Wall clock time and date at job start Tue Mar 31 2020 05:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86799 * 120.00366 * 2 1 4 4 H 1.48501 * 109.47645 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46884 * 299.99920 * 3 2 1 6 6 H 1.48505 * 109.46910 * 59.99629 * 3 2 1 7 7 C 1.38902 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00408 * 180.02562 * 7 2 1 9 9 O 1.34787 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.34716 * 117.00523 * 180.02562 * 9 7 2 11 11 O 1.21512 * 119.99605 * 0.02562 * 10 9 7 12 12 C 1.47648 * 120.00230 * 180.02562 * 10 9 7 13 13 C 1.38728 * 121.19432 * 90.02307 * 12 10 9 14 14 C 1.40608 * 119.91246 * 179.97438 * 13 12 10 15 15 N 1.33085 * 121.05721 * 0.05363 * 14 13 12 16 16 C 1.33077 * 122.93699 * 359.95632 * 15 14 13 17 17 C 1.40796 * 121.07383 * 180.02562 * 16 15 14 18 18 C 1.36109 * 119.74327 * 179.97438 * 17 16 15 19 19 C 1.39274 * 121.09795 * 0.04557 * 18 17 16 20 20 C 1.36434 * 120.78555 * 359.97438 * 19 18 17 21 21 C 1.39758 * 119.61249 * 359.97438 * 20 19 18 22 22 C 1.47340 * 110.18318 * 180.02562 * 14 13 12 23 23 C 1.35001 * 125.83776 * 180.02562 * 22 14 13 24 24 C 1.46288 * 119.99692 * 8.49577 * 23 22 14 25 25 C 1.36694 * 125.99269 * 187.00504 * 24 23 22 26 26 C 1.40565 * 106.70125 * 179.91233 * 25 24 23 27 27 C 1.34993 * 107.11288 * 0.35200 * 26 25 24 28 28 O 1.34216 * 108.78923 * 359.78132 * 27 26 25 29 29 C 1.50834 * 108.33182 * 0.03530 * 22 14 13 30 30 C 1.50893 * 130.42325 * 0.03679 * 13 12 10 31 31 H 0.97002 * 119.99737 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.12331 * 359.96852 * 17 16 15 33 33 H 1.08003 * 119.44957 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.60224 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.19229 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.99981 * 188.50000 * 23 22 14 37 37 H 1.07998 * 126.65564 * 0.02562 * 25 24 23 38 38 H 1.07994 * 126.43942 * 180.09780 * 26 25 24 39 39 H 1.08004 * 125.60061 * 179.75641 * 27 26 25 40 40 H 1.08998 * 110.23908 * 240.99263 * 29 22 14 41 41 H 1.08996 * 110.24230 * 119.00708 * 29 22 14 42 42 H 1.09003 * 110.09526 * 60.74948 * 30 13 12 43 43 H 1.08998 * 110.10124 * 299.20299 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7076 1.3463 0.0006 5 1 1.8889 2.3963 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0080 -1.2029 0.0005 8 1 3.0880 -1.2030 0.0010 9 8 1.3341 -2.3702 0.0016 10 6 2.0678 -3.5001 0.0026 11 8 3.2812 -3.4365 0.0030 12 6 1.3974 -4.8156 0.0032 13 6 1.0721 -5.4568 -1.1832 14 6 0.4343 -6.7096 -1.1512 15 7 0.1330 -7.2972 0.0042 16 6 0.4089 -6.7525 1.1867 17 6 0.0727 -7.4096 2.3857 18 6 0.3680 -6.8278 3.5802 19 6 0.9992 -5.5877 3.6399 20 6 1.3394 -4.9217 2.4988 21 6 1.0517 -5.4908 1.2552 22 6 0.1910 -7.1913 -2.5222 23 6 -0.4024 -8.3569 -2.8567 24 6 -1.0331 -9.1792 -1.8243 25 6 -1.5468 -10.4338 -1.9992 26 6 -2.0468 -10.8433 -0.7509 27 6 -1.8267 -9.8323 0.1161 28 8 -1.2151 -8.8303 -0.5345 29 6 0.7184 -6.1599 -3.4881 30 6 1.2898 -5.0344 -2.6153 31 1 -0.4850 0.8401 0.0004 32 1 -0.4178 -8.3714 2.3576 33 1 0.1083 -7.3362 4.4970 34 1 1.2218 -5.1482 4.6009 35 1 1.8290 -3.9607 2.5563 36 1 -0.4113 -8.6822 -3.8866 37 1 -1.5635 -11.0014 -2.9179 38 1 -2.5218 -11.7873 -0.5285 39 1 -2.0984 -9.8302 1.1614 40 1 -0.0903 -5.7790 -4.1118 41 1 1.5034 -6.5913 -4.1091 42 1 2.3550 -4.9125 -2.8120 43 1 0.7633 -4.1011 -2.8148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033547257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:39 Heat of formation + Delta-G solvation = 28.658235 kcal Electronic energy + Delta-G solvation = -31542.505654 eV Core-core repulsion = 27292.713949 eV Total energy + Delta-G solvation = -4249.791705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20607 -40.74865 -38.88456 -38.31363 -35.36450 -35.15167 -33.56733 -32.83641 -32.28407 -31.97065 -29.82602 -29.30518 -27.95846 -25.93523 -24.72408 -24.25979 -22.74177 -22.19911 -21.56525 -20.69048 -20.47330 -18.76440 -18.01001 -17.84691 -17.52219 -16.79592 -16.43188 -15.74050 -15.48701 -15.18629 -14.82795 -14.54037 -14.45290 -14.44294 -14.24952 -13.83240 -13.77400 -13.59874 -13.01396 -12.77261 -12.72340 -12.57622 -12.15999 -11.90381 -11.84127 -11.70999 -11.67285 -11.57185 -11.42252 -11.30374 -11.18459 -10.55332 -10.50110 -10.22838 -10.14150 -9.78965 -9.72010 -9.48571 -8.90740 -8.70637 -8.62544 -8.00744 -7.50869 -6.53133 -4.21201 0.14229 0.80640 1.38492 2.07793 2.38413 2.87149 2.95162 3.12597 3.18646 3.20073 3.27016 3.29672 3.77734 3.97232 4.22613 4.25609 4.35897 4.61424 4.80104 4.85674 4.98008 4.99595 5.04307 5.09815 5.17624 5.23766 5.24917 5.34254 5.48644 5.52845 5.58127 5.70142 5.82623 5.89558 5.92901 6.03612 6.07658 6.09127 6.18805 6.21255 6.29761 6.33551 6.45132 6.56314 6.61787 6.63851 6.75150 6.98114 7.27062 7.37929 7.79330 8.06452 8.49474 8.94060 9.67436 10.63702 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.003237 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.072108 B = 8647.901462 C =10104.581187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.387 4.387 8 H 0.099 0.901 9 O -0.197 6.197 10 C 0.437 3.563 11 O -0.538 6.538 12 C -0.003 4.003 13 C -0.104 4.104 14 C 0.174 3.826 15 N -0.433 5.433 16 C 0.134 3.866 17 C -0.092 4.092 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.082 4.082 21 C -0.069 4.069 22 C -0.064 4.064 23 C -0.051 4.051 24 C 0.009 3.991 25 C -0.200 4.200 26 C -0.228 4.228 27 C -0.042 4.042 28 O -0.097 6.097 29 C -0.080 4.080 30 C -0.085 4.085 31 H 0.272 0.728 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.193 0.807 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -17.485 -1.605 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.160 4.160 3 Si 0.768 3.232 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.463 4.463 8 H 0.117 0.883 9 O -0.103 6.103 10 C 0.284 3.716 11 O -0.435 6.435 12 C -0.012 4.012 13 C -0.106 4.106 14 C 0.023 3.977 15 N -0.142 5.142 16 C 0.012 3.988 17 C -0.111 4.111 18 C -0.125 4.125 19 C -0.135 4.135 20 C -0.100 4.100 21 C -0.071 4.071 22 C -0.065 4.065 23 C -0.072 4.072 24 C -0.043 4.043 25 C -0.220 4.220 26 C -0.247 4.247 27 C -0.113 4.113 28 O 0.013 5.987 29 C -0.117 4.117 30 C -0.122 4.122 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.993 -17.773 -1.323 18.264 hybrid contribution 0.677 1.340 0.157 1.509 sum -3.316 -16.434 -1.166 16.806 Atomic orbital electron populations 1.69975 1.06126 1.27931 1.45097 1.25400 0.95805 0.98908 0.95839 0.85605 0.79549 0.79781 0.78302 1.18768 1.19978 1.20004 1.21364 0.92565 0.79520 1.52860 0.88330 1.84004 1.38947 1.13024 1.74347 1.20417 0.85902 0.85030 0.80300 1.90697 1.14497 1.87447 1.50876 1.20145 0.96246 0.93076 0.91730 1.21342 0.98354 0.95689 0.95223 1.20492 0.94590 0.90739 0.91839 1.67149 1.16907 1.33659 0.96450 1.18551 0.97330 0.91083 0.91802 1.20685 1.00485 0.99972 0.89930 1.20838 0.98438 0.95521 0.97655 1.20934 0.98968 0.95148 0.98446 1.20994 0.98048 0.99952 0.91033 1.19600 0.99458 0.95359 0.92702 1.20949 0.99347 0.95373 0.90846 1.20725 0.97832 0.92446 0.96157 1.20690 1.04300 0.95189 0.84127 1.21821 1.05224 0.95623 0.99307 1.21625 1.08202 1.01232 0.93659 1.24287 1.00153 0.88054 0.98824 1.85062 1.57290 1.37550 1.18836 1.20898 1.01096 0.93212 0.96510 1.20794 1.03026 0.99506 0.88865 0.91835 0.85071 0.85386 0.85343 0.84938 0.82729 0.83881 0.84116 0.79064 0.88716 0.88998 0.89052 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.49 0.76 -23.81 16 2 C 0.05 1.27 5.50 -17.51 -0.10 1.17 16 3 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 4 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.21 9.65 30.98 0.30 -10.91 16 8 H 0.10 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.20 -5.66 9.75 -21.40 -0.21 -5.87 16 10 C 0.44 11.20 6.11 34.57 0.21 11.41 16 11 O -0.54 -14.75 16.35 -19.28 -0.32 -15.07 16 12 C 0.00 -0.07 5.95 -102.60 -0.61 -0.68 16 13 C -0.10 -1.98 6.14 -103.45 -0.63 -2.62 16 14 C 0.17 3.03 6.84 -82.73 -0.57 2.46 16 15 N -0.43 -7.65 6.10 -7.58 -0.05 -7.70 16 16 C 0.13 2.39 6.62 -85.01 -0.56 1.83 16 17 C -0.09 -1.31 9.99 -39.38 -0.39 -1.70 16 18 C -0.10 -1.32 9.94 -39.96 -0.40 -1.72 16 19 C -0.12 -1.68 9.97 -39.85 -0.40 -2.08 16 20 C -0.08 -1.50 9.48 -39.66 -0.38 -1.88 16 21 C -0.07 -1.38 5.90 -104.70 -0.62 -1.99 16 22 C -0.06 -0.87 6.16 -102.01 -0.63 -1.50 16 23 C -0.05 -0.60 10.05 -37.50 -0.38 -0.97 16 24 C 0.01 0.11 6.87 -36.91 -0.25 -0.14 16 25 C -0.20 -2.30 10.86 -39.26 -0.43 -2.72 16 26 C -0.23 -2.49 10.88 -39.86 -0.43 -2.92 16 27 C -0.04 -0.49 12.08 29.58 0.36 -0.13 16 28 O -0.10 -1.42 6.19 4.41 0.03 -1.40 16 29 C -0.08 -0.91 6.76 -27.58 -0.19 -1.10 16 30 C -0.08 -1.32 6.51 -27.55 -0.18 -1.50 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.13 2.63 7.35 -52.48 -0.39 2.24 16 36 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.19 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -35.43 376.67 -9.93 -45.36 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.53 Total: 4.83 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -6.27 Total: -17.68 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.71 Total: -31.51 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.50 Total: -22.33 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.43 -9.93 -45.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033547257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.017 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds