Wall clock time and date at job start Tue Mar 31 2020 05:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31539 * 1 3 3 Si 1.86803 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47549 * 269.99949 * 3 2 1 5 5 H 1.48503 * 109.47205 * 30.00351 * 3 2 1 6 6 H 1.48501 * 109.47127 * 150.00004 * 3 2 1 7 7 C 1.38668 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34790 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.35567 * 116.99925 * 185.19993 * 9 7 2 11 11 C 1.38735 * 120.16903 * 5.92206 * 10 9 7 12 12 C 1.38107 * 120.09317 * 179.97438 * 11 10 9 13 13 C 1.38569 * 120.42767 * 359.97438 * 12 11 10 14 14 C 1.37835 * 120.33067 * 359.97438 * 13 12 11 15 15 C 1.39797 * 119.90247 * 0.02562 * 14 13 12 16 16 C 1.47105 * 120.20834 * 179.97438 * 15 14 13 17 17 C 1.34573 * 120.00004 * 36.21041 * 16 15 14 18 18 C 1.47103 * 120.00356 * 8.49151 * 17 16 15 19 19 C 1.40738 * 118.90844 * 228.10066 * 18 17 16 20 20 C 1.38637 * 119.37050 * 179.79102 * 19 18 17 21 21 C 1.47793 * 121.30710 * 180.23715 * 20 19 18 22 22 O 1.21455 * 119.99233 * 185.78167 * 21 20 19 23 23 O 1.34709 * 120.00329 * 5.78420 * 21 20 19 24 24 C 1.46442 * 117.37646 * 0.44139 * 20 19 18 25 25 C 1.39848 * 121.44921 * 179.81532 * 24 20 19 26 26 C 1.36388 * 119.61937 * 179.97438 * 25 24 20 27 27 C 1.39304 * 120.81724 * 359.97438 * 26 25 24 28 28 C 1.36108 * 121.07940 * 0.02783 * 27 26 25 29 29 C 1.40759 * 119.71771 * 359.95159 * 28 27 26 30 30 N 1.32005 * 118.89883 * 48.37011 * 18 17 16 31 31 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 32 32 H 1.08004 * 119.95622 * 359.97355 * 11 10 9 33 33 H 1.08000 * 119.78463 * 180.27537 * 12 11 10 34 34 H 1.07994 * 119.82983 * 180.02562 * 13 12 11 35 35 H 1.08002 * 120.04836 * 179.97438 * 14 13 12 36 36 H 1.07993 * 119.99790 * 216.20287 * 16 15 14 37 37 H 1.07998 * 119.99983 * 188.50187 * 17 16 15 38 38 H 1.07997 * 120.31732 * 0.02562 * 19 18 17 39 39 H 0.96699 * 117.00552 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.18917 * 0.02562 * 25 24 20 41 41 H 1.07996 * 119.59147 * 179.97438 * 26 25 24 42 42 H 1.08002 * 119.45799 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.14116 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 2.4970 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4402 0.7000 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3682 -0.0005 10 6 2.0689 -3.5027 0.1084 11 6 3.4355 -3.4297 0.3365 12 6 4.1817 -4.5864 0.4478 13 6 3.5748 -5.8269 0.3335 14 6 2.2182 -5.9199 0.1079 15 6 1.4495 -4.7579 -0.0070 16 6 0.0013 -4.8493 -0.2483 17 6 -0.7145 -5.8370 0.3201 18 6 -0.0923 -6.7110 1.3264 19 6 -0.2449 -8.1048 1.2047 20 6 0.3411 -8.9377 2.1453 21 6 0.2125 -10.4073 2.0560 22 8 0.6447 -11.1099 2.9475 23 8 -0.3839 -10.9675 0.9859 24 6 1.0886 -8.3038 3.2334 25 6 1.7104 -9.0624 4.2302 26 6 2.3976 -8.4331 5.2262 27 6 2.4884 -7.0435 5.2628 28 6 1.8952 -6.2753 4.3087 29 6 1.1777 -6.8893 3.2649 30 7 0.5861 -6.1617 2.3166 31 1 -0.4850 0.8401 -0.0004 32 1 3.9164 -2.4669 0.4272 33 1 5.2444 -4.5238 0.6298 34 1 4.1676 -6.7252 0.4225 35 1 1.7499 -6.8890 0.0192 36 1 -0.4874 -4.1237 -0.8815 37 1 -1.7458 -5.9880 0.0372 38 1 -0.8100 -8.5218 0.3842 39 1 -0.4442 -11.9326 0.9720 40 1 1.6476 -10.1404 4.2110 41 1 2.8773 -9.0194 5.9959 42 1 3.0386 -6.5681 6.0614 43 1 1.9756 -5.1992 4.3516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033581525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:03 Heat of formation + Delta-G solvation = -24.109632 kcal Electronic energy + Delta-G solvation = -31195.895409 eV Core-core repulsion = 26943.815517 eV Total energy + Delta-G solvation = -4252.079892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.115 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.10046 -40.95928 -40.60079 -38.75545 -37.86222 -37.17797 -35.17214 -34.38352 -34.26325 -31.72681 -31.14792 -30.74145 -29.63971 -27.31769 -26.81366 -24.86629 -24.33407 -23.48979 -23.00590 -22.32195 -20.75030 -19.83794 -19.41478 -19.00906 -18.64268 -18.11260 -17.68219 -16.88617 -16.75195 -16.43416 -16.32845 -16.03516 -15.76679 -15.58126 -15.43756 -15.33433 -15.16378 -14.71182 -14.50895 -14.29749 -14.20221 -13.90463 -13.55549 -13.28621 -13.04800 -12.84683 -12.71978 -12.66711 -12.53355 -12.42308 -12.29315 -12.14087 -12.06447 -11.74654 -11.55442 -11.22654 -10.91709 -10.77530 -10.43642 -9.78261 -9.52024 -9.14415 -8.63089 -8.45639 -6.11395 -1.09422 -0.34621 0.24180 0.53205 0.75970 1.28884 1.35420 1.44422 1.51917 1.63533 1.79000 2.05425 2.17671 2.87088 3.05463 3.17740 3.23229 3.34346 3.47324 3.64763 3.76169 3.91121 4.02380 4.09193 4.15555 4.20002 4.24710 4.33466 4.43689 4.52595 4.53273 4.60044 4.72577 4.77679 5.02971 5.03697 5.06205 5.12356 5.23692 5.31175 5.38632 5.39609 5.45273 5.49475 5.60606 5.72630 5.74620 5.84347 5.86682 6.04351 6.20947 6.87324 6.94006 6.99216 7.79697 8.76703 Molecular weight = 361.11amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.002876 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.101941 B = 9733.737708 C =10418.569614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.013 2.987 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.413 4.413 8 H 0.098 0.902 9 O -0.214 6.214 10 C 0.132 3.868 11 C -0.245 4.245 12 C -0.067 4.067 13 C -0.197 4.197 14 C -0.054 4.054 15 C -0.133 4.133 16 C -0.043 4.043 17 C -0.147 4.147 18 C 0.183 3.817 19 C -0.077 4.077 20 C -0.092 4.092 21 C 0.547 3.453 22 O -0.524 6.524 23 O -0.495 6.495 24 C -0.079 4.079 25 C -0.120 4.120 26 C -0.102 4.102 27 C -0.094 4.094 28 C -0.108 4.108 29 C 0.110 3.890 30 N -0.459 5.459 31 H 0.272 0.728 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.169 0.831 38 H 0.185 0.815 39 H 0.440 0.560 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -21.097 5.130 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.215 4.215 3 Si 0.833 3.167 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.489 4.489 8 H 0.115 0.885 9 O -0.120 6.120 10 C 0.081 3.919 11 C -0.265 4.265 12 C -0.085 4.085 13 C -0.216 4.216 14 C -0.072 4.072 15 C -0.134 4.134 16 C -0.063 4.063 17 C -0.165 4.165 18 C 0.031 3.969 19 C -0.097 4.097 20 C -0.101 4.101 21 C 0.392 3.608 22 O -0.415 6.415 23 O -0.309 6.309 24 C -0.081 4.081 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.114 4.114 28 C -0.127 4.127 29 C -0.011 4.011 30 N -0.168 5.168 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.158 0.842 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.187 0.813 38 H 0.203 0.797 39 H 0.303 0.697 40 H 0.178 0.822 41 H 0.180 0.820 42 H 0.176 0.824 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.337 -19.819 5.519 20.706 hybrid contribution 0.069 -0.050 -0.139 0.163 sum 2.406 -19.870 5.379 20.725 Atomic orbital electron populations 1.70164 1.07827 1.28701 1.48375 1.26469 0.96787 1.02396 0.95854 0.84660 0.77833 0.74964 0.79240 1.18774 1.19658 1.17925 1.21755 0.92358 0.81539 1.53260 0.88516 1.83883 1.35441 1.12192 1.80463 1.19944 0.91143 0.87377 0.93469 1.21223 0.93782 0.99874 1.11589 1.21112 0.99869 0.91369 0.96173 1.20882 0.94703 0.97599 1.08398 1.20975 0.93898 0.95567 0.96723 1.18319 0.94206 0.90186 1.10672 1.21993 0.92196 0.94784 0.97353 1.21949 1.00474 0.96783 0.97264 1.20241 0.92831 0.91317 0.92556 1.22900 0.96401 0.92231 0.98146 1.20351 1.02240 0.90429 0.97041 1.20228 0.73673 0.87720 0.79206 1.90743 1.46877 1.64009 1.39855 1.84509 1.72026 1.31986 1.42378 1.19700 0.99116 0.93327 0.95983 1.21784 0.96433 1.02217 0.93341 1.21448 0.97495 0.94469 0.98551 1.21270 0.97753 0.94153 0.98203 1.21012 0.97429 1.00654 0.93585 1.18979 0.98067 0.89118 0.94902 1.67985 1.06120 1.40982 1.01697 0.91869 0.86360 0.84229 0.84819 0.85960 0.86813 0.81340 0.79747 0.69684 0.82238 0.82036 0.82368 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.32 13.67 21.62 0.30 -55.03 16 2 C -0.02 -0.94 5.49 84.84 0.47 -0.48 16 3 Si 1.01 42.83 29.55 68.60 2.03 44.86 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.41 -23.94 9.44 67.92 0.64 -23.30 16 8 H 0.10 5.21 5.30 -2.91 -0.02 5.20 16 9 O -0.21 -12.71 9.21 -20.33 -0.19 -12.90 16 10 C 0.13 6.66 6.66 22.93 0.15 6.81 16 11 C -0.25 -11.05 9.12 22.36 0.20 -10.84 16 12 C -0.07 -2.46 10.03 22.32 0.22 -2.23 16 13 C -0.20 -6.80 10.02 22.25 0.22 -6.57 16 14 C -0.05 -1.97 7.51 22.55 0.17 -1.80 16 15 C -0.13 -5.73 4.89 -20.04 -0.10 -5.83 16 16 C -0.04 -1.71 9.37 23.76 0.22 -1.48 16 17 C -0.15 -4.56 9.71 23.76 0.23 -4.33 16 18 C 0.18 5.60 3.88 42.06 0.16 5.77 16 19 C -0.08 -1.78 8.97 22.98 0.21 -1.58 16 20 C -0.09 -2.21 6.07 -18.52 -0.11 -2.32 16 21 C 0.55 10.71 8.27 70.35 0.58 11.29 16 22 O -0.52 -12.03 14.48 19.98 0.29 -11.74 16 23 O -0.49 -5.81 12.81 -56.18 -0.72 -6.53 16 24 C -0.08 -2.19 5.90 -19.88 -0.12 -2.31 16 25 C -0.12 -2.84 9.30 22.23 0.21 -2.64 16 26 C -0.10 -2.00 9.97 22.09 0.22 -1.78 16 27 C -0.09 -2.04 9.94 22.03 0.22 -1.82 16 28 C -0.11 -3.19 9.99 22.39 0.22 -2.97 16 29 C 0.11 3.56 6.62 40.40 0.27 3.83 16 30 N -0.46 -16.59 8.12 -178.53 -1.45 -18.04 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.12 5.39 5.71 -2.91 -0.02 5.38 16 33 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 34 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.12 3.98 6.00 -2.91 -0.02 3.97 16 36 H 0.11 4.79 8.05 -2.91 -0.02 4.77 16 37 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 38 H 0.19 2.97 7.72 -2.91 -0.02 2.94 16 39 H 0.44 0.79 9.11 -74.06 -0.67 0.11 16 40 H 0.16 3.67 5.15 -2.91 -0.01 3.66 16 41 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 42 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -78.25 374.04 4.97 -73.27 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.42 Total: 30.68 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 4.29 Total: -44.58 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -1.15 Total: -73.07 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.62 Total: -31.17 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.25 4.97 -73.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033581525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.165 kcal (2) G-P(sol) polarization free energy of solvation -78.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds