Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.47248 * 2 1 4 4 O 1.21291 * 120.00038 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.40171 * 119.99815 * 185.27433 * 5 3 2 7 7 C 1.39176 * 119.89085 * 213.43801 * 6 5 3 8 8 C 1.37889 * 120.36962 * 179.97438 * 7 6 5 9 9 C 1.38946 * 120.14846 * 0.04377 * 8 7 6 10 10 N 1.39021 * 120.10875 * 179.97438 * 9 8 7 11 11 C 1.46956 * 110.99755 * 299.99722 * 10 9 8 12 12 C 1.53051 * 109.36325 * 183.18964 * 11 10 9 13 13 N 1.46958 * 109.36604 * 301.60106 * 12 11 10 14 14 C 1.46901 * 111.00175 * 183.18641 * 13 12 11 15 15 C 1.50698 * 109.47020 * 169.99657 * 14 13 12 16 16 H 1.08004 * 120.00027 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99980 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99937 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99846 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46975 * 89.99929 * 19 17 15 21 21 H 1.48505 * 109.47111 * 209.99626 * 19 17 15 22 22 H 1.48491 * 109.47379 * 329.99823 * 19 17 15 23 23 C 1.46959 * 110.88009 * 59.31674 * 13 12 11 24 24 C 1.46955 * 110.99947 * 63.79936 * 10 9 8 25 25 C 1.40356 * 119.77934 * 0.23181 * 9 8 7 26 26 C 1.47303 * 120.18256 * 179.74882 * 25 9 8 27 27 O 1.21523 * 119.99495 * 359.97438 * 26 25 9 28 28 O 1.34764 * 120.00406 * 179.97438 * 26 25 9 29 29 C 1.38311 * 119.89460 * 33.41740 * 6 5 3 30 30 H 1.08996 * 109.46551 * 60.00130 * 1 2 3 31 31 H 1.08990 * 109.46844 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46696 * 300.00647 * 1 2 3 33 33 H 1.08994 * 109.46954 * 239.99784 * 2 1 3 34 34 H 1.09005 * 109.46546 * 119.99701 * 2 1 3 35 35 H 0.96999 * 120.00055 * 5.27667 * 5 3 2 36 36 H 1.08004 * 119.81404 * 359.97438 * 7 6 5 37 37 H 1.08003 * 119.92828 * 180.02562 * 8 7 6 38 38 H 1.09000 * 109.48843 * 63.22881 * 11 10 9 39 39 H 1.08995 * 109.49359 * 303.15807 * 11 10 9 40 40 H 1.09000 * 109.49123 * 181.63382 * 12 11 10 41 41 H 1.09002 * 109.50752 * 61.57996 * 12 11 10 42 42 H 1.08996 * 109.47038 * 290.00294 * 14 13 12 43 43 H 1.09000 * 109.47031 * 50.00418 * 14 13 12 44 44 H 0.97005 * 120.00200 * 180.02562 * 18 17 15 45 45 H 1.09003 * 109.48425 * 60.64941 * 23 13 12 46 46 H 1.09001 * 109.48489 * 180.71217 * 23 13 12 47 47 H 1.09003 * 109.48966 * 296.77405 * 24 10 9 48 48 H 1.08997 * 109.49188 * 56.81915 * 24 10 9 49 49 H 0.96695 * 117.00242 * 179.97438 * 28 26 25 50 50 H 1.08007 * 120.07172 * 0.02562 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3576 1.6670 0.0005 6 6 3.8257 2.9835 0.1121 7 6 4.9954 3.3614 -0.5406 8 6 5.4645 4.6540 -0.4380 9 6 4.7716 5.5898 0.3201 10 7 5.2456 6.8926 0.4234 11 6 6.5898 6.9184 1.0168 12 6 7.0420 8.3707 1.1862 13 7 7.0341 9.0394 -0.1224 14 6 7.5350 10.4160 -0.0132 15 6 7.7447 10.9851 -1.3927 16 1 7.5272 10.3844 -2.2635 17 6 8.2132 12.2731 -1.5432 18 7 8.3967 12.7696 -2.7471 19 14 8.5887 13.3123 -0.0371 20 1 10.0040 13.1093 0.3640 21 1 8.3654 14.7454 -0.3563 22 1 7.6953 12.9086 1.0781 23 6 5.6899 9.0135 -0.7158 24 6 5.2378 7.5612 -0.8852 25 6 3.5944 5.2140 0.9857 26 6 2.8558 6.1974 1.7963 27 8 3.2656 7.3375 1.8905 28 8 1.7256 5.8328 2.4334 29 6 3.1235 3.9029 0.8701 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9873 0.9332 -0.0764 36 1 5.5386 2.6382 -1.1307 37 1 6.3728 4.9396 -0.9478 38 1 7.2864 6.3947 0.3621 39 1 6.5671 6.4286 1.9903 40 1 8.0504 8.3918 1.5994 41 1 6.3610 8.8873 1.8627 42 1 6.8088 11.0253 0.5248 43 1 8.4814 10.4165 0.5276 44 1 8.7266 13.6756 -2.8531 45 1 4.9933 9.5372 -0.0610 46 1 5.7127 9.5033 -1.6893 47 1 5.9191 7.0448 -1.5615 48 1 4.2295 7.5397 -1.2986 49 1 1.2760 6.5127 2.9536 50 1 2.2160 3.6072 1.3758 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033078741.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = -93.881745 kcal Electronic energy + Delta-G solvation = -32696.924101 eV Core-core repulsion = 28302.635590 eV Total energy + Delta-G solvation = -4394.288511 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.03076 -41.06789 -40.45114 -39.07081 -37.18304 -36.70306 -35.31912 -34.44673 -33.64394 -32.50690 -31.93468 -31.04118 -29.19836 -26.84742 -25.81550 -25.11800 -24.56550 -23.79544 -22.88548 -21.86179 -21.32707 -20.57091 -19.36476 -18.97278 -18.58563 -18.13062 -18.08080 -16.87367 -16.75660 -16.64969 -16.57436 -16.15110 -15.99774 -15.87359 -15.73018 -15.34982 -15.19605 -15.07530 -14.69315 -14.43954 -14.25868 -14.08281 -13.74321 -13.68611 -13.50597 -13.15475 -13.10856 -12.92604 -12.78439 -12.60425 -12.46712 -12.44729 -12.26312 -12.18806 -11.98962 -11.86746 -11.65223 -11.59465 -11.39491 -11.29039 -10.90725 -10.78541 -10.14216 -9.39568 -9.14224 -9.08199 -8.29205 -6.32129 -0.40398 0.10009 1.32955 1.35128 1.42775 1.45972 1.73583 1.98994 2.16979 2.33459 2.65539 2.70638 3.03053 3.17157 3.63603 3.79123 3.87631 3.95369 4.11477 4.14193 4.24903 4.25605 4.26147 4.31364 4.34073 4.36637 4.50595 4.57317 4.70006 4.74792 4.76898 4.80885 4.85854 4.92093 4.94243 5.02407 5.03929 5.07772 5.10320 5.14227 5.22602 5.34812 5.41119 5.50616 5.66004 5.73612 5.86989 5.94982 6.28074 6.38024 6.42627 6.61816 6.72885 7.09764 7.15707 7.31212 8.87047 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.002082 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.484953 B =13447.359250 C =13987.738473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.502 3.498 4 O -0.565 6.565 5 N -0.660 5.660 6 C 0.127 3.873 7 C -0.079 4.079 8 C -0.139 4.139 9 C 0.129 3.871 10 N -0.506 5.506 11 C 0.078 3.922 12 C 0.054 3.946 13 N -0.535 5.535 14 C 0.172 3.828 15 C -0.514 4.514 16 H 0.041 0.959 17 C 0.010 3.990 18 N -0.945 5.945 19 Si 0.945 3.055 20 H -0.261 1.261 21 H -0.281 1.281 22 H -0.259 1.259 23 C 0.075 3.925 24 C 0.083 3.917 25 C -0.109 4.109 26 C 0.517 3.483 27 O -0.505 6.505 28 O -0.516 6.516 29 C -0.068 4.068 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.434 0.566 36 H 0.173 0.827 37 H 0.147 0.853 38 H 0.058 0.942 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.020 0.980 42 H -0.021 1.021 43 H 0.033 0.967 44 H 0.267 0.733 45 H 0.014 0.986 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.427 0.573 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.437 -33.390 9.648 36.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.292 3.708 4 O -0.443 6.443 5 N -0.308 5.308 6 C 0.033 3.967 7 C -0.100 4.100 8 C -0.160 4.160 9 C 0.033 3.967 10 N -0.227 5.227 11 C -0.048 4.048 12 C -0.074 4.074 13 N -0.259 5.259 14 C 0.044 3.956 15 C -0.552 4.552 16 H 0.060 0.940 17 C -0.188 4.188 18 N -0.586 5.586 19 Si 0.769 3.231 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.054 4.054 24 C -0.043 4.043 25 C -0.111 4.111 26 C 0.360 3.640 27 O -0.394 6.394 28 O -0.330 6.330 29 C -0.089 4.089 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.274 0.726 36 H 0.191 0.809 37 H 0.165 0.835 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.038 0.962 42 H -0.003 1.003 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.032 0.968 46 H 0.083 0.917 47 H 0.071 0.929 48 H 0.091 0.909 49 H 0.288 0.712 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.657 -32.613 9.376 35.881 hybrid contribution -0.009 1.667 0.576 1.764 sum -11.666 -30.946 9.952 34.537 Atomic orbital electron populations 1.21575 0.93896 1.02733 1.01811 1.21712 0.97779 0.90248 1.07389 1.21891 0.81346 0.93657 0.73891 1.90768 1.56221 1.48136 1.49149 1.43571 1.08236 1.06355 1.72603 1.17686 0.95440 0.86219 0.97372 1.21314 0.95274 0.96389 0.96987 1.21701 1.01277 0.93442 0.99553 1.18854 0.93044 0.89476 0.95316 1.59420 1.25500 1.13581 1.24220 1.22133 0.86904 0.95830 0.99908 1.22207 1.00636 0.94482 0.90064 1.62086 1.23049 1.18130 1.22678 1.19930 0.94370 0.85561 0.95699 1.21213 1.43262 0.98390 0.92379 0.94032 1.25798 0.95038 0.98981 0.98956 1.70037 1.47780 1.16958 1.23814 0.85740 0.79686 0.77808 0.79857 1.18524 1.20655 1.18341 1.21875 0.88540 0.95782 0.99194 1.22035 1.00386 0.93350 0.88566 1.18953 0.96439 0.93275 1.02479 1.20842 0.78815 0.86779 0.77572 1.90998 1.67218 1.21404 1.59733 1.84556 1.37932 1.48396 1.62132 1.21287 0.99791 0.91269 0.96585 0.93757 0.89536 0.93626 0.85629 0.85632 0.72605 0.80942 0.83537 0.92421 0.89349 0.89298 0.96166 1.00307 0.94873 0.92399 0.96768 0.91686 0.92886 0.90905 0.71236 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.20 71.98 0.66 -0.54 16 2 C -0.13 -0.55 6.42 29.85 0.19 -0.35 16 3 C 0.50 6.60 7.56 87.66 0.66 7.27 16 4 O -0.57 -13.50 13.67 -3.06 -0.04 -13.54 16 5 N -0.66 -6.12 5.35 -303.50 -1.62 -7.74 16 6 C 0.13 2.07 6.28 38.05 0.24 2.30 16 7 C -0.08 -1.08 9.94 22.41 0.22 -0.85 16 8 C -0.14 -2.72 8.61 22.36 0.19 -2.53 16 9 C 0.13 3.41 4.72 38.69 0.18 3.60 16 10 N -0.51 -16.12 2.60 -693.96 -1.81 -17.93 16 11 C 0.08 2.32 5.30 86.31 0.46 2.78 16 12 C 0.05 1.97 5.61 86.31 0.48 2.46 16 13 N -0.53 -23.59 4.70 -900.27 -4.23 -27.82 16 14 C 0.17 8.71 3.79 85.56 0.32 9.03 16 15 C -0.51 -30.61 9.03 25.60 0.23 -30.38 16 16 H 0.04 2.73 7.37 -2.91 -0.02 2.71 16 17 C 0.01 0.58 5.47 84.66 0.46 1.05 16 18 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 19 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 20 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 23 C 0.07 3.22 5.43 86.31 0.47 3.69 16 24 C 0.08 2.88 5.35 86.31 0.46 3.34 16 25 C -0.11 -2.92 5.89 -20.00 -0.12 -3.04 16 26 C 0.52 15.24 8.26 70.21 0.58 15.82 16 27 O -0.51 -18.44 15.80 19.76 0.31 -18.13 16 28 O -0.52 -11.77 12.68 -56.75 -0.72 -12.49 16 29 C -0.07 -1.56 8.22 22.66 0.19 -1.37 16 30 H 0.04 0.54 8.10 -2.39 -0.02 0.52 16 31 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.04 0.55 8.10 -2.39 -0.02 0.53 16 33 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.13 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.43 0.15 8.82 -92.71 -0.82 -0.67 16 36 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.15 2.65 7.03 -2.91 -0.02 2.63 16 38 H 0.06 1.56 7.22 -2.39 -0.02 1.55 16 39 H 0.09 2.32 8.13 -2.39 -0.02 2.30 16 40 H 0.09 2.91 8.07 -2.39 -0.02 2.89 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H -0.02 -1.09 7.18 -2.39 -0.02 -1.11 16 43 H 0.03 1.62 7.45 -2.39 -0.02 1.60 16 44 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 45 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 46 H 0.06 3.11 6.79 -2.39 -0.02 3.10 16 47 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 48 H 0.07 2.47 8.13 -2.39 -0.02 2.45 16 49 H 0.43 5.96 9.11 -74.06 -0.67 5.29 16 50 H 0.14 3.47 5.96 -2.91 -0.02 3.46 16 Total: -1.00 -85.81 404.02 -0.60 -86.41 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -0.56 Total: 11.21 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 5.89 Total: 12.27 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -7.36 Total: -113.20 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -0.45 Total: -44.16 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -85.81 -0.60 -86.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033078741.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.475 kcal (2) G-P(sol) polarization free energy of solvation -85.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds