12 N 1.35477 * 123.75589 * 0.02562 * 11 10 9 13 13 C 1.46500 * 118.96044 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46661 * 270.01509 * 13 12 11 15 15 O 1.21281 * 120.00504 * 0.02562 * 14 13 12 16 16 N 1.34784 * 119.99587 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99919 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47206 * 179.97438 * 17 16 14 19 19 H 1.07992 * 119.99710 * 0.02562 * 18 17 16 20 20 C 1.37874 * 119.99714 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00521 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99687 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47100 * 59.99962 * 22 20 18 24 24 H 1.48501 * 109.47158 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47177 * 299.99857 * 22 20 18 26 26 C 1.35542 * 122.07201 * 0.02562 * 12 11 10 27 27 O 1.21889 * 122.26367 * 180.02562 * 26 12 11 28 28 C 1.39626 * 109.68226 * 359.97438 * 9 8 7 29 29 C 1.51777 * 124.35979 * 359.95118 * 7 6 5 30 30 H 1.09006 * 109.46726 * 299.69437 * 1 2 3 31 31 H 1.08994 * 109.47091 * 59.69748 * 1 2 3 32 32 H 1.08999 * 109.46974 * 179.70046 * 1 2 3 33 33 H 1.09002 * 109.53338 * 70.40993 * 4 2 1 34 34 H 1.09002 * 109.53059 * 310.26018 * 4 2 1 35 35 H 1.09003 * 109.55999 * 68.82559 * 5 4 2 36 36 H 1.09007 * 109.55642 * 189.14749 * 5 4 2 37 37 H 1.07996 * 118.12112 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.47471 * 30.01701 * 13 12 11 39 39 H 1.09007 * 109.47152 * 150.01939 * 13 12 11 40 40 H 0.96992 * 120.00199 * 0.02562 * 16 14 13 41 41 H 1.09000 * 109.47095 * 299.99973 * 17 16 14 42 42 H 1.09007 * 109.46893 * 59.99823 * 17 16 14 43 43 H 0.96998 * 120.00235 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.57096 * 136.42884 * 29 7 6 45 45 H 1.09000 * 109.56334 * 256.66251 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8967 1.0265 0.0000 4 6 2.0431 -0.7282 1.2461 5 6 3.5503 -0.5029 1.3741 6 6 4.2158 -0.8448 0.0471 7 6 3.5420 -0.9418 -1.1065 8 16 4.6119 -1.3489 -2.4411 9 6 6.0130 -1.3886 -1.4000 10 7 7.3000 -1.6512 -1.7185 11 6 8.1894 -1.6229 -0.7591 12 7 7.8935 -1.3462 0.5337 13 6 8.9733 -1.3436 1.5237 14 6 9.1225 -2.7247 2.1079 15 8 8.3985 -3.6229 1.7338 16 7 10.0607 -2.9617 3.0462 17 6 10.2061 -4.3044 3.6137 18 6 11.3169 -4.3017 4.6322 19 1 11.8598 -3.3908 4.8365 20 6 11.6399 -5.4621 5.3030 21 7 10.9784 -6.5713 5.0545 22 14 13.0163 -5.4586 6.5660 23 1 12.6914 -4.4964 7.6494 24 1 13.1638 -6.8197 7.1412 25 1 14.2874 -5.0567 5.9118 26 6 6.6296 -1.0729 0.9402 27 8 6.3595 -0.8231 2.1022 28 6 5.6331 -1.0953 -0.0888 29 6 2.0458 -0.7283 -1.2452 30 1 -0.3633 0.5091 0.8928 31 1 -0.3633 0.5185 -0.8872 32 1 -0.3633 -1.0276 -0.0054 33 1 1.8407 -1.7953 1.1539 34 1 1.5397 -0.3368 2.1301 35 1 3.7435 0.5411 1.6211 36 1 3.9498 -1.1452 2.1590 37 1 9.2182 -1.8321 -1.0123 38 1 9.9064 -1.0497 1.0429 39 1 8.7358 -0.6365 2.3186 40 1 10.6395 -2.2433 3.3456 41 1 9.2730 -4.5989 4.0940 42 1 10.4444 -5.0111 2.8187 43 1 11.2054 -7.3876 5.5267 44 1 1.8435 -0.1251 -2.1302 45 1 1.5466 -1.6927 -1.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031627513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:46 Heat of formation + Delta-G solvation = -61.993351 kcal Electronic energy + Delta-G solvation = -29312.358543 eV Core-core repulsion = 25226.372593 eV Total energy + Delta-G solvation = -4085.985950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.85498 -40.58509 -39.72097 -38.84103 -36.80395 -36.17331 -34.78309 -34.41457 -32.02801 -31.16291 -30.61522 -28.67129 -27.59974 -25.90675 -24.96099 -24.49469 -23.78757 -22.16248 -21.65684 -20.04207 -19.59368 -19.25612 -18.96359 -18.12856 -17.91397 -17.34529 -16.79795 -16.75333 -16.41658 -16.17151 -15.80013 -15.56626 -15.22492 -15.03124 -14.78014 -14.64699 -14.51900 -14.29643 -14.22106 -14.04222 -13.82590 -13.72883 -13.24603 -12.99234 -12.97312 -12.83472 -12.68576 -12.59632 -12.36674 -12.25810 -11.90491 -11.56729 -11.54465 -11.35159 -11.29243 -11.26365 -11.20070 -10.81973 -10.68251 -9.94220 -9.59756 -8.97740 -8.30906 -6.47990 -0.85921 0.08846 0.42493 0.75397 0.95548 1.18982 1.43078 1.46872 1.54981 1.55407 2.17075 2.35519 2.57493 3.04302 3.10889 3.28309 3.54880 3.59300 3.69858 3.81805 3.84862 3.92281 4.01791 4.12606 4.17358 4.24658 4.40918 4.51562 4.64166 4.76373 4.78114 4.86023 4.98027 5.00544 5.02009 5.08192 5.13872 5.18624 5.19530 5.27098 5.38821 5.41339 5.47993 5.51809 5.61724 5.80759 6.37907 6.52593 6.62137 6.76210 7.19948 7.36580 8.80942 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.002130 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.475058 B =13140.212385 C =14064.529522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 H 0.075 0.925 4 C -0.112 4.112 5 C -0.053 4.053 6 C -0.060 4.060 7 C -0.200 4.200 8 S 0.233 5.767 9 C 0.045 3.955 10 N -0.499 5.499 11 C 0.389 3.611 12 N -0.515 5.515 13 C 0.080 3.920 14 C 0.482 3.518 15 O -0.599 6.599 16 N -0.696 5.696 17 C 0.268 3.732 18 C -0.555 4.555 19 H 0.089 0.911 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.985 3.015 23 H -0.264 1.264 24 H -0.288 1.288 25 H -0.258 1.258 26 C 0.556 3.444 27 O -0.545 6.545 28 C -0.264 4.264 29 C -0.038 4.038 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.253 0.747 38 H 0.192 0.808 39 H 0.139 0.861 40 H 0.415 0.585 41 H -0.021 1.021 42 H -0.007 1.007 43 H 0.268 0.732 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.842 18.868 -16.041 28.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.150 4.150 5 C -0.092 4.092 6 C -0.070 4.070 7 C -0.317 4.317 8 S 0.501 5.499 9 C -0.188 4.188 10 N -0.222 5.222 11 C 0.101 3.899 12 N -0.233 5.233 13 C -0.045 4.045 14 C 0.268 3.732 15 O -0.480 6.480 16 N -0.346 5.346 17 C 0.145 3.855 18 C -0.593 4.593 19 H 0.107 0.893 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.808 3.192 23 H -0.188 1.188 24 H -0.214 1.214 25 H -0.182 1.182 26 C 0.353 3.647 27 O -0.423 6.423 28 C -0.281 4.281 29 C -0.077 4.077 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.269 0.731 38 H 0.209 0.791 39 H 0.157 0.843 40 H 0.251 0.749 41 H -0.003 1.003 42 H 0.011 0.989 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.759 17.805 -17.974 29.290 hybrid contribution 1.142 -0.323 3.317 3.523 sum -13.617 17.482 -14.657 26.568 Atomic orbital electron populations 1.21783 0.92740 1.02537 1.02811 1.21173 0.96883 0.99324 0.92925 0.90618 1.21667 0.92891 1.01049 0.99374 1.20509 0.95727 1.01428 0.91549 1.20095 0.89301 1.00637 0.96976 1.25016 1.01546 1.10273 0.94843 1.83475 0.91253 1.68367 1.06836 1.24288 0.98533 1.00151 0.95825 1.69782 0.98206 1.24729 1.29449 1.25942 1.02262 0.84185 0.77523 1.46270 1.09829 1.57068 1.10120 1.22162 0.93174 0.94370 0.94843 1.21502 0.80136 0.91361 0.80196 1.90716 1.46061 1.48367 1.62894 1.46059 1.35438 1.13740 1.39366 1.18543 0.95119 0.79539 0.92283 1.21596 1.17876 0.97339 1.22506 0.89284 1.26097 0.99632 0.94637 0.99415 1.70138 1.42445 1.01243 1.43261 0.85196 0.78491 0.77283 0.78191 1.18826 1.21403 1.18196 1.17173 0.82134 0.77162 0.88270 1.90869 1.80896 1.51010 1.19542 1.20845 0.96329 1.17532 0.93419 1.20607 0.84746 1.02355 0.99966 0.91906 0.91183 0.92223 0.92091 0.89907 0.90485 0.92781 0.73145 0.79054 0.84275 0.74860 1.00285 0.98889 0.92295 0.88103 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 71.98 0.66 -0.67 16 2 C -0.08 -1.14 2.73 -10.67 -0.03 -1.17 16 3 H 0.08 1.07 8.10 -2.38 -0.02 1.05 16 4 C -0.11 -2.08 5.21 30.63 0.16 -1.92 16 5 C -0.05 -1.38 5.34 30.35 0.16 -1.22 16 6 C -0.06 -1.67 5.92 -18.70 -0.11 -1.78 16 7 C -0.20 -4.37 6.31 25.05 0.16 -4.21 16 8 S 0.23 5.00 23.17 -56.49 -1.31 3.69 16 9 C 0.05 1.28 7.50 84.52 0.63 1.92 16 10 N -0.50 -13.10 10.70 -193.99 -2.08 -15.18 16 11 C 0.39 8.72 11.33 180.02 2.04 10.76 16 12 N -0.52 -14.10 2.09 -655.22 -1.37 -15.46 16 13 C 0.08 1.82 5.80 85.63 0.50 2.31 16 14 C 0.48 17.90 7.89 87.66 0.69 18.59 16 15 O -0.60 -29.31 16.43 -3.03 -0.05 -29.36 16 16 N -0.70 -27.17 5.55 -466.77 -2.59 -29.76 16 17 C 0.27 14.36 5.43 85.63 0.46 14.82 16 18 C -0.56 -29.36 9.28 25.60 0.24 -29.12 16 19 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 22 Si 0.99 41.64 29.54 68.60 2.03 43.66 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 C 0.56 19.28 7.59 85.38 0.65 19.93 16 27 O -0.54 -21.76 15.14 -4.96 -0.08 -21.83 16 28 C -0.26 -8.44 6.01 -20.07 -0.12 -8.56 16 29 C -0.04 -0.53 5.54 30.26 0.17 -0.37 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 34 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.75 7.29 -2.38 -0.02 1.74 16 37 H 0.25 2.83 7.93 -2.91 -0.02 2.80 16 38 H 0.19 1.77 7.94 -2.39 -0.02 1.75 16 39 H 0.14 3.01 7.45 -2.38 -0.02 2.99 16 40 H 0.41 12.47 8.32 -92.71 -0.77 11.70 16 41 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 42 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.16 8.12 -2.39 -0.02 1.14 16 Total: -1.00 -86.00 388.01 1.83 -84.17 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.27 Total: 16.01 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 6.72 Total: 19.88 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -5.75 Total: -116.23 kcal Atomic # 8 Polarization: -51.07 SS G_CDS: -0.12 Total: -51.19 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.31 Total: 3.69 kcal Total: -86.00 1.83 -84.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031627513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.177 kcal (2) G-P(sol) polarization free energy of solvation -86.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds