Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35980 * 116.99919 * 2 1 4 4 C 1.38716 * 120.00224 * 0.03265 * 3 2 1 5 5 C 1.38114 * 119.99895 * 179.97438 * 4 3 2 6 6 C 1.38712 * 120.00242 * 359.78886 * 5 4 3 7 7 O 1.35984 * 120.00308 * 180.24863 * 6 5 4 8 8 C 1.42906 * 116.99621 * 0.21465 * 7 6 5 9 9 C 1.38680 * 119.99789 * 0.46392 * 6 5 4 10 10 C 1.50702 * 119.99827 * 179.78960 * 9 6 5 11 11 H 1.09000 * 109.67453 * 9.10633 * 10 9 6 12 12 C 1.53105 * 109.57726 * 248.78818 * 10 9 6 13 13 H 1.09004 * 109.45380 * 65.76232 * 12 10 9 14 14 C 1.52970 * 109.55848 * 305.72651 * 12 10 9 15 15 C 1.53020 * 109.40395 * 179.69462 * 14 12 10 16 16 C 1.52983 * 109.52695 * 59.85174 * 15 14 12 17 17 C 1.53014 * 109.53649 * 300.20412 * 16 15 14 18 18 C 1.53067 * 109.47761 * 185.75648 * 12 10 9 19 19 O 1.42901 * 109.55209 * 300.90050 * 18 12 10 20 20 C 1.53090 * 109.49875 * 61.06607 * 18 12 10 21 21 C 1.53165 * 109.36409 * 298.74725 * 20 18 12 22 22 N 1.46931 * 108.87467 * 54.72761 * 21 20 18 23 23 C 1.36937 * 120.66154 * 126.34232 * 22 21 20 24 24 H 1.08004 * 119.99681 * 216.93409 * 23 22 21 25 25 C 1.38806 * 120.00147 * 36.92859 * 23 22 21 26 26 N 1.31624 * 120.00024 * 8.95522 * 25 23 22 27 27 Si 1.86799 * 120.00143 * 188.95077 * 25 23 22 28 28 H 1.48499 * 109.47153 * 0.02562 * 27 25 23 29 29 H 1.48493 * 109.47349 * 120.00394 * 27 25 23 30 30 H 1.48500 * 109.47305 * 240.00356 * 27 25 23 31 31 C 1.38152 * 119.99858 * 359.51541 * 9 6 5 32 32 H 1.09006 * 109.46510 * 299.99338 * 1 2 3 33 33 H 1.08997 * 109.47444 * 59.99507 * 1 2 3 34 34 H 1.08998 * 109.46747 * 179.97438 * 1 2 3 35 35 H 1.07997 * 120.00159 * 359.97181 * 4 3 2 36 36 H 1.08002 * 119.99687 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.46930 * 299.99589 * 8 7 6 38 38 H 1.08998 * 109.47365 * 59.99661 * 8 7 6 39 39 H 1.09000 * 109.46550 * 179.97438 * 8 7 6 40 40 H 1.09003 * 109.48069 * 299.67228 * 14 12 10 41 41 H 1.09000 * 109.48883 * 59.69943 * 14 12 10 42 42 H 1.09005 * 109.46459 * 179.86394 * 15 14 12 43 43 H 1.09004 * 109.46314 * 299.84344 * 15 14 12 44 44 H 1.08999 * 109.46363 * 60.22184 * 16 15 14 45 45 H 1.08995 * 109.46317 * 180.18617 * 16 15 14 46 46 H 1.09003 * 109.48950 * 300.10665 * 17 16 15 47 47 H 1.08999 * 109.48693 * 180.02562 * 17 16 15 48 48 H 0.96701 * 113.99870 * 180.13091 * 19 18 12 49 49 H 1.08997 * 109.49070 * 178.77544 * 20 18 12 50 50 H 1.09007 * 109.50424 * 58.72326 * 20 18 12 51 51 H 1.08999 * 109.59025 * 174.58801 * 21 20 18 52 52 H 1.09006 * 109.58748 * 294.86925 * 21 20 18 53 53 H 0.96994 * 119.99949 * 179.97438 * 26 25 23 54 54 H 1.08002 * 119.99746 * 180.23608 * 31 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2909 2.3750 0.0007 5 6 1.9179 3.6056 0.0012 6 6 3.3031 3.6782 0.0055 7 8 3.9205 4.8897 0.0111 8 6 3.0805 6.0458 0.0171 9 6 4.0584 2.5151 -0.0005 10 6 5.5634 2.5940 -0.0006 11 1 5.8769 3.6244 0.1668 12 6 6.1025 2.1062 -1.3480 13 1 5.7901 2.7935 -2.1343 14 6 5.5534 0.7095 -1.6440 15 6 6.0883 0.2287 -2.9947 16 6 7.6168 0.1807 -2.9516 17 6 8.1644 1.5775 -2.6511 18 6 7.6313 2.0511 -1.2963 19 8 8.1470 3.3506 -1.0007 20 6 8.0706 1.0662 -0.2097 21 6 7.5557 1.5475 1.1502 22 7 6.1014 1.7394 1.0670 23 6 5.2643 1.1310 1.9638 24 1 4.3054 0.7553 1.6384 25 6 5.6482 0.9969 3.2910 26 7 6.7307 1.6051 3.7276 27 14 4.6284 -0.0466 4.4574 28 1 3.4701 -0.6190 3.7254 29 1 5.4657 -1.1479 4.9969 30 1 4.1389 0.7971 5.5771 31 6 3.4312 1.2842 -0.0006 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2124 2.3185 0.0008 36 1 1.3297 4.5113 0.0022 37 1 2.4510 6.0421 -0.8727 38 1 2.4516 6.0334 0.9072 39 1 3.6984 6.9438 0.0217 40 1 5.8710 0.0207 -0.8612 41 1 4.4645 0.7461 -1.6763 42 1 5.6995 -0.7676 -3.2055 43 1 5.7686 0.9165 -3.7776 44 1 7.9366 -0.5102 -2.1716 45 1 7.9968 -0.1587 -3.9151 46 1 7.8436 2.2692 -3.4301 47 1 9.2534 1.5425 -2.6211 48 1 9.1121 3.3896 -0.9545 49 1 9.1590 1.0107 -0.1876 50 1 7.6605 0.0796 -0.4254 51 1 7.7831 0.8017 1.9119 52 1 8.0349 2.4918 1.4090 53 1 6.9988 1.5117 4.6551 54 1 4.0194 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033652719.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -83.475578 kcal Electronic energy + Delta-G solvation = -36565.647319 eV Core-core repulsion = 32275.350397 eV Total energy + Delta-G solvation = -4290.296923 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.01506 -40.82458 -39.76858 -37.84648 -36.58471 -36.35772 -34.14315 -33.11345 -31.17583 -30.84227 -30.76374 -29.53438 -28.07747 -27.65077 -27.13509 -24.76102 -23.60993 -23.24060 -23.12306 -22.17749 -21.15332 -19.45718 -19.30843 -18.41095 -17.94487 -17.64858 -17.16253 -16.91841 -16.57253 -16.33062 -16.29866 -15.95308 -15.78565 -15.57822 -15.32052 -15.04625 -14.78187 -14.49814 -14.31330 -13.87986 -13.83575 -13.59250 -13.52916 -13.45109 -13.24806 -13.01887 -12.91446 -12.75166 -12.67435 -12.42966 -12.37309 -12.22579 -12.16463 -12.08332 -11.83839 -11.79655 -11.67070 -11.55262 -11.23703 -11.13184 -11.09320 -10.54377 -10.43489 -10.33065 -9.44861 -8.57542 -8.35428 -7.76877 -5.29953 0.40918 0.62797 1.40455 1.42995 1.53297 2.47073 2.52324 2.62392 2.83679 3.37129 3.41346 3.67806 3.83782 3.84966 3.93684 4.00241 4.09512 4.28454 4.31505 4.33786 4.36739 4.41009 4.43612 4.44257 4.46426 4.52351 4.61886 4.62372 4.70026 4.72462 4.74483 4.77345 4.82800 4.91724 4.97321 5.05736 5.08307 5.09960 5.13093 5.21508 5.32812 5.36843 5.39917 5.43398 5.46010 5.51284 5.54711 5.62459 5.69007 5.80859 5.84740 5.91640 6.50054 6.54307 6.70642 7.05416 7.28930 7.95144 8.54258 9.29010 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007277 B = 0.005651 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3846.650202 B = 4953.334185 C = 5973.569918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.065 3.935 4 C -0.169 4.169 5 C -0.176 4.176 6 C 0.079 3.921 7 O -0.339 6.339 8 C 0.021 3.979 9 C -0.072 4.072 10 C 0.227 3.773 11 H 0.013 0.987 12 C -0.066 4.066 13 H 0.058 0.942 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.146 3.854 19 O -0.574 6.574 20 C -0.157 4.157 21 C 0.193 3.807 22 N -0.589 5.589 23 C -0.248 4.248 24 H 0.084 0.916 25 C -0.046 4.046 26 N -0.936 5.936 27 Si 0.946 3.054 28 H -0.267 1.267 29 H -0.290 1.290 30 H -0.298 1.298 31 C -0.087 4.087 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.381 0.619 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.042 0.958 52 H -0.010 1.010 53 H 0.244 0.756 54 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.595 0.857 -15.196 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.021 3.979 4 C -0.187 4.187 5 C -0.194 4.194 6 C 0.034 3.966 7 O -0.254 6.254 8 C -0.073 4.073 9 C -0.073 4.073 10 C 0.121 3.879 11 H 0.031 0.969 12 C -0.086 4.086 13 H 0.076 0.924 14 C -0.149 4.149 15 C -0.153 4.153 16 C -0.151 4.151 17 C -0.170 4.170 18 C 0.106 3.894 19 O -0.381 6.381 20 C -0.196 4.196 21 C 0.068 3.932 22 N -0.312 5.312 23 C -0.378 4.378 24 H 0.101 0.899 25 C -0.241 4.241 26 N -0.582 5.582 27 Si 0.775 3.225 28 H -0.191 1.191 29 H -0.216 1.216 30 H -0.225 1.225 31 C -0.106 4.106 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.229 0.771 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.061 0.939 52 H 0.008 0.992 53 H 0.053 0.947 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.894 0.861 -15.033 17.002 hybrid contribution 0.058 -0.043 1.633 1.635 sum -7.835 0.818 -13.400 15.544 Atomic orbital electron populations 1.23288 0.76892 1.05243 1.02029 1.86050 1.23150 1.26619 1.89601 1.18964 0.91953 0.85145 1.01859 1.21186 1.00853 0.90792 1.05897 1.21146 0.92044 0.99496 1.06754 1.18932 0.91697 0.85224 1.00716 1.86138 1.36941 1.13001 1.89299 1.23258 0.96175 0.85925 1.01978 1.19087 0.95735 0.90421 1.02084 1.19132 0.87311 0.92485 0.88923 0.96934 1.21250 0.93461 0.97556 0.96320 0.92406 1.21854 1.00298 0.95015 0.97746 1.21572 0.95945 1.01444 0.96307 1.21534 0.95295 0.96058 1.02249 1.22175 1.00949 0.97815 0.96072 1.21061 0.93036 0.82070 0.93214 1.86572 1.26514 1.30874 1.94113 1.22790 1.00030 0.99872 0.96895 1.20320 0.83156 0.96284 0.93479 1.44048 1.01885 1.53826 1.31443 1.19941 1.01171 1.28836 0.87881 0.89858 1.25939 0.98987 1.00839 0.98344 1.70167 1.27199 1.46249 1.14601 0.85504 0.79112 0.78442 0.79442 1.19096 1.21635 1.22536 1.20247 0.91600 0.97751 1.00955 0.92459 0.91209 0.86640 0.82423 0.82630 0.90986 0.92469 0.87237 0.92424 0.91537 0.90955 0.91714 0.92077 0.89892 0.91427 0.90401 0.77091 0.91278 0.90935 0.93922 0.99195 0.94699 0.84904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 16 2 O -0.34 -11.03 10.50 -93.32 -0.98 -12.01 16 3 C 0.07 2.33 6.68 22.49 0.15 2.48 16 4 C -0.17 -5.05 9.03 22.35 0.20 -4.85 16 5 C -0.18 -5.49 9.03 22.35 0.20 -5.29 16 6 C 0.08 3.12 6.66 22.49 0.15 3.27 16 7 O -0.34 -13.04 9.29 -93.37 -0.87 -13.91 16 8 C 0.02 0.53 9.81 113.37 1.11 1.64 16 9 C -0.07 -3.13 4.12 -19.78 -0.08 -3.21 16 10 C 0.23 10.58 2.60 44.19 0.11 10.70 16 11 H 0.01 0.70 6.75 -2.39 -0.02 0.68 16 12 C -0.07 -2.50 1.79 -10.75 -0.02 -2.52 16 13 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 14 C -0.11 -3.82 3.33 30.59 0.10 -3.72 16 15 C -0.12 -2.98 5.92 30.60 0.18 -2.80 16 16 C -0.11 -2.68 5.64 30.59 0.17 -2.51 16 17 C -0.13 -3.39 5.10 30.63 0.16 -3.24 16 18 C 0.15 5.02 0.74 -10.71 -0.01 5.01 16 19 O -0.57 -20.90 11.79 -148.98 -1.76 -22.66 16 20 C -0.16 -5.93 4.35 30.68 0.13 -5.80 16 21 C 0.19 9.71 4.98 86.35 0.43 10.14 16 22 N -0.59 -30.58 2.42 -679.50 -1.64 -32.22 16 23 C -0.25 -13.90 8.12 84.03 0.68 -13.22 16 24 H 0.08 4.60 4.05 -2.91 -0.01 4.58 16 25 C -0.05 -2.68 5.06 84.86 0.43 -2.25 16 26 N -0.94 -57.96 11.39 21.65 0.25 -57.71 16 27 Si 0.95 47.35 29.56 68.60 2.03 49.37 16 28 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 29 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 30 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 31 C -0.09 -3.59 4.33 22.35 0.10 -3.49 16 32 H 0.06 1.10 7.66 -2.38 -0.02 1.08 16 33 H 0.07 1.14 7.66 -2.39 -0.02 1.12 16 34 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.16 3.44 6.29 -2.91 -0.02 3.42 16 36 H 0.16 3.67 6.29 -2.91 -0.02 3.65 16 37 H 0.07 1.43 7.65 -2.39 -0.02 1.41 16 38 H 0.06 1.33 7.67 -2.39 -0.02 1.31 16 39 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.24 5.62 -2.39 -0.01 2.23 16 41 H 0.07 2.36 4.99 -2.39 -0.01 2.35 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 1.53 6.40 -2.39 -0.02 1.52 16 45 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.38 10.57 9.05 -74.06 -0.67 9.90 16 49 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.07 2.73 4.73 -2.38 -0.01 2.72 16 51 H 0.04 2.40 6.50 -2.39 -0.02 2.38 16 52 H -0.01 -0.56 7.82 -2.38 -0.02 -0.58 16 53 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 54 H 0.13 5.87 4.87 -2.91 -0.01 5.86 16 Total: -1.00 -75.80 388.98 2.61 -73.19 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: 0.27 Total: 34.08 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 5.32 Total: -18.13 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.40 Total: -89.93 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -3.60 Total: -48.58 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.37 kcal Total: -75.80 2.61 -73.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033652719.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.284 kcal (2) G-P(sol) polarization free energy of solvation -75.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds