Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47220 * 2 1 4 4 C 1.52993 * 109.47626 * 120.00119 * 2 1 3 5 5 C 1.52994 * 109.47559 * 174.99835 * 4 2 1 6 6 N 1.46503 * 109.47306 * 180.02562 * 5 4 2 7 7 C 1.34776 * 119.99782 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00391 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99816 * 180.02562 * 7 6 5 10 10 S 1.80995 * 109.47085 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99855 * 179.97438 * 10 9 7 12 12 N 1.31043 * 125.07930 * 0.02562 * 11 10 9 13 13 C 1.35869 * 109.62253 * 179.97438 * 12 11 10 14 14 C 1.39735 * 133.37668 * 180.02562 * 13 12 11 15 15 C 1.37677 * 119.77712 * 179.97438 * 14 13 12 16 16 C 1.38709 * 120.49748 * 359.97438 * 15 14 13 17 17 C 1.37968 * 120.43335 * 0.04811 * 16 15 14 18 18 C 1.38656 * 119.85610 * 359.66258 * 17 16 15 19 19 N 1.36637 * 125.07335 * 179.97438 * 11 10 9 20 20 C 1.46491 * 126.38963 * 0.02562 * 19 11 10 21 21 C 1.50702 * 109.46957 * 90.02307 * 20 19 11 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99985 * 180.27663 * 23 21 20 25 25 Si 1.86800 * 119.99777 * 0.28166 * 23 21 20 26 26 H 1.48498 * 109.47109 * 89.99834 * 25 23 21 27 27 H 1.48507 * 109.46754 * 209.99574 * 25 23 21 28 28 H 1.48498 * 109.47278 * 329.99405 * 25 23 21 29 29 H 1.09007 * 109.46977 * 300.00147 * 1 2 3 30 30 H 1.09004 * 109.47102 * 59.99593 * 1 2 3 31 31 H 1.08997 * 109.47167 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46555 * 240.00364 * 2 1 3 33 33 H 1.08997 * 109.47251 * 60.00172 * 3 2 1 34 34 H 1.08997 * 109.47174 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46936 * 300.00434 * 3 2 1 36 36 H 1.09007 * 109.46912 * 54.99311 * 4 2 1 37 37 H 1.09007 * 109.47147 * 295.00021 * 4 2 1 38 38 H 1.08997 * 109.47242 * 59.99788 * 5 4 2 39 39 H 1.09007 * 109.47044 * 300.00250 * 5 4 2 40 40 H 0.97002 * 120.00075 * 0.02562 * 6 5 4 41 41 H 1.08997 * 109.47430 * 59.99552 * 9 7 6 42 42 H 1.09004 * 109.46450 * 300.00032 * 9 7 6 43 43 H 1.07996 * 120.10714 * 359.95119 * 14 13 12 44 44 H 1.08001 * 119.75119 * 180.02562 * 15 14 13 45 45 H 1.08000 * 119.78015 * 180.02562 * 16 15 14 46 46 H 1.08002 * 120.07127 * 179.97438 * 17 16 15 47 47 H 1.09004 * 109.47166 * 330.02573 * 20 19 11 48 48 H 1.08994 * 109.47507 * 210.02280 * 20 19 11 49 49 H 0.96996 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 3.5649 -0.8310 1.1878 6 7 4.0532 -1.5222 2.3837 7 6 5.3741 -1.7347 2.5470 8 8 6.1583 -1.3542 1.7038 9 6 5.8764 -2.4462 3.7769 10 16 7.6802 -2.5760 3.7043 11 6 7.9872 -3.4222 5.2191 12 7 7.0661 -3.7970 6.0724 13 6 7.6496 -4.4220 7.1284 14 6 7.1482 -5.0057 8.2948 15 6 8.0139 -5.5764 9.2005 16 6 9.3807 -5.5769 8.9638 17 6 9.8916 -5.0042 7.8172 18 6 9.0340 -4.4303 6.8911 19 7 9.2213 -3.7864 5.6788 20 6 10.5031 -3.5463 5.0114 21 6 11.0598 -2.2184 5.4559 22 1 10.5138 -1.6139 6.1650 23 6 12.2695 -1.7779 4.9621 24 7 12.7580 -0.6215 5.3541 25 14 13.2144 -2.8237 3.7361 26 1 12.8016 -2.4628 2.3560 27 1 14.6705 -2.5805 3.8968 28 1 12.9222 -4.2589 3.9809 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6054 -1.7198 1.2951 37 1 1.7518 -0.1583 2.1369 38 1 3.9995 0.1675 1.1419 39 1 3.8532 -1.3940 0.3000 40 1 3.4259 -1.8275 3.0576 41 1 5.4414 -3.4446 3.8222 42 1 5.5883 -1.8837 4.6650 43 1 6.0851 -5.0089 8.4853 44 1 7.6259 -6.0278 10.1017 45 1 10.0493 -6.0281 9.6819 46 1 10.9568 -5.0075 7.6390 47 1 10.3539 -3.5347 3.9317 48 1 11.2032 -4.3397 5.2729 49 1 13.6088 -0.3115 5.0064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032957483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = -3.162628 kcal Electronic energy + Delta-G solvation = -28565.129691 eV Core-core repulsion = 24617.527927 eV Total energy + Delta-G solvation = -3947.601764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.85679 -40.84998 -38.13779 -37.98211 -36.00890 -35.39487 -34.33021 -31.91367 -31.51547 -30.33468 -29.58632 -29.27665 -28.01218 -24.97838 -24.65855 -24.09486 -22.96139 -22.00011 -21.54688 -20.75971 -19.32985 -18.87182 -18.13313 -17.96975 -17.55703 -17.07327 -17.00869 -16.63308 -16.14882 -15.95166 -15.80230 -15.15265 -15.07601 -14.97835 -14.85652 -14.79793 -14.56042 -14.28576 -14.01469 -13.93131 -13.61151 -13.47840 -13.05996 -12.88324 -12.78736 -12.68730 -12.64442 -12.43927 -12.42516 -12.20697 -11.89604 -11.86433 -11.64741 -11.59523 -11.50993 -11.20261 -11.14780 -11.06138 -10.93943 -10.22690 -9.99677 -9.01158 -8.47884 -8.45716 -6.56944 -0.07778 0.00202 0.65859 0.94363 1.28137 1.31278 1.38740 1.39206 1.64173 1.95478 2.08513 2.20308 2.85905 2.96361 3.40789 3.59823 3.81971 3.93230 3.98839 4.03417 4.05867 4.12954 4.19936 4.28882 4.30966 4.37449 4.46678 4.49844 4.55156 4.64918 4.76696 4.78335 4.82412 4.88844 4.96746 4.99953 5.08277 5.13560 5.13856 5.28452 5.32995 5.34688 5.46617 5.50863 5.55838 5.61274 5.67401 5.83011 5.98915 6.18609 6.34932 6.45381 6.68750 7.04819 7.06815 8.70635 Molecular weight = 361.16amu Principal moments of inertia in cm(-1) A = 0.009282 B = 0.002393 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3015.719709 B =11697.057784 C =14231.167293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.155 4.155 4 C -0.117 4.117 5 C 0.116 3.884 6 N -0.706 5.706 7 C 0.534 3.466 8 O -0.567 6.567 9 C -0.132 4.132 10 S 0.038 5.962 11 C 0.235 3.765 12 N -0.512 5.512 13 C 0.023 3.977 14 C -0.079 4.079 15 C -0.118 4.118 16 C -0.100 4.100 17 C -0.124 4.124 18 C 0.027 3.973 19 N -0.458 5.458 20 C 0.221 3.779 21 C -0.546 4.546 22 H 0.027 0.973 23 C 0.028 3.972 24 N -0.930 5.930 25 Si 0.939 3.061 26 H -0.260 1.260 27 H -0.270 1.270 28 H -0.242 1.242 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.420 0.580 41 H 0.144 0.856 42 H 0.135 0.865 43 H 0.148 0.852 44 H 0.170 0.830 45 H 0.162 0.838 46 H 0.116 0.884 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.440 -6.822 -3.582 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.212 4.212 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.359 5.359 7 C 0.319 3.681 8 O -0.447 6.447 9 C -0.284 4.284 10 S 0.268 5.732 11 C -0.138 4.138 12 N -0.239 5.239 13 C -0.098 4.098 14 C -0.100 4.100 15 C -0.138 4.138 16 C -0.120 4.120 17 C -0.146 4.146 18 C -0.084 4.084 19 N -0.146 5.146 20 C 0.101 3.899 21 C -0.584 4.584 22 H 0.045 0.955 23 C -0.173 4.173 24 N -0.568 5.568 25 Si 0.760 3.240 26 H -0.185 1.185 27 H -0.195 1.195 28 H -0.165 1.165 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.258 0.742 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.166 0.834 44 H 0.188 0.812 45 H 0.179 0.821 46 H 0.134 0.866 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.730 -5.849 -5.251 24.051 hybrid contribution 0.892 -0.239 0.741 1.184 sum -21.838 -6.088 -4.511 23.115 Atomic orbital electron populations 1.21811 0.93945 1.02251 1.02185 1.21038 0.96597 0.96003 0.97626 1.21950 1.00756 0.96277 1.02213 1.21823 0.91673 1.02433 0.99549 1.21568 0.95732 0.96699 0.86761 1.45727 1.05904 1.59302 1.24951 1.19753 0.83444 0.78838 0.86112 1.90765 1.56319 1.52369 1.45204 1.23602 0.95447 1.07756 1.01553 1.86734 1.05789 1.68917 1.11732 1.25746 0.83528 1.02413 1.02124 1.70812 1.29229 1.20430 1.03400 1.19603 0.89646 1.03564 0.97012 1.20538 1.01228 0.97774 0.90416 1.21303 0.92431 1.00059 1.00025 1.21277 0.96606 0.98629 0.95499 1.20303 0.98605 1.01207 0.94439 1.19507 0.97492 1.02181 0.89205 1.45467 1.07183 1.44734 1.17250 1.19847 0.79349 0.97262 0.93480 1.21075 1.06220 1.03143 1.27980 0.95460 1.25729 0.97548 0.96149 0.97852 1.70009 1.20571 1.21357 1.44859 0.85849 0.78436 0.80264 0.79464 1.18509 1.19492 1.16508 0.92313 0.92394 0.92061 0.91122 0.92320 0.93392 0.92274 0.89714 0.90169 0.92266 0.92213 0.74186 0.83790 0.84716 0.83440 0.81230 0.82079 0.86611 0.93114 0.92573 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 71.98 0.66 -0.49 16 2 C -0.09 -0.94 2.92 -10.79 -0.03 -0.97 16 3 C -0.15 -1.81 8.95 71.98 0.64 -1.17 16 4 C -0.12 -1.13 4.80 30.59 0.15 -0.98 16 5 C 0.12 1.89 5.43 86.38 0.47 2.35 16 6 N -0.71 -12.23 5.56 -463.05 -2.57 -14.80 16 7 C 0.53 14.26 7.85 87.66 0.69 14.95 16 8 O -0.57 -20.55 15.86 -3.03 -0.05 -20.60 16 9 C -0.13 -3.56 5.64 71.24 0.40 -3.16 16 10 S 0.04 1.50 20.68 -56.49 -1.17 0.33 16 11 C 0.23 10.18 7.93 179.59 1.42 11.61 16 12 N -0.51 -20.59 10.57 -188.40 -1.99 -22.58 16 13 C 0.02 0.90 7.22 39.42 0.28 1.19 16 14 C -0.08 -2.34 10.10 22.50 0.23 -2.11 16 15 C -0.12 -2.84 10.01 22.25 0.22 -2.61 16 16 C -0.10 -2.71 10.03 22.32 0.22 -2.48 16 17 C -0.12 -4.57 10.04 22.31 0.22 -4.34 16 18 C 0.03 1.18 6.87 38.72 0.27 1.45 16 19 N -0.46 -21.52 2.82 -519.69 -1.46 -22.99 16 20 C 0.22 10.92 4.76 85.64 0.41 11.33 16 21 C -0.55 -31.91 9.94 25.60 0.25 -31.65 16 22 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 23 C 0.03 1.61 5.47 84.66 0.46 2.07 16 24 N -0.93 -57.45 13.96 21.45 0.30 -57.16 16 25 Si 0.94 42.39 27.47 68.60 1.88 44.27 16 26 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 27 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.68 6.57 -2.39 -0.02 0.66 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 37 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.06 1.16 6.57 -2.39 -0.02 1.14 16 39 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.42 4.33 8.47 -92.71 -0.79 3.54 16 41 H 0.14 3.23 8.14 -2.40 -0.02 3.21 16 42 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 44 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 46 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 47 H 0.05 2.43 7.11 -2.38 -0.02 2.42 16 48 H 0.06 2.63 7.19 -2.39 -0.02 2.62 16 49 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -79.23 418.88 2.03 -77.20 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.11 Total: 21.36 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 6.98 Total: -5.04 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -5.73 Total: -117.53 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -1.17 Total: 0.33 kcal Total: -79.23 2.03 -77.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032957483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.033 kcal (2) G-P(sol) polarization free energy of solvation -79.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds