Wall clock time and date at job start Tue Mar 31 2020 05:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47549 * 269.99949 * 3 2 1 5 5 H 1.48503 * 109.47205 * 30.00351 * 3 2 1 6 6 H 1.48501 * 109.47127 * 150.00004 * 3 2 1 7 7 C 1.38668 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34790 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.35567 * 116.99925 * 185.19993 * 9 7 2 11 11 C 1.38735 * 120.16903 * 5.92206 * 10 9 7 12 12 C 1.38107 * 120.09317 * 179.97438 * 11 10 9 13 13 C 1.38569 * 120.42767 * 359.97438 * 12 11 10 14 14 C 1.37835 * 120.33067 * 359.97438 * 13 12 11 15 15 C 1.39797 * 119.90247 * 0.02562 * 14 13 12 16 16 C 1.47105 * 120.20834 * 179.97438 * 15 14 13 17 17 C 1.34573 * 120.00004 * 36.21041 * 16 15 14 18 18 C 1.47103 * 120.00356 * 8.49151 * 17 16 15 19 19 C 1.40738 * 118.90844 * 228.10066 * 18 17 16 20 20 C 1.38637 * 119.37050 * 179.79102 * 19 18 17 21 21 C 1.47793 * 121.30710 * 180.23715 * 20 19 18 22 22 O 1.21455 * 119.99233 * 185.78167 * 21 20 19 23 23 O 1.34709 * 120.00329 * 5.78420 * 21 20 19 24 24 C 1.46442 * 117.37646 * 0.44139 * 20 19 18 25 25 C 1.39848 * 121.44921 * 179.81532 * 24 20 19 26 26 C 1.36388 * 119.61937 * 179.97438 * 25 24 20 27 27 C 1.39304 * 120.81724 * 359.97438 * 26 25 24 28 28 C 1.36108 * 121.07940 * 0.02783 * 27 26 25 29 29 C 1.40759 * 119.71771 * 359.95159 * 28 27 26 30 30 N 1.32005 * 118.89883 * 48.37011 * 18 17 16 31 31 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.95622 * 359.97355 * 11 10 9 33 33 H 1.08000 * 119.78463 * 180.27537 * 12 11 10 34 34 H 1.07994 * 119.82983 * 180.02562 * 13 12 11 35 35 H 1.08002 * 120.04836 * 179.97438 * 14 13 12 36 36 H 1.07993 * 119.99790 * 216.20287 * 16 15 14 37 37 H 1.07998 * 119.99983 * 188.50187 * 17 16 15 38 38 H 1.07997 * 120.31732 * 0.02562 * 19 18 17 39 39 H 0.96699 * 117.00552 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.18917 * 0.02562 * 25 24 20 41 41 H 1.07996 * 119.59147 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.45799 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.14116 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0689 -3.5027 0.1084 11 6 3.4355 -3.4297 0.3365 12 6 4.1817 -4.5864 0.4478 13 6 3.5748 -5.8269 0.3335 14 6 2.2182 -5.9199 0.1079 15 6 1.4495 -4.7579 -0.0070 16 6 0.0013 -4.8493 -0.2483 17 6 -0.7145 -5.8370 0.3201 18 6 -0.0923 -6.7110 1.3264 19 6 -0.2449 -8.1048 1.2047 20 6 0.3411 -8.9377 2.1453 21 6 0.2125 -10.4073 2.0560 22 8 0.6447 -11.1099 2.9475 23 8 -0.3839 -10.9675 0.9859 24 6 1.0886 -8.3038 3.2334 25 6 1.7104 -9.0624 4.2302 26 6 2.3976 -8.4331 5.2262 27 6 2.4884 -7.0435 5.2628 28 6 1.8952 -6.2753 4.3087 29 6 1.1777 -6.8893 3.2649 30 7 0.5861 -6.1617 2.3166 31 1 -0.4850 0.8401 -0.0004 32 1 3.9164 -2.4669 0.4272 33 1 5.2444 -4.5238 0.6298 34 1 4.1676 -6.7252 0.4225 35 1 1.7499 -6.8890 0.0192 36 1 -0.4874 -4.1237 -0.8815 37 1 -1.7458 -5.9880 0.0372 38 1 -0.8100 -8.5218 0.3842 39 1 -0.4442 -11.9326 0.9720 40 1 1.6476 -10.1404 4.2110 41 1 2.8773 -9.0194 5.9959 42 1 3.0386 -6.5681 6.0614 43 1 1.9756 -5.1992 4.3516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033581525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:04 Heat of formation + Delta-G solvation = -5.033683 kcal Electronic energy + Delta-G solvation = -31195.068214 eV Core-core repulsion = 26943.815517 eV Total energy + Delta-G solvation = -4251.252696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.07537 -39.91136 -39.07524 -37.49981 -36.42964 -36.27967 -33.85970 -33.26873 -32.33895 -30.51139 -30.05233 -29.14368 -28.21581 -25.76093 -25.36287 -23.68079 -23.32276 -22.15350 -21.39561 -21.20212 -19.49746 -18.41094 -18.03469 -17.97700 -17.22565 -17.06289 -16.43868 -15.95357 -15.43962 -15.08170 -14.78492 -14.71881 -14.52729 -14.25641 -14.14237 -13.91046 -13.64410 -13.41201 -13.28108 -13.20664 -12.79360 -12.51484 -11.96101 -11.93930 -11.78692 -11.69701 -11.60222 -11.38440 -11.30406 -10.94186 -10.79905 -10.70866 -10.57444 -10.48799 -10.44523 -9.56073 -9.42719 -9.28412 -8.87343 -8.63182 -8.33320 -7.65989 -7.04204 -6.50072 -4.07173 -0.04796 0.75489 1.52302 1.69858 2.39369 2.46509 2.59532 2.78029 3.10713 3.11529 3.15978 3.19279 3.92614 4.15775 4.31075 4.35883 4.59614 4.68305 4.78269 4.84193 5.06324 5.11619 5.17596 5.18200 5.31624 5.43168 5.48561 5.56734 5.61181 5.73502 5.77904 5.91260 5.96231 6.06511 6.18497 6.22410 6.25353 6.33172 6.44755 6.54401 6.65927 6.77975 6.82991 6.88656 6.91209 7.11902 7.29244 7.35366 7.42076 7.55216 7.79399 7.94547 8.08782 8.95601 9.64599 10.67300 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.002876 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.101941 B = 9733.737708 C =10418.569614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.166 6.166 10 C 0.173 3.827 11 C -0.232 4.232 12 C -0.066 4.066 13 C -0.214 4.214 14 C -0.052 4.052 15 C -0.141 4.141 16 C 0.007 3.993 17 C -0.191 4.191 18 C 0.205 3.795 19 C -0.087 4.087 20 C -0.089 4.089 21 C 0.537 3.463 22 O -0.507 6.507 23 O -0.507 6.507 24 C -0.069 4.069 25 C -0.112 4.112 26 C -0.113 4.113 27 C -0.109 4.109 28 C -0.079 4.079 29 C 0.134 3.866 30 N -0.420 5.420 31 H 0.271 0.729 32 H 0.128 0.872 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.416 0.584 40 H 0.155 0.845 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 -17.528 4.196 18.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.068 6.068 10 C 0.118 3.882 11 C -0.251 4.251 12 C -0.084 4.084 13 C -0.233 4.233 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.013 4.013 17 C -0.210 4.210 18 C 0.052 3.948 19 C -0.108 4.108 20 C -0.098 4.098 21 C 0.382 3.618 22 O -0.396 6.396 23 O -0.319 6.319 24 C -0.071 4.071 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.129 4.129 28 C -0.098 4.098 29 C 0.013 3.987 30 N -0.128 5.128 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.275 0.725 40 H 0.172 0.828 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.935 -16.173 4.600 16.840 hybrid contribution 0.486 -0.681 0.023 0.837 sum 1.421 -16.854 4.623 17.534 Atomic orbital electron populations 1.70022 1.05926 1.27775 1.45403 1.25270 0.95828 0.98781 0.96408 0.85732 0.78984 0.80118 0.78747 1.19848 1.20222 1.19184 1.21327 0.91810 0.80765 1.52913 0.89092 1.83909 1.34265 1.11363 1.77302 1.19381 0.89996 0.87130 0.91656 1.21107 0.94160 0.98912 1.10928 1.20793 0.98349 0.92284 0.96980 1.20425 0.94699 0.96660 1.11473 1.20761 0.93592 0.95582 0.97069 1.17960 0.92938 0.90556 1.12765 1.22105 0.92418 0.92607 0.94154 1.21492 0.99522 0.99694 1.00280 1.20118 0.92103 0.89903 0.92632 1.22788 0.96650 0.93902 0.97431 1.20154 1.02968 0.88999 0.97665 1.20644 0.73748 0.88654 0.78795 1.90746 1.45959 1.63902 1.38989 1.84569 1.73263 1.29764 1.44311 1.19489 0.98785 0.93832 0.95013 1.21605 0.96224 1.01992 0.93201 1.21026 0.98921 0.94580 0.98617 1.20928 0.99297 0.93854 0.98821 1.20931 0.95599 1.00988 0.92244 1.18792 0.97170 0.88168 0.94608 1.68070 1.05086 1.39276 1.00409 0.91936 0.85479 0.87639 0.88062 0.87865 0.85146 0.84818 0.82931 0.72468 0.82752 0.85664 0.85355 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.31 13.67 55.48 0.76 -23.56 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.39 -10.61 9.44 30.89 0.29 -10.32 16 8 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 9 O -0.17 -4.54 9.21 0.72 0.01 -4.54 16 10 C 0.17 4.10 6.66 -38.57 -0.26 3.85 16 11 C -0.23 -5.02 9.12 -39.45 -0.36 -5.38 16 12 C -0.07 -1.23 10.03 -39.51 -0.40 -1.63 16 13 C -0.21 -3.89 10.02 -39.61 -0.40 -4.28 16 14 C -0.05 -0.97 7.51 -39.15 -0.29 -1.26 16 15 C -0.14 -2.93 4.89 -104.89 -0.51 -3.44 16 16 C 0.01 0.13 9.37 -37.28 -0.35 -0.22 16 17 C -0.19 -3.01 9.71 -37.28 -0.36 -3.37 16 18 C 0.20 3.23 3.88 -83.25 -0.32 2.91 16 19 C -0.09 -1.13 8.97 -38.49 -0.35 -1.47 16 20 C -0.09 -1.19 6.07 -102.54 -0.62 -1.81 16 21 C 0.54 6.17 8.27 34.64 0.29 6.45 16 22 O -0.51 -6.61 14.48 -19.23 -0.28 -6.89 16 23 O -0.51 -4.05 12.81 -40.52 -0.52 -4.57 16 24 C -0.07 -1.02 5.90 -104.65 -0.62 -1.64 16 25 C -0.11 -1.48 9.30 -39.65 -0.37 -1.85 16 26 C -0.11 -1.31 9.97 -39.85 -0.40 -1.70 16 27 C -0.11 -1.31 9.94 -39.95 -0.40 -1.70 16 28 C -0.08 -1.17 9.99 -39.40 -0.39 -1.57 16 29 C 0.13 2.19 6.62 -84.90 -0.56 1.63 16 30 N -0.42 -7.54 8.12 -7.78 -0.06 -7.60 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.13 2.74 5.71 -52.48 -0.30 2.44 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.10 1.77 6.00 -52.49 -0.32 1.46 16 36 H 0.13 2.49 8.05 -52.49 -0.42 2.07 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.15 1.54 7.72 -52.49 -0.41 1.13 16 39 H 0.42 1.29 9.11 45.56 0.42 1.70 16 40 H 0.16 2.01 5.15 -52.49 -0.27 1.74 16 41 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -32.76 374.04 -9.20 -41.97 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -3.25 Total: 10.29 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -6.47 Total: -25.78 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.70 Total: -31.15 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.79 Total: -15.99 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.76 -9.20 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033581525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.934 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds