Wall clock time and date at job start Tue Mar 31 2020 05:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.47248 * 2 1 4 4 O 1.21291 * 120.00038 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.40171 * 119.99815 * 185.27433 * 5 3 2 7 7 C 1.39176 * 119.89085 * 213.43801 * 6 5 3 8 8 C 1.37889 * 120.36962 * 179.97438 * 7 6 5 9 9 C 1.38946 * 120.14846 * 0.04377 * 8 7 6 10 10 N 1.39021 * 120.10875 * 179.97438 * 9 8 7 11 11 C 1.46956 * 110.99755 * 299.99722 * 10 9 8 12 12 C 1.53051 * 109.36325 * 183.18964 * 11 10 9 13 13 N 1.46958 * 109.36604 * 301.60106 * 12 11 10 14 14 C 1.46901 * 111.00175 * 183.18641 * 13 12 11 15 15 C 1.50698 * 109.47020 * 169.99657 * 14 13 12 16 16 H 1.08004 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99980 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99937 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99846 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46975 * 89.99929 * 19 17 15 21 21 H 1.48505 * 109.47111 * 209.99626 * 19 17 15 22 22 H 1.48491 * 109.47379 * 329.99823 * 19 17 15 23 23 C 1.46959 * 110.88009 * 59.31674 * 13 12 11 24 24 C 1.46955 * 110.99947 * 63.79936 * 10 9 8 25 25 C 1.40356 * 119.77934 * 0.23181 * 9 8 7 26 26 C 1.47303 * 120.18256 * 179.74882 * 25 9 8 27 27 O 1.21523 * 119.99495 * 359.97438 * 26 25 9 28 28 O 1.34764 * 120.00406 * 179.97438 * 26 25 9 29 29 C 1.38311 * 119.89460 * 33.41740 * 6 5 3 30 30 H 1.08996 * 109.46551 * 60.00130 * 1 2 3 31 31 H 1.08990 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46696 * 300.00647 * 1 2 3 33 33 H 1.08994 * 109.46954 * 239.99784 * 2 1 3 34 34 H 1.09005 * 109.46546 * 119.99701 * 2 1 3 35 35 H 0.96999 * 120.00055 * 5.27667 * 5 3 2 36 36 H 1.08004 * 119.81404 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.92828 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.48843 * 63.22881 * 11 10 9 39 39 H 1.08995 * 109.49359 * 303.15807 * 11 10 9 40 40 H 1.09000 * 109.49123 * 181.63382 * 12 11 10 41 41 H 1.09002 * 109.50752 * 61.57996 * 12 11 10 42 42 H 1.08996 * 109.47038 * 290.00294 * 14 13 12 43 43 H 1.09000 * 109.47031 * 50.00418 * 14 13 12 44 44 H 0.97005 * 120.00200 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.48425 * 60.64941 * 23 13 12 46 46 H 1.09001 * 109.48489 * 180.71217 * 23 13 12 47 47 H 1.09003 * 109.48966 * 296.77405 * 24 10 9 48 48 H 1.08997 * 109.49188 * 56.81915 * 24 10 9 49 49 H 0.96695 * 117.00242 * 179.97438 * 28 26 25 50 50 H 1.08007 * 120.07172 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3576 1.6670 0.0005 6 6 3.8257 2.9835 0.1121 7 6 4.9954 3.3614 -0.5406 8 6 5.4645 4.6540 -0.4380 9 6 4.7716 5.5898 0.3201 10 7 5.2456 6.8926 0.4234 11 6 6.5898 6.9184 1.0168 12 6 7.0420 8.3707 1.1862 13 7 7.0341 9.0394 -0.1224 14 6 7.5350 10.4160 -0.0132 15 6 7.7447 10.9851 -1.3927 16 1 7.5272 10.3844 -2.2635 17 6 8.2132 12.2731 -1.5432 18 7 8.3967 12.7696 -2.7471 19 14 8.5887 13.3123 -0.0371 20 1 10.0040 13.1093 0.3640 21 1 8.3654 14.7454 -0.3563 22 1 7.6953 12.9086 1.0781 23 6 5.6899 9.0135 -0.7158 24 6 5.2378 7.5612 -0.8852 25 6 3.5944 5.2140 0.9857 26 6 2.8558 6.1974 1.7963 27 8 3.2656 7.3375 1.8905 28 8 1.7256 5.8328 2.4334 29 6 3.1235 3.9029 0.8701 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9873 0.9332 -0.0764 36 1 5.5386 2.6382 -1.1307 37 1 6.3728 4.9396 -0.9478 38 1 7.2864 6.3947 0.3621 39 1 6.5671 6.4286 1.9903 40 1 8.0504 8.3918 1.5994 41 1 6.3610 8.8873 1.8627 42 1 6.8088 11.0253 0.5248 43 1 8.4814 10.4165 0.5276 44 1 8.7266 13.6756 -2.8531 45 1 4.9933 9.5372 -0.0610 46 1 5.7127 9.5033 -1.6893 47 1 5.9191 7.0448 -1.5615 48 1 4.2295 7.5397 -1.2986 49 1 1.2760 6.5127 2.9536 50 1 2.2160 3.6072 1.3758 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033078741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:08 Heat of formation + Delta-G solvation = -65.712346 kcal Electronic energy + Delta-G solvation = -32695.702585 eV Core-core repulsion = 28302.635590 eV Total energy + Delta-G solvation = -4393.066995 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16456 -40.20739 -39.26930 -37.96281 -36.03633 -35.54901 -34.23505 -33.24597 -32.34162 -31.63839 -30.48174 -29.65008 -27.75008 -25.52203 -24.96727 -24.22748 -23.11008 -22.70378 -21.14512 -21.03481 -20.54086 -19.15834 -18.52479 -17.60359 -17.50769 -17.05171 -16.67270 -16.23845 -15.93397 -15.50944 -15.30072 -14.82366 -14.63088 -14.62107 -14.35051 -14.30574 -13.93262 -13.86268 -13.59663 -13.28951 -12.95805 -12.87613 -12.74969 -12.63328 -12.25845 -12.24192 -12.00705 -11.91355 -11.66555 -11.48049 -11.38455 -11.01496 -10.86072 -10.74305 -10.52057 -10.42160 -10.33699 -10.22713 -10.03537 -9.79233 -9.27790 -9.22886 -8.53330 -8.34683 -8.18479 -7.31208 -6.02004 -3.98945 0.50520 0.96137 2.10838 2.54160 2.65255 3.06803 3.31755 3.39162 3.42958 3.55432 3.86459 4.13670 4.45827 4.50886 4.56710 4.60237 4.65644 4.81512 4.92384 5.04343 5.14066 5.19629 5.30342 5.31332 5.32353 5.44853 5.48207 5.60223 5.66478 5.69845 5.74499 5.77777 5.85553 5.87350 6.00235 6.02151 6.12240 6.19276 6.38683 6.51908 6.56427 6.61824 6.70735 6.87788 6.90531 7.02521 7.19196 7.44414 7.63679 7.67440 7.95568 8.07542 8.09346 8.69612 9.05828 9.60193 11.11033 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.002082 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.484953 B =13447.359250 C =13987.738473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.142 4.142 3 C 0.507 3.493 4 O -0.514 6.514 5 N -0.675 5.675 6 C 0.120 3.880 7 C -0.099 4.099 8 C -0.141 4.141 9 C 0.152 3.848 10 N -0.494 5.494 11 C 0.071 3.929 12 C 0.055 3.945 13 N -0.529 5.529 14 C 0.162 3.838 15 C -0.508 4.508 16 H 0.080 0.920 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.875 3.125 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.069 3.931 24 C 0.069 3.931 25 C -0.090 4.090 26 C 0.515 3.485 27 O -0.463 6.463 28 O -0.522 6.522 29 C -0.062 4.062 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.412 0.588 36 H 0.131 0.869 37 H 0.139 0.861 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.036 0.964 42 H -0.010 1.010 43 H 0.024 0.976 44 H 0.263 0.737 45 H 0.034 0.966 46 H 0.093 0.907 47 H 0.045 0.955 48 H 0.071 0.929 49 H 0.410 0.590 50 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.295 -29.736 8.512 33.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C 0.295 3.705 4 O -0.388 6.388 5 N -0.321 5.321 6 C 0.027 3.973 7 C -0.120 4.120 8 C -0.162 4.162 9 C 0.056 3.944 10 N -0.215 5.215 11 C -0.056 4.056 12 C -0.074 4.074 13 N -0.254 5.254 14 C 0.036 3.964 15 C -0.546 4.546 16 H 0.098 0.902 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.060 4.060 24 C -0.057 4.057 25 C -0.093 4.093 26 C 0.356 3.644 27 O -0.347 6.347 28 O -0.335 6.335 29 C -0.083 4.083 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.248 0.752 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.054 0.946 42 H 0.008 0.992 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.090 0.910 49 H 0.268 0.732 50 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.514 -28.877 8.220 32.528 hybrid contribution 0.383 0.699 0.978 1.262 sum -12.132 -28.178 9.199 32.028 Atomic orbital electron populations 1.21556 0.92586 1.01899 1.03682 1.21644 0.99055 0.92797 1.04672 1.21069 0.81532 0.92492 0.75384 1.90774 1.54909 1.46293 1.46828 1.43615 1.07983 1.06946 1.73601 1.17566 0.95766 0.85254 0.98745 1.20982 0.96068 0.96698 0.98232 1.21614 1.01335 0.93003 1.00233 1.18844 0.92194 0.90109 0.93262 1.59625 1.25175 1.11577 1.25156 1.22189 0.86788 0.97970 0.98628 1.22093 0.99920 0.93089 0.92316 1.62142 1.22693 1.20064 1.20459 1.20152 0.94182 0.83835 0.98237 1.21027 1.43566 0.98310 0.91684 0.90184 1.24894 0.95247 0.97589 0.95628 1.69894 1.46559 1.16255 1.21326 0.86863 0.79122 0.79813 0.83995 1.20215 1.21244 1.19211 1.22011 0.89249 0.93370 1.01362 1.22287 1.00397 0.95705 0.87344 1.18896 0.96072 0.92694 1.01660 1.20541 0.78665 0.87137 0.78016 1.91020 1.65939 1.19787 1.57972 1.84584 1.38812 1.47751 1.62346 1.21349 0.99804 0.91350 0.95768 0.91783 0.91817 0.91744 0.88602 0.88483 0.75249 0.85073 0.84335 0.93726 0.91157 0.90860 0.94601 0.99217 0.95826 0.92718 0.94733 0.88841 0.93720 0.91023 0.73239 0.83230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.20 37.16 0.34 -0.36 16 2 C -0.14 -0.54 6.42 -27.88 -0.18 -0.72 16 3 C 0.51 3.94 7.56 -10.98 -0.08 3.86 16 4 O -0.51 -6.28 13.67 5.55 0.08 -6.20 16 5 N -0.68 -4.34 5.35 -9.86 -0.05 -4.39 16 6 C 0.12 1.14 6.28 -83.67 -0.53 0.62 16 7 C -0.10 -0.87 9.94 -39.36 -0.39 -1.26 16 8 C -0.14 -1.57 8.61 -39.45 -0.34 -1.91 16 9 C 0.15 2.09 4.72 -83.54 -0.39 1.70 16 10 N -0.49 -7.91 2.60 -170.70 -0.44 -8.36 16 11 C 0.07 1.09 5.30 -3.77 -0.02 1.07 16 12 C 0.05 1.00 5.61 -3.77 -0.02 0.98 16 13 N -0.53 -11.45 4.70 -235.90 -1.11 -12.56 16 14 C 0.16 4.06 3.79 -4.98 -0.02 4.04 16 15 C -0.51 -14.60 9.03 -34.44 -0.31 -14.91 16 16 H 0.08 2.48 7.37 -52.48 -0.39 2.10 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 19 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 23 C 0.07 1.41 5.43 -3.77 -0.02 1.39 16 24 C 0.07 1.17 5.35 -3.77 -0.02 1.15 16 25 C -0.09 -1.23 5.89 -104.84 -0.62 -1.85 16 26 C 0.52 7.43 8.26 34.42 0.28 7.71 16 27 O -0.46 -8.14 15.80 -19.28 -0.30 -8.44 16 28 O -0.52 -5.86 12.68 -40.67 -0.52 -6.38 16 29 C -0.06 -0.74 8.22 -38.98 -0.32 -1.06 16 30 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.41 1.08 8.82 -40.82 -0.36 0.72 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.14 1.47 7.03 -52.48 -0.37 1.10 16 38 H 0.04 0.65 7.22 -51.93 -0.38 0.28 16 39 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 40 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H -0.01 -0.26 7.18 -51.93 -0.37 -0.63 16 43 H 0.02 0.59 7.45 -51.93 -0.39 0.20 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 2.08 6.79 -51.93 -0.35 1.72 16 47 H 0.04 0.73 7.43 -51.93 -0.39 0.35 16 48 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 49 H 0.41 2.81 9.11 45.56 0.42 3.23 16 50 H 0.15 1.88 5.96 -52.48 -0.31 1.56 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -37.16 404.02 -9.58 -46.74 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.69 Total: 0.97 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -2.73 Total: 2.33 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: -0.83 Total: -52.40 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.74 Total: -21.02 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.16 -9.58 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033078741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.968 kcal (2) G-P(sol) polarization free energy of solvation -37.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds