Wall clock time and date at job start Tue Mar 31 2020 05:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35980 * 117.00140 * 2 1 4 4 C 1.38724 * 119.99940 * 0.02562 * 3 2 1 5 5 C 1.38106 * 119.99942 * 179.97438 * 4 3 2 6 6 C 1.38723 * 119.99920 * 359.78283 * 5 4 3 7 7 O 1.35984 * 120.00021 * 180.25087 * 6 5 4 8 8 C 1.42901 * 116.99863 * 0.22102 * 7 6 5 9 9 C 1.38681 * 119.99992 * 0.47006 * 6 5 4 10 10 C 1.50699 * 119.99721 * 179.78570 * 9 6 5 11 11 H 1.09001 * 109.57624 * 288.31517 * 10 9 6 12 12 C 1.53112 * 109.57729 * 48.58241 * 10 9 6 13 13 H 1.09006 * 109.50328 * 305.40794 * 12 10 9 14 14 C 1.52985 * 109.53774 * 185.33736 * 12 10 9 15 15 C 1.53021 * 109.39686 * 179.72194 * 14 12 10 16 16 C 1.52974 * 109.54148 * 59.83819 * 15 14 12 17 17 C 1.53712 * 109.73140 * 300.22817 * 16 15 14 18 18 C 1.53085 * 109.45798 * 65.42754 * 12 10 9 19 19 O 1.42898 * 109.56113 * 300.96513 * 18 12 10 20 20 C 1.53101 * 109.47314 * 61.13704 * 18 12 10 21 21 C 1.53171 * 109.37799 * 299.05748 * 20 18 12 22 22 N 1.46316 * 109.08544 * 54.39225 * 21 20 18 23 23 C 1.36941 * 120.54241 * 126.46024 * 22 21 20 24 24 H 1.07999 * 119.99727 * 207.87689 * 23 22 21 25 25 C 1.38805 * 120.00169 * 27.88269 * 23 22 21 26 26 N 1.31618 * 120.00389 * 17.17988 * 25 23 22 27 27 Si 1.86804 * 119.99767 * 197.18480 * 25 23 22 28 28 H 1.48497 * 109.47425 * 359.97438 * 27 25 23 29 29 H 1.48509 * 109.47112 * 119.99794 * 27 25 23 30 30 H 1.48495 * 109.47278 * 239.99582 * 27 25 23 31 31 C 1.38152 * 119.99769 * 359.51322 * 9 6 5 32 32 H 1.09000 * 109.46889 * 60.00178 * 1 2 3 33 33 H 1.08998 * 109.47464 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47237 * 300.00487 * 1 2 3 35 35 H 1.08001 * 120.00018 * 359.97438 * 4 3 2 36 36 H 1.07993 * 120.00363 * 180.02562 * 5 4 3 37 37 H 1.09000 * 109.46823 * 299.98924 * 8 7 6 38 38 H 1.08996 * 109.47194 * 59.99629 * 8 7 6 39 39 H 1.09006 * 109.46631 * 179.97438 * 8 7 6 40 40 H 1.08992 * 109.48223 * 299.69813 * 14 12 10 41 41 H 1.09004 * 109.48118 * 59.72973 * 14 12 10 42 42 H 1.09007 * 109.45428 * 179.85842 * 15 14 12 43 43 H 1.08999 * 109.46199 * 299.82711 * 15 14 12 44 44 H 1.08996 * 109.46490 * 60.24795 * 16 15 14 45 45 H 1.09004 * 109.45810 * 180.22169 * 16 15 14 46 46 H 1.09007 * 109.39221 * 300.17606 * 17 16 15 47 47 H 1.09001 * 109.96002 * 179.87498 * 17 16 15 48 48 H 0.96702 * 114.00240 * 180.11128 * 19 18 12 49 49 H 1.09002 * 109.48519 * 59.03071 * 20 18 12 50 50 H 1.09002 * 109.49278 * 179.07210 * 20 18 12 51 51 H 1.08999 * 109.58572 * 174.58342 * 21 20 18 52 52 H 1.09001 * 109.58452 * 295.01500 * 21 20 18 53 53 H 0.96995 * 120.00147 * 180.02562 * 26 25 23 54 54 H 1.07993 * 119.99844 * 180.27632 * 31 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2909 2.3750 0.0005 5 6 1.9179 3.6055 0.0011 6 6 3.3032 3.6781 0.0056 7 8 3.9206 4.8897 0.0113 8 6 3.0807 6.0458 0.0172 9 6 4.0585 2.5150 -0.0002 10 6 5.5634 2.5939 -0.0001 11 1 5.9110 2.9401 -0.9735 12 6 6.0260 3.5685 1.0864 13 1 5.5359 4.5317 0.9439 14 6 7.5426 3.7499 0.9990 15 6 8.0004 4.7296 2.0816 16 6 7.6278 4.1802 3.4597 17 6 6.1048 3.9922 3.5490 18 6 5.6601 3.0084 2.4632 19 8 4.2462 2.8165 2.5414 20 6 6.3717 1.6694 2.6751 21 6 5.9152 0.6760 1.6023 22 7 6.1284 1.2671 0.2810 23 6 6.8454 0.5967 -0.6738 24 1 7.3801 1.1475 -1.4335 25 6 6.8848 -0.7908 -0.6655 26 7 5.9909 -1.4704 0.0210 27 14 8.2067 -1.6934 -1.6285 28 1 9.0827 -0.7073 -2.3106 29 1 9.0195 -2.5188 -0.6993 30 1 7.5685 -2.5718 -2.6415 31 6 3.4312 1.2841 -0.0004 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 0.2123 2.3185 0.0005 36 1 1.3298 4.5113 0.0019 37 1 2.4513 6.0421 -0.8728 38 1 2.4516 6.0334 0.9072 39 1 3.6986 6.9437 0.0218 40 1 8.0329 2.7880 1.1483 41 1 7.8056 4.1436 0.0172 42 1 9.0813 4.8576 2.0218 43 1 7.5119 5.6922 1.9304 44 1 8.1199 3.2198 3.6131 45 1 7.9510 4.8809 4.2296 46 1 5.6120 4.9521 3.3940 47 1 5.8352 3.5986 4.5290 48 1 3.9434 2.4644 3.3896 49 1 7.4495 1.8148 2.6011 50 1 6.1245 1.2783 3.6620 51 1 6.4894 -0.2463 1.6905 52 1 4.8541 0.4621 1.7303 53 1 6.0186 -2.4400 0.0271 54 1 4.0194 0.3784 -0.0004 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033652720.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:17 Heat of formation + Delta-G solvation = -82.960852 kcal Electronic energy + Delta-G solvation = -37026.523116 eV Core-core repulsion = 32736.248514 eV Total energy + Delta-G solvation = -4290.274603 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.88222 -40.60507 -39.61586 -37.59289 -36.52640 -36.24522 -34.10533 -32.65809 -31.46295 -30.88528 -30.43005 -29.42682 -28.11636 -27.55599 -26.65042 -24.82990 -23.42420 -23.01191 -22.68617 -22.55785 -21.06319 -19.52057 -18.76602 -18.44430 -18.21163 -17.43084 -16.98228 -16.72823 -16.52710 -16.27400 -16.19126 -15.93123 -15.64467 -15.45045 -15.10304 -14.93542 -14.63185 -14.41705 -14.19900 -13.91885 -13.67666 -13.51027 -13.43796 -13.17769 -13.08430 -12.98896 -12.93215 -12.74222 -12.63601 -12.36992 -12.28810 -12.23621 -12.06755 -12.00856 -11.77252 -11.68853 -11.56317 -11.38412 -11.17430 -11.07479 -10.91669 -10.64068 -10.42836 -10.22187 -9.32663 -8.56237 -8.31500 -7.76803 -5.20831 0.65818 0.84280 1.45396 1.48181 1.57381 2.54804 2.58945 2.73870 3.08813 3.35324 3.50545 3.74635 3.91094 3.96667 4.02574 4.11874 4.19044 4.35667 4.36531 4.42561 4.43869 4.44755 4.48253 4.54858 4.56254 4.63731 4.70593 4.72202 4.77382 4.80778 4.84734 4.86680 4.97187 5.00571 5.04462 5.12459 5.15529 5.23814 5.25201 5.32556 5.42146 5.45582 5.49229 5.55838 5.58554 5.59095 5.69096 5.71354 5.75062 5.82877 5.96875 6.16839 6.49745 6.66332 6.87810 7.13013 7.26776 7.98986 8.50777 9.26746 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007240 B = 0.006481 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3866.271456 B = 4319.384318 C = 6750.300139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.351 6.351 3 C 0.065 3.935 4 C -0.181 4.181 5 C -0.176 4.176 6 C 0.105 3.895 7 O -0.322 6.322 8 C 0.019 3.981 9 C -0.055 4.055 10 C 0.216 3.784 11 H 0.044 0.956 12 C -0.069 4.069 13 H 0.099 0.901 14 C -0.107 4.107 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.131 4.131 18 C 0.154 3.846 19 O -0.552 6.552 20 C -0.160 4.160 21 C 0.186 3.814 22 N -0.580 5.580 23 C -0.253 4.253 24 H 0.058 0.942 25 C -0.042 4.042 26 N -0.922 5.922 27 Si 0.955 3.045 28 H -0.270 1.270 29 H -0.292 1.292 30 H -0.298 1.298 31 C -0.112 4.112 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.146 0.854 36 H 0.151 0.849 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.367 0.633 49 H 0.064 0.936 50 H 0.057 0.943 51 H 0.043 0.957 52 H 0.005 0.995 53 H 0.246 0.754 54 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 15.659 6.525 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.266 6.266 3 C 0.021 3.979 4 C -0.199 4.199 5 C -0.195 4.195 6 C 0.060 3.940 7 O -0.237 6.237 8 C -0.076 4.076 9 C -0.058 4.058 10 C 0.109 3.891 11 H 0.062 0.938 12 C -0.088 4.088 13 H 0.116 0.884 14 C -0.144 4.144 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.169 4.169 18 C 0.113 3.887 19 O -0.358 6.358 20 C -0.199 4.199 21 C 0.060 3.940 22 N -0.301 5.301 23 C -0.383 4.383 24 H 0.076 0.924 25 C -0.238 4.238 26 N -0.568 5.568 27 Si 0.784 3.216 28 H -0.194 1.194 29 H -0.219 1.219 30 H -0.226 1.226 31 C -0.131 4.131 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.082 0.918 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.214 0.786 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.062 0.938 52 H 0.023 0.977 53 H 0.055 0.945 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.066 15.576 5.912 18.096 hybrid contribution 0.112 -1.549 -0.167 1.562 sum -6.954 14.027 5.745 16.677 Atomic orbital electron populations 1.23200 0.77277 1.04719 1.01838 1.86106 1.22930 1.27821 1.89789 1.19073 0.92150 0.84670 1.01979 1.21012 1.00080 0.91057 1.07779 1.21040 0.92787 0.98515 1.07131 1.18534 0.90827 0.84793 0.99843 1.86092 1.35870 1.12526 1.89200 1.23224 0.96377 0.86426 1.01556 1.19682 0.97130 0.89583 0.99416 1.19415 0.87124 0.86634 0.95900 0.93770 1.21474 0.95756 0.98917 0.92678 0.88376 1.21495 0.94651 0.99561 0.98713 1.21495 1.00861 0.98333 0.94045 1.21635 0.95009 1.01184 0.97356 1.22283 0.96816 0.99569 0.98182 1.20934 0.80364 0.92499 0.94900 1.86741 1.21963 1.87267 1.39788 1.22813 1.00878 0.97624 0.98625 1.20379 0.96652 0.93842 0.83097 1.43914 1.60142 1.16345 1.09667 1.19397 1.21539 0.88822 1.08553 0.92381 1.25594 0.99746 0.97575 1.00915 1.70168 1.34669 1.05519 1.46417 0.85397 0.79676 0.78532 0.77972 1.19436 1.21879 1.22582 1.20491 0.91711 0.99002 1.01873 0.92028 0.87336 0.91820 0.83599 0.83146 0.92426 0.92301 0.86812 0.93067 0.92975 0.91321 0.91249 0.92718 0.90269 0.91287 0.91213 0.78624 0.91744 0.92414 0.93830 0.97715 0.94512 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.81 113.37 1.11 1.74 16 2 O -0.35 -14.21 10.50 -93.32 -0.98 -15.19 16 3 C 0.07 2.70 6.69 22.49 0.15 2.85 16 4 C -0.18 -5.89 9.03 22.35 0.20 -5.69 16 5 C -0.18 -5.41 9.03 22.35 0.20 -5.21 16 6 C 0.11 3.73 5.53 22.49 0.12 3.85 16 7 O -0.32 -9.85 7.21 -93.38 -0.67 -10.52 16 8 C 0.02 0.37 9.81 113.37 1.11 1.48 16 9 C -0.06 -2.37 3.27 -19.78 -0.06 -2.43 16 10 C 0.22 9.55 2.29 44.20 0.10 9.65 16 11 H 0.04 2.11 7.93 -2.39 -0.02 2.09 16 12 C -0.07 -2.45 1.57 -10.73 -0.02 -2.46 16 13 H 0.10 3.38 5.11 -2.38 -0.01 3.37 16 14 C -0.11 -3.55 4.82 30.60 0.15 -3.40 16 15 C -0.11 -2.74 5.93 30.59 0.18 -2.56 16 16 C -0.11 -2.69 5.65 30.83 0.17 -2.52 16 17 C -0.13 -3.29 5.15 30.87 0.16 -3.13 16 18 C 0.15 5.02 0.73 -10.69 -0.01 5.01 16 19 O -0.55 -18.80 9.10 -148.98 -1.36 -20.15 16 20 C -0.16 -6.09 4.35 30.69 0.13 -5.96 16 21 C 0.19 9.11 4.27 86.47 0.37 9.48 16 22 N -0.58 -29.03 1.16 -681.12 -0.79 -29.82 16 23 C -0.25 -14.08 9.58 84.03 0.81 -13.28 16 24 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 25 C -0.04 -2.40 4.91 84.86 0.42 -1.98 16 26 N -0.92 -55.21 10.98 21.65 0.24 -54.97 16 27 Si 0.95 46.38 29.59 68.60 2.03 48.41 16 28 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 30 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 31 C -0.11 -5.36 7.87 22.35 0.18 -5.18 16 32 H 0.06 1.39 7.66 -2.39 -0.02 1.37 16 33 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 35 H 0.15 3.69 6.29 -2.91 -0.02 3.67 16 36 H 0.15 3.45 6.29 -2.91 -0.02 3.43 16 37 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 38 H 0.06 1.04 7.67 -2.39 -0.02 1.02 16 39 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.05 2.00 5.97 -2.39 -0.01 1.98 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.43 6.39 -2.39 -0.02 1.41 16 45 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.37 10.42 9.05 -74.06 -0.67 9.75 16 49 H 0.06 2.49 4.71 -2.39 -0.01 2.48 16 50 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.04 2.45 6.02 -2.39 -0.01 2.44 16 52 H 0.00 0.26 5.71 -2.39 -0.01 0.25 16 53 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 54 H 0.12 7.07 5.78 -2.91 -0.02 7.05 16 Total: -1.00 -70.46 389.53 4.20 -66.26 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.26 Total: 35.74 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: 5.48 Total: -19.74 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -0.55 Total: -84.79 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -3.01 Total: -45.86 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -70.46 4.20 -66.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033652720.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.703 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds