Wall clock time and date at job start Tue Mar 31 2020 05:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31353 * 1 3 3 Si 1.86799 * 120.00366 * 2 1 4 4 H 1.48501 * 109.47645 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46884 * 299.99920 * 3 2 1 6 6 H 1.48505 * 109.46910 * 59.99629 * 3 2 1 7 7 C 1.38902 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00408 * 180.02562 * 7 2 1 9 9 O 1.34787 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.34716 * 117.00523 * 180.02562 * 9 7 2 11 11 O 1.21512 * 119.99605 * 0.02562 * 10 9 7 12 12 C 1.47648 * 120.00230 * 180.02562 * 10 9 7 13 13 C 1.38728 * 121.19432 * 90.02307 * 12 10 9 14 14 C 1.40608 * 119.91246 * 179.97438 * 13 12 10 15 15 N 1.33085 * 121.05721 * 0.05363 * 14 13 12 16 16 C 1.33077 * 122.93699 * 359.95632 * 15 14 13 17 17 C 1.40796 * 121.07383 * 180.02562 * 16 15 14 18 18 C 1.36109 * 119.74327 * 179.97438 * 17 16 15 19 19 C 1.39274 * 121.09795 * 0.04557 * 18 17 16 20 20 C 1.36434 * 120.78555 * 359.97438 * 19 18 17 21 21 C 1.39758 * 119.61249 * 359.97438 * 20 19 18 22 22 C 1.47340 * 110.18318 * 180.02562 * 14 13 12 23 23 C 1.35001 * 125.83776 * 180.02562 * 22 14 13 24 24 C 1.46288 * 119.99692 * 8.49577 * 23 22 14 25 25 C 1.36694 * 125.99269 * 187.00504 * 24 23 22 26 26 C 1.40565 * 106.70125 * 179.91233 * 25 24 23 27 27 C 1.34993 * 107.11288 * 0.35200 * 26 25 24 28 28 O 1.34216 * 108.78923 * 359.78132 * 27 26 25 29 29 C 1.50834 * 108.33182 * 0.03530 * 22 14 13 30 30 C 1.50893 * 130.42325 * 0.03679 * 13 12 10 31 31 H 0.97002 * 119.99737 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.12331 * 359.96852 * 17 16 15 33 33 H 1.08003 * 119.44957 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.60224 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.19229 * 180.02562 * 20 19 18 36 36 H 1.08000 * 119.99981 * 188.50000 * 23 22 14 37 37 H 1.07998 * 126.65564 * 0.02562 * 25 24 23 38 38 H 1.07994 * 126.43942 * 180.09780 * 26 25 24 39 39 H 1.08004 * 125.60061 * 179.75641 * 27 26 25 40 40 H 1.08998 * 110.23908 * 240.99263 * 29 22 14 41 41 H 1.08996 * 110.24230 * 119.00708 * 29 22 14 42 42 H 1.09003 * 110.09526 * 60.74948 * 30 13 12 43 43 H 1.08998 * 110.10124 * 299.20299 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7076 1.3463 0.0006 5 1 1.8889 2.3963 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0080 -1.2029 0.0005 8 1 3.0880 -1.2030 0.0010 9 8 1.3341 -2.3702 0.0016 10 6 2.0678 -3.5001 0.0026 11 8 3.2812 -3.4365 0.0030 12 6 1.3974 -4.8156 0.0032 13 6 1.0721 -5.4568 -1.1832 14 6 0.4343 -6.7096 -1.1512 15 7 0.1330 -7.2972 0.0042 16 6 0.4089 -6.7525 1.1867 17 6 0.0727 -7.4096 2.3857 18 6 0.3680 -6.8278 3.5802 19 6 0.9992 -5.5877 3.6399 20 6 1.3394 -4.9217 2.4988 21 6 1.0517 -5.4908 1.2552 22 6 0.1910 -7.1913 -2.5222 23 6 -0.4024 -8.3569 -2.8567 24 6 -1.0331 -9.1792 -1.8243 25 6 -1.5468 -10.4338 -1.9992 26 6 -2.0468 -10.8433 -0.7509 27 6 -1.8267 -9.8323 0.1161 28 8 -1.2151 -8.8303 -0.5345 29 6 0.7184 -6.1599 -3.4881 30 6 1.2898 -5.0344 -2.6153 31 1 -0.4850 0.8401 0.0004 32 1 -0.4178 -8.3714 2.3576 33 1 0.1083 -7.3362 4.4970 34 1 1.2218 -5.1482 4.6009 35 1 1.8290 -3.9607 2.5563 36 1 -0.4113 -8.6822 -3.8866 37 1 -1.5635 -11.0014 -2.9179 38 1 -2.5218 -11.7873 -0.5285 39 1 -2.0984 -9.8302 1.1614 40 1 -0.0903 -5.7790 -4.1118 41 1 1.5034 -6.5913 -4.1091 42 1 2.3550 -4.9125 -2.8120 43 1 0.7633 -4.1011 -2.8148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033547257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:38 Heat of formation + Delta-G solvation = 9.323112 kcal Electronic energy + Delta-G solvation = -31543.344088 eV Core-core repulsion = 27292.713949 eV Total energy + Delta-G solvation = -4250.630139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.10672 -42.12654 -40.88350 -39.47661 -37.47126 -36.31075 -34.90493 -34.39942 -33.75887 -33.09948 -31.06242 -30.47963 -29.00982 -27.92037 -26.14187 -25.43105 -24.22425 -23.41224 -22.47819 -22.04798 -21.60219 -20.19043 -19.99643 -19.23447 -18.62805 -18.40220 -17.75644 -17.06490 -16.73384 -16.45339 -16.35627 -16.22480 -16.10409 -15.69778 -15.44894 -15.09701 -15.03322 -14.87055 -14.50565 -13.96862 -13.85591 -13.73216 -13.48266 -13.27040 -13.14578 -13.02902 -12.85339 -12.80052 -12.64646 -12.58266 -12.48304 -12.36043 -12.31090 -12.11986 -11.58636 -11.35961 -11.05095 -10.81778 -10.61791 -10.30297 -9.77613 -9.33260 -8.65480 -8.48054 -6.47166 -1.08939 -0.49048 0.32017 0.71261 1.03915 1.29136 1.45397 1.46152 1.49411 1.86639 1.99959 2.24191 2.33612 2.45213 2.84781 2.86403 2.98057 3.14319 3.48570 3.52511 3.74904 3.84335 3.99353 4.04306 4.18700 4.22716 4.23210 4.28520 4.31007 4.33208 4.52911 4.63908 4.68446 4.76816 4.85714 4.89618 4.96324 5.02320 5.03447 5.04985 5.10072 5.22955 5.24554 5.33444 5.36890 5.42187 5.54656 5.66852 5.79866 5.83728 6.35984 6.50851 6.74415 6.76929 7.54005 8.54755 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.012558 B = 0.003237 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.072108 B = 8647.901462 C =10104.581187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.002 3.998 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.255 1.255 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.085 0.915 9 O -0.227 6.227 10 C 0.451 3.549 11 O -0.568 6.568 12 C -0.059 4.059 13 C -0.113 4.113 14 C 0.163 3.837 15 N -0.426 5.426 16 C 0.114 3.886 17 C -0.086 4.086 18 C -0.091 4.091 19 C -0.094 4.094 20 C -0.129 4.129 21 C -0.093 4.093 22 C -0.099 4.099 23 C -0.016 4.016 24 C -0.036 4.036 25 C -0.186 4.186 26 C -0.235 4.235 27 C -0.049 4.049 28 O -0.128 6.128 29 C -0.061 4.061 30 C -0.091 4.091 31 H 0.283 0.717 32 H 0.165 0.835 33 H 0.183 0.817 34 H 0.160 0.840 35 H 0.096 0.904 36 H 0.201 0.799 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.219 0.781 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 -20.538 -1.654 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.200 4.200 3 Si 0.839 3.161 4 H -0.187 1.187 5 H -0.179 1.179 6 H -0.181 1.181 7 C -0.503 4.503 8 H 0.102 0.898 9 O -0.134 6.134 10 C 0.299 3.701 11 O -0.467 6.467 12 C -0.068 4.068 13 C -0.115 4.115 14 C 0.012 3.988 15 N -0.134 5.134 16 C -0.008 4.008 17 C -0.104 4.104 18 C -0.110 4.110 19 C -0.111 4.111 20 C -0.148 4.148 21 C -0.095 4.095 22 C -0.100 4.100 23 C -0.036 4.036 24 C -0.086 4.086 25 C -0.205 4.205 26 C -0.254 4.254 27 C -0.120 4.120 28 O -0.019 6.019 29 C -0.097 4.097 30 C -0.128 4.128 31 H 0.092 0.908 32 H 0.182 0.818 33 H 0.200 0.800 34 H 0.178 0.822 35 H 0.115 0.885 36 H 0.218 0.782 37 H 0.188 0.812 38 H 0.183 0.817 39 H 0.235 0.765 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.605 -20.847 -1.371 21.631 hybrid contribution 1.041 1.986 0.268 2.259 sum -4.564 -18.861 -1.103 19.436 Atomic orbital electron populations 1.70062 1.07903 1.29793 1.45388 1.26679 0.96876 1.02361 0.94039 0.84535 0.77797 0.74141 0.79623 1.18677 1.17873 1.18102 1.21591 0.92351 0.80640 1.55676 0.89758 1.84027 1.39961 1.13956 1.75427 1.21128 0.85670 0.85728 0.77572 1.90620 1.15994 1.88171 1.51898 1.20171 1.00271 0.91900 0.94450 1.21855 0.97400 0.96565 0.95705 1.21151 0.93953 0.90013 0.93674 1.67362 1.16369 1.33256 0.96460 1.19092 0.97622 0.90557 0.93514 1.21145 0.99537 1.00825 0.88894 1.21377 0.96172 0.94231 0.99187 1.21376 0.96369 0.95332 0.98063 1.20911 1.01374 0.99896 0.92615 1.19816 1.00817 0.96710 0.92204 1.21013 1.02877 0.97315 0.88809 1.21329 0.93978 0.90462 0.97821 1.21185 1.06509 0.96658 0.84277 1.22258 1.02986 0.94782 1.00522 1.22024 1.07971 1.02049 0.93342 1.24976 0.99235 0.87578 1.00173 1.84998 1.58175 1.38980 1.19793 1.20880 1.02431 0.90889 0.95535 1.20950 1.02838 1.00798 0.88251 0.90769 0.81788 0.80020 0.82209 0.88537 0.78230 0.81210 0.81661 0.76475 0.86509 0.85892 0.89587 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.77 13.67 21.65 0.30 -53.47 16 2 C 0.00 0.12 5.50 84.92 0.47 0.58 16 3 Si 1.02 43.58 29.55 68.60 2.03 45.60 16 4 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.43 -26.81 9.65 67.98 0.66 -26.15 16 8 H 0.08 5.35 6.86 -2.91 -0.02 5.33 16 9 O -0.23 -14.38 9.75 12.20 0.12 -14.26 16 10 C 0.45 25.82 6.11 70.31 0.43 26.25 16 11 O -0.57 -34.62 16.35 19.80 0.32 -34.29 16 12 C -0.06 -2.89 5.95 -18.55 -0.11 -3.00 16 13 C -0.11 -4.70 6.14 -19.11 -0.12 -4.81 16 14 C 0.16 5.87 6.84 41.93 0.29 6.16 16 15 N -0.43 -15.26 6.10 -177.90 -1.09 -16.34 16 16 C 0.11 4.15 6.62 40.45 0.27 4.42 16 17 C -0.09 -2.26 9.99 22.40 0.22 -2.04 16 18 C -0.09 -2.01 9.94 22.02 0.22 -1.79 16 19 C -0.09 -2.64 9.97 22.10 0.22 -2.42 16 20 C -0.13 -5.18 9.48 22.22 0.21 -4.97 16 21 C -0.09 -4.05 5.90 -19.92 -0.12 -4.16 16 22 C -0.10 -2.60 6.16 -18.17 -0.11 -2.71 16 23 C -0.02 -0.32 10.05 23.62 0.24 -0.09 16 24 C -0.04 -0.85 6.87 24.00 0.16 -0.69 16 25 C -0.19 -3.56 10.86 22.48 0.24 -3.31 16 26 C -0.23 -4.26 10.88 22.09 0.24 -4.02 16 27 C -0.05 -1.00 12.08 67.07 0.81 -0.19 16 28 O -0.13 -3.51 6.19 -7.15 -0.04 -3.56 16 29 C -0.06 -1.33 6.76 30.04 0.20 -1.13 16 30 C -0.09 -3.07 6.51 30.06 0.20 -2.87 16 31 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 32 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 34 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.10 4.42 7.35 -2.91 -0.02 4.40 16 36 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.22 2.86 8.06 -2.91 -0.02 2.83 16 40 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.12 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -88.21 376.67 7.32 -80.89 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 1.07 Total: 22.39 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.62 Total: -26.95 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: -0.79 Total: -69.82 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: 0.40 Total: -52.12 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -88.21 7.32 -80.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033547257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.210 kcal (2) G-P(sol) polarization free energy of solvation -88.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds