Wall clock time and date at job start Tue Mar 31 2020 05:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.47308 * 2 1 4 4 C 1.35898 * 117.00007 * 179.97438 * 3 2 1 5 5 C 1.38754 * 120.05576 * 359.73297 * 4 3 2 6 6 C 1.38124 * 119.94092 * 179.73918 * 5 4 3 7 7 C 1.38289 * 120.05565 * 0.50892 * 6 5 4 8 8 S 1.76207 * 119.94388 * 179.74485 * 7 6 5 9 9 O 1.42098 * 106.40392 * 18.03528 * 8 7 6 10 10 O 1.42101 * 106.40328 * 150.95697 * 8 7 6 11 11 N 1.65600 * 107.21601 * 264.49650 * 8 7 6 12 12 C 1.38859 * 120.00174 * 62.86286 * 11 8 7 13 13 C 1.39561 * 119.84162 * 253.79511 * 12 11 8 14 14 C 1.36340 * 120.16152 * 179.71542 * 13 12 11 15 15 C 1.40889 * 119.83406 * 0.55211 * 14 13 12 16 16 C 1.41140 * 120.15590 * 179.69653 * 15 14 13 17 17 H 1.07994 * 120.00413 * 205.15012 * 16 15 14 18 18 C 1.39868 * 119.99777 * 25.15069 * 16 15 14 19 19 N 1.30906 * 119.99910 * 15.23210 * 18 16 15 20 20 Si 1.86797 * 119.99958 * 195.22765 * 18 16 15 21 21 H 1.48496 * 109.47137 * 90.00124 * 20 18 16 22 22 H 1.48498 * 109.47588 * 210.00243 * 20 18 16 23 23 H 1.48504 * 109.47208 * 330.00565 * 20 18 16 24 24 C 1.40882 * 119.68734 * 359.72191 * 15 14 13 25 25 C 1.36338 * 119.84122 * 0.02562 * 24 15 14 26 26 C 1.38240 * 120.11530 * 359.76821 * 7 6 5 27 27 C 1.38175 * 120.05183 * 359.97408 * 26 7 6 28 28 C 1.50697 * 120.02827 * 179.97438 * 27 26 7 29 29 H 1.08997 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46693 * 299.99702 * 1 2 3 31 31 H 1.08996 * 109.46754 * 59.99629 * 1 2 3 32 32 H 1.09001 * 109.47408 * 240.00494 * 2 1 3 33 33 H 1.08997 * 109.47664 * 120.00387 * 2 1 3 34 34 H 1.07996 * 120.02968 * 359.97413 * 5 4 3 35 35 H 1.08002 * 119.97442 * 180.24885 * 6 5 4 36 36 H 0.96994 * 119.99965 * 242.85933 * 11 8 7 37 37 H 1.08003 * 119.92251 * 359.97438 * 13 12 11 38 38 H 1.07998 * 120.08505 * 180.27654 * 14 13 12 39 39 H 0.97001 * 119.99267 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.07796 * 179.97438 * 24 15 14 41 41 H 1.07995 * 119.92379 * 179.97438 * 25 24 15 42 42 H 1.07996 * 119.97635 * 180.02562 * 26 7 6 43 43 H 1.09000 * 109.46984 * 270.03013 * 28 27 26 44 44 H 1.09010 * 109.46683 * 30.02190 * 28 27 26 45 45 H 1.08999 * 109.47176 * 150.02367 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1999 0.4258 0.0067 6 6 5.5689 0.6094 0.0017 7 6 6.0962 1.8878 0.0014 8 16 7.8431 2.1187 0.0019 9 8 8.4109 0.8861 -0.4194 10 8 8.0850 3.3525 -0.6603 11 7 8.3086 2.3340 1.5765 12 6 8.1218 1.3151 2.5013 13 6 7.1115 1.4224 3.4581 14 6 6.9186 0.4233 4.3656 15 6 7.7496 -0.7141 4.3430 16 6 7.5600 -1.7495 5.2833 17 1 8.3837 -2.3957 5.5484 18 6 6.3053 -1.9387 5.8716 19 7 5.2462 -1.3722 5.3510 20 14 6.1409 -2.9999 7.4001 21 1 6.3047 -2.1543 8.6097 22 1 4.7993 -3.6363 7.4190 23 1 7.1881 -4.0527 7.3868 24 6 8.7711 -0.8129 3.3778 25 6 8.9492 0.1915 2.4733 26 6 5.2553 2.9850 0.0011 27 6 3.8851 2.8066 0.0006 28 6 2.9688 4.0030 0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.7886 -0.5728 0.0114 35 1 6.2281 -0.2461 0.0024 36 1 8.7118 3.1718 1.8528 37 1 6.4782 2.2971 3.4773 38 1 6.1335 0.5056 5.1027 39 1 4.3760 -1.5038 5.7589 40 1 9.4121 -1.6819 3.3550 41 1 9.7321 0.1174 1.7331 42 1 5.6695 3.9824 0.0004 43 1 2.7481 4.2914 1.0286 44 1 3.4546 4.8328 -0.5129 45 1 2.0413 3.7505 -0.5130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032591135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:36 Heat of formation + Delta-G solvation = -77.156863 kcal Electronic energy + Delta-G solvation = -30206.866562 eV Core-core repulsion = 26087.930321 eV Total energy + Delta-G solvation = -4118.936241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.118 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.30988 -38.02402 -37.62078 -36.71104 -35.38904 -34.79484 -33.01883 -32.84920 -31.79411 -29.97088 -29.61258 -28.76646 -26.82334 -24.78767 -24.28363 -22.36501 -21.44792 -21.17418 -20.81126 -18.94168 -18.20584 -17.50400 -17.22812 -17.06635 -16.41154 -16.28499 -16.12351 -15.39620 -14.66567 -14.40717 -14.08113 -14.01371 -13.94693 -13.65832 -13.14457 -13.08260 -12.86358 -12.85017 -12.68860 -12.38201 -12.15566 -12.13303 -11.95593 -11.83820 -11.68277 -11.65626 -11.53780 -11.37194 -11.26100 -10.96239 -10.87135 -10.83890 -10.82137 -10.54189 -9.95300 -9.79689 -9.32906 -8.94900 -8.83482 -8.36087 -7.67550 -7.38861 -6.92594 -4.51454 0.81837 1.13502 1.38838 2.57000 2.97352 3.00994 3.01290 3.02333 3.06188 3.40643 3.71566 3.79818 4.20924 4.44236 4.62336 4.73629 4.75284 4.79611 5.02895 5.06979 5.19426 5.28847 5.38979 5.51796 5.53492 5.58266 5.64444 5.66868 5.80654 5.86690 6.05343 6.18988 6.22553 6.27657 6.29516 6.35246 6.37147 6.73634 6.86415 6.91376 7.06381 7.20023 7.28174 7.36235 7.48877 7.89161 7.94543 8.01329 8.14283 8.47517 8.71613 8.82364 9.99186 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.004245 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.318277 B = 6594.170920 C = 9453.492411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.311 6.311 4 C 0.179 3.821 5 C -0.222 4.222 6 C 0.031 3.969 7 C -0.695 4.695 8 S 2.680 3.320 9 O -0.959 6.959 10 O -0.983 6.983 11 N -1.032 6.032 12 C -0.033 4.033 13 C -0.083 4.083 14 C -0.165 4.165 15 C 0.118 3.882 16 C -0.448 4.448 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.785 5.785 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.223 4.223 25 C -0.064 4.064 26 C 0.013 3.987 27 C -0.144 4.144 28 C -0.102 4.102 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.406 0.594 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.282 0.718 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 4.686 -6.940 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.224 6.224 4 C 0.133 3.867 5 C -0.241 4.241 6 C 0.012 3.988 7 C -0.782 4.782 8 S 2.774 3.226 9 O -0.949 6.949 10 O -0.973 6.973 11 N -0.786 5.786 12 C -0.129 4.129 13 C -0.104 4.104 14 C -0.185 4.185 15 C 0.115 3.885 16 C -0.477 4.477 17 H 0.100 0.900 18 C -0.145 4.145 19 N -0.409 5.409 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.244 4.244 25 C -0.085 4.085 26 C -0.006 4.006 27 C -0.146 4.146 28 C -0.158 4.158 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.038 4.718 -7.782 12.142 hybrid contribution -0.739 -0.557 1.188 1.506 sum -8.777 4.162 -6.594 11.740 Atomic orbital electron populations 1.21764 0.92611 1.02940 1.03399 1.22893 0.95926 0.81716 1.02084 1.86047 1.18936 1.29753 1.87631 1.18999 0.82172 0.93791 0.91781 1.21312 0.94361 0.98234 1.10234 1.20727 0.94926 0.95759 0.87405 1.30764 1.26839 0.99531 1.21061 1.02628 0.73730 0.73281 0.72999 1.93547 1.75408 1.45562 1.80355 1.93515 1.85229 1.45293 1.73281 1.52199 1.75527 1.23900 1.26939 1.16604 1.04144 0.92350 0.99783 1.20630 0.95952 0.98045 0.95803 1.21011 1.03135 0.93239 1.01128 1.17748 0.89774 0.91445 0.89513 1.19691 0.95996 1.12806 1.19176 0.90024 1.25984 0.95369 0.95568 0.97625 1.69851 0.99776 1.35585 1.35712 0.86242 0.78547 0.80270 0.81341 1.19133 1.20222 1.18441 1.20670 1.04790 0.99617 0.99296 1.20616 0.96643 0.93751 0.97519 1.20530 0.91668 0.97748 0.90669 1.19252 0.94169 0.92703 1.08459 1.20585 0.98356 0.94481 1.02427 0.90267 0.91422 0.91669 0.91807 0.91243 0.84738 0.83835 0.75699 0.89142 0.85968 0.90676 0.88412 0.88174 0.84229 0.91308 0.91545 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.05 0.51 5.46 37.16 0.20 0.72 16 3 O -0.31 -4.14 9.18 -19.42 -0.18 -4.32 16 4 C 0.18 2.70 6.66 -39.22 -0.26 2.44 16 5 C -0.22 -3.46 9.04 -39.43 -0.36 -3.82 16 6 C 0.03 0.54 9.52 -39.60 -0.38 0.16 16 7 C -0.70 -11.89 5.85 -39.56 -0.23 -12.12 16 8 S 2.68 47.80 5.70 -107.50 -0.61 47.19 16 9 O -0.96 -19.56 16.08 -57.17 -0.92 -20.48 16 10 O -0.98 -18.25 17.43 -57.17 -1.00 -19.25 16 11 N -1.03 -18.04 5.65 32.51 0.18 -17.86 16 12 C -0.03 -0.68 5.80 -83.69 -0.49 -1.16 16 13 C -0.08 -1.80 9.90 -39.77 -0.39 -2.19 16 14 C -0.16 -3.98 8.63 -39.26 -0.34 -4.32 16 15 C 0.12 2.95 5.58 -106.79 -0.60 2.35 16 16 C -0.45 -11.05 9.04 -37.87 -0.34 -11.39 16 17 H 0.08 1.94 7.89 -52.49 -0.41 1.52 16 18 C 0.07 1.71 5.19 -17.34 -0.09 1.62 16 19 N -0.78 -18.81 10.83 55.54 0.60 -18.20 16 20 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 24 C -0.22 -5.21 9.74 -39.27 -0.38 -5.59 16 25 C -0.06 -1.41 9.19 -39.77 -0.37 -1.77 16 26 C 0.01 0.20 9.17 -39.60 -0.36 -0.16 16 27 C -0.14 -2.12 5.89 -104.47 -0.62 -2.73 16 28 C -0.10 -1.18 9.79 36.00 0.35 -0.82 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 33 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 34 H 0.13 1.80 6.30 -52.49 -0.33 1.47 16 35 H 0.14 2.50 7.50 -52.49 -0.39 2.11 16 36 H 0.41 5.98 8.95 -34.47 -0.31 5.67 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.12 3.05 6.09 -52.49 -0.32 2.73 16 39 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 40 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 41 H 0.10 2.09 7.84 -52.49 -0.41 1.68 16 42 H 0.14 1.86 7.74 -52.49 -0.41 1.46 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.65 8.09 -51.92 -0.42 0.23 16 45 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 LS Contribution 390.75 15.07 5.89 5.89 Total: -1.00 -29.71 390.75 -11.19 -40.90 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.86 Total: 13.33 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: -4.26 Total: -39.63 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.79 Total: -36.06 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -2.09 Total: -44.04 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: 47.80 SS G_CDS: -0.61 Total: 47.19 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.71 -11.19 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032591135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.258 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds