Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99767 * 2 1 4 4 C 1.38719 * 120.00328 * 0.02562 * 3 2 1 5 5 C 1.38107 * 119.99906 * 179.97438 * 4 3 2 6 6 C 1.38720 * 120.00144 * 359.78995 * 5 4 3 7 7 O 1.35986 * 119.99900 * 180.24873 * 6 5 4 8 8 C 1.42901 * 116.99870 * 0.21487 * 7 6 5 9 9 C 1.38671 * 119.99801 * 0.46542 * 6 5 4 10 10 C 1.50706 * 120.00041 * 179.79070 * 9 6 5 11 11 H 1.09000 * 109.56817 * 318.14317 * 10 9 6 12 12 C 1.53242 * 109.57590 * 197.89515 * 10 9 6 13 13 H 1.09004 * 109.74975 * 305.80731 * 12 10 9 14 14 C 1.53028 * 109.12851 * 65.84849 * 12 10 9 15 15 C 1.52971 * 109.56647 * 179.50749 * 14 12 10 16 16 C 1.53013 * 109.38448 * 299.89566 * 15 14 12 17 17 C 1.52969 * 109.40008 * 60.17524 * 16 15 14 18 18 C 1.53035 * 109.57844 * 299.90663 * 17 16 15 19 19 O 1.42906 * 109.49668 * 299.73177 * 18 17 16 20 20 C 1.53106 * 109.28406 * 179.79710 * 18 17 16 21 21 C 1.52927 * 109.50607 * 178.82520 * 20 18 17 22 22 N 1.46890 * 109.57412 * 78.52493 * 10 9 6 23 23 C 1.36945 * 120.66522 * 353.47675 * 22 10 9 24 24 H 1.08003 * 119.99877 * 29.92680 * 23 22 10 25 25 C 1.38810 * 119.99758 * 209.91963 * 23 22 10 26 26 N 1.31618 * 120.00467 * 15.26494 * 25 23 22 27 27 Si 1.86797 * 119.99886 * 195.25860 * 25 23 22 28 28 H 1.48506 * 109.47098 * 90.00223 * 27 25 23 29 29 H 1.48498 * 109.47310 * 210.00531 * 27 25 23 30 30 H 1.48502 * 109.47126 * 330.00500 * 27 25 23 31 31 C 1.38155 * 119.99945 * 359.51162 * 9 6 5 32 32 H 1.08997 * 109.47491 * 299.99911 * 1 2 3 33 33 H 1.09002 * 109.47098 * 60.00186 * 1 2 3 34 34 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 35 35 H 1.07997 * 119.99807 * 359.97438 * 4 3 2 36 36 H 1.08006 * 119.99990 * 180.02562 * 5 4 3 37 37 H 1.08993 * 109.47063 * 299.99871 * 8 7 6 38 38 H 1.09002 * 109.46818 * 60.00300 * 8 7 6 39 39 H 1.09004 * 109.46398 * 179.97438 * 8 7 6 40 40 H 1.08998 * 109.46028 * 299.54024 * 14 12 10 41 41 H 1.09001 * 109.45045 * 59.50406 * 14 12 10 42 42 H 1.09001 * 109.48558 * 59.86776 * 15 14 12 43 43 H 1.09005 * 109.48457 * 179.97438 * 15 14 12 44 44 H 1.09002 * 109.48609 * 180.15556 * 16 15 14 45 45 H 1.09000 * 109.48946 * 300.18459 * 16 15 14 46 46 H 1.08998 * 109.36781 * 179.97438 * 17 16 15 47 47 H 1.09002 * 109.53941 * 59.98901 * 17 16 15 48 48 H 0.96698 * 113.99813 * 300.08425 * 19 18 17 49 49 H 1.09002 * 109.48329 * 298.79984 * 20 18 17 50 50 H 1.09004 * 109.48723 * 58.85117 * 20 18 17 51 51 H 1.08998 * 109.53423 * 294.92055 * 21 20 18 52 52 H 1.09002 * 109.76030 * 174.54876 * 21 20 18 53 53 H 0.96999 * 120.00315 * 179.97438 * 26 25 23 54 54 H 1.08006 * 120.00052 * 180.23162 * 31 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3751 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3032 3.6782 0.0055 7 8 3.9205 4.8898 0.0111 8 6 3.0805 6.0458 0.0170 9 6 4.0584 2.5152 -0.0004 10 6 5.5634 2.5940 -0.0004 11 1 5.8878 3.3803 -0.6819 12 6 6.1479 1.2509 -0.4508 13 1 5.7472 0.4485 0.1687 14 6 5.7709 1.0052 -1.9134 15 6 6.3601 -0.3281 -2.3773 16 6 7.8839 -0.2829 -2.2463 17 6 8.2613 -0.0419 -0.7837 18 6 7.6717 1.2902 -0.3148 19 8 8.1949 2.3517 -1.1158 20 6 8.0491 1.5222 1.1508 21 6 7.4870 2.8662 1.6162 22 7 6.0408 2.8880 1.3573 23 6 5.1557 3.1773 2.3615 24 1 4.1636 2.7509 2.3463 25 6 5.5339 4.0184 3.3989 26 7 6.6075 4.7703 3.2786 27 14 4.5191 4.0833 4.9659 28 1 5.0299 3.0746 5.9286 29 1 4.6219 5.4375 5.5665 30 1 3.0985 3.7893 4.6481 31 6 3.4312 1.2842 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2123 2.3185 0.0005 36 1 1.3296 4.5114 0.0019 37 1 2.4510 6.0420 -0.8728 38 1 2.4516 6.0334 0.9072 39 1 3.6984 6.9438 0.0215 40 1 4.6855 0.9752 -2.0085 41 1 6.1673 1.8113 -2.5308 42 1 5.9658 -1.1346 -1.7590 43 1 6.0904 -0.5020 -3.4190 44 1 8.3057 -1.2313 -2.5791 45 1 8.2780 0.5259 -2.8616 46 1 9.3469 -0.0102 -0.6909 47 1 7.8673 -0.8501 -0.1675 48 1 9.1575 2.4356 -1.0776 49 1 7.6328 0.7231 1.7643 50 1 9.1346 1.5293 1.2501 51 1 7.9693 3.6734 1.0651 52 1 7.6693 2.9922 2.6835 53 1 6.8715 5.3583 4.0035 54 1 4.0194 0.3784 -0.0013 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033652721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = -95.232964 kcal Electronic energy + Delta-G solvation = -36398.893279 eV Core-core repulsion = 32108.086518 eV Total energy + Delta-G solvation = -4290.806761 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.209 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.81907 -40.71486 -39.72553 -37.68930 -36.86338 -35.98170 -34.15740 -33.25745 -31.32746 -31.13460 -30.56080 -29.32473 -28.05374 -27.62997 -26.95119 -24.71191 -23.58430 -23.43666 -22.82288 -21.72827 -20.70899 -20.54262 -19.10349 -18.47956 -17.97639 -17.61005 -16.97867 -16.85052 -16.52701 -16.29141 -16.24141 -15.93403 -15.60041 -15.54068 -15.30838 -15.20244 -14.77515 -14.55526 -14.33837 -13.99433 -13.73439 -13.63734 -13.56088 -13.40287 -13.03387 -13.00673 -12.83710 -12.63203 -12.58268 -12.47972 -12.34266 -12.25447 -12.19274 -12.16462 -11.88166 -11.73783 -11.61010 -11.53492 -11.37086 -11.23941 -11.13283 -10.58955 -10.41328 -10.30822 -9.70205 -8.54426 -8.40499 -7.73860 -5.17245 0.38522 0.65744 1.40487 1.42456 1.49769 2.46312 2.54167 2.68864 2.87182 3.38899 3.50267 3.73645 3.81268 3.88104 3.92814 3.99109 4.02196 4.24394 4.26920 4.29327 4.39437 4.41663 4.43738 4.46568 4.53406 4.55719 4.61958 4.64550 4.66368 4.71237 4.76777 4.77782 4.80632 4.91974 4.95178 4.97966 5.05851 5.13161 5.14198 5.21848 5.34060 5.37664 5.38222 5.42219 5.46917 5.53410 5.56104 5.60463 5.72110 5.75678 5.82417 5.92815 6.51054 6.52615 6.77432 7.09238 7.28352 7.98810 8.53548 9.32526 Molecular weight = 361.21amu Principal moments of inertia in cm(-1) A = 0.007092 B = 0.006145 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3947.014228 B = 4555.173967 C = 6766.591757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.077 3.923 4 C -0.172 4.172 5 C -0.183 4.183 6 C 0.100 3.900 7 O -0.324 6.324 8 C 0.027 3.973 9 C -0.065 4.065 10 C 0.236 3.764 11 H 0.010 0.990 12 C -0.074 4.074 13 H 0.071 0.929 14 C -0.105 4.105 15 C -0.112 4.112 16 C -0.108 4.108 17 C -0.137 4.137 18 C 0.151 3.849 19 O -0.564 6.564 20 C -0.158 4.158 21 C 0.189 3.811 22 N -0.588 5.588 23 C -0.214 4.214 24 H 0.053 0.947 25 C -0.046 4.046 26 N -0.932 5.932 27 Si 0.942 3.058 28 H -0.288 1.288 29 H -0.296 1.296 30 H -0.277 1.277 31 C -0.116 4.116 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.156 0.844 36 H 0.147 0.853 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.379 0.621 49 H 0.057 0.943 50 H 0.072 0.928 51 H -0.007 1.007 52 H 0.049 0.951 53 H 0.243 0.757 54 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -9.493 -11.585 16.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.032 3.968 4 C -0.190 4.190 5 C -0.202 4.202 6 C 0.054 3.946 7 O -0.237 6.237 8 C -0.068 4.068 9 C -0.066 4.066 10 C 0.130 3.870 11 H 0.028 0.972 12 C -0.094 4.094 13 H 0.089 0.911 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.145 4.145 17 C -0.174 4.174 18 C 0.111 3.889 19 O -0.371 6.371 20 C -0.198 4.198 21 C 0.064 3.936 22 N -0.310 5.310 23 C -0.345 4.345 24 H 0.071 0.929 25 C -0.241 4.241 26 N -0.580 5.580 27 Si 0.772 3.228 28 H -0.215 1.215 29 H -0.223 1.223 30 H -0.203 1.203 31 C -0.135 4.135 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.174 0.826 36 H 0.165 0.835 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.226 0.774 49 H 0.076 0.924 50 H 0.091 0.909 51 H 0.011 0.989 52 H 0.068 0.932 53 H 0.052 0.948 54 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.757 -9.424 -11.603 16.404 hybrid contribution -0.140 1.067 1.592 1.921 sum -6.897 -8.356 -10.011 14.752 Atomic orbital electron populations 1.23288 0.76901 1.05344 1.01929 1.86027 1.23070 1.26253 1.89562 1.18827 0.91860 0.84909 1.01159 1.21161 1.00834 0.90848 1.06186 1.21199 0.92409 0.99587 1.06994 1.18994 0.91418 0.85681 0.98494 1.86269 1.36187 1.12769 1.88475 1.23112 0.95827 0.86476 1.01373 1.19108 0.95934 0.90348 1.01227 1.19078 0.87280 0.94029 0.86596 0.97221 1.21525 0.93585 0.97391 0.96899 0.91072 1.21493 0.99985 0.98221 0.94579 1.21505 0.95928 0.96227 1.01333 1.21412 0.95643 1.01878 0.95587 1.22179 1.01089 0.96525 0.97641 1.20987 0.93070 0.86665 0.88223 1.86560 1.26528 1.54452 1.69543 1.22703 1.00340 0.99391 0.97334 1.20360 0.82845 0.92087 0.98348 1.44224 1.01974 1.80824 1.04008 1.19078 0.95944 1.19565 0.99883 0.92946 1.25538 0.99399 0.96776 1.02356 1.70173 1.28370 1.27600 1.31864 0.85629 0.79067 0.76337 0.81731 1.21488 1.22270 1.20270 1.20181 0.91861 0.97096 1.04344 0.92506 0.91601 0.86272 0.82618 0.83512 0.90922 0.93180 0.88484 0.92465 0.93056 0.91843 0.90940 0.90470 0.92040 0.90517 0.91196 0.77353 0.92435 0.90898 0.98856 0.93232 0.94770 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.65 10.50 -93.36 -0.98 -10.63 16 3 C 0.08 2.57 6.68 22.49 0.15 2.72 16 4 C -0.17 -5.19 9.03 22.35 0.20 -4.99 16 5 C -0.18 -6.21 9.03 22.35 0.20 -6.01 16 6 C 0.10 4.19 5.68 22.49 0.13 4.31 16 7 O -0.32 -14.51 9.61 -93.39 -0.90 -15.40 16 8 C 0.03 0.88 9.81 113.37 1.11 2.00 16 9 C -0.07 -2.77 3.09 -19.78 -0.06 -2.83 16 10 C 0.24 10.68 1.97 44.25 0.09 10.77 16 11 H 0.01 0.53 7.60 -2.39 -0.02 0.52 16 12 C -0.07 -2.70 0.97 -10.69 -0.01 -2.71 16 13 H 0.07 2.67 6.38 -2.38 -0.02 2.65 16 14 C -0.10 -3.28 4.61 30.59 0.14 -3.14 16 15 C -0.11 -2.70 5.93 30.59 0.18 -2.52 16 16 C -0.11 -2.39 5.78 30.59 0.18 -2.22 16 17 C -0.14 -3.39 4.90 30.60 0.15 -3.24 16 18 C 0.15 5.00 0.55 -10.73 -0.01 4.99 16 19 O -0.56 -19.28 10.46 -148.98 -1.56 -20.84 16 20 C -0.16 -6.01 5.05 30.61 0.15 -5.86 16 21 C 0.19 9.48 5.05 86.27 0.44 9.91 16 22 N -0.59 -30.52 2.98 -679.83 -2.03 -32.55 16 23 C -0.21 -12.09 8.15 84.03 0.69 -11.40 16 24 H 0.05 3.05 6.50 -2.91 -0.02 3.03 16 25 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 26 N -0.93 -56.92 11.22 21.65 0.24 -56.68 16 27 Si 0.94 47.12 29.58 68.60 2.03 49.15 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 29 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 30 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 31 C -0.12 -4.37 7.57 22.35 0.17 -4.20 16 32 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 33 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.16 3.48 6.29 -2.91 -0.02 3.46 16 36 H 0.15 4.09 6.29 -2.91 -0.02 4.07 16 37 H 0.07 1.87 7.65 -2.39 -0.02 1.85 16 38 H 0.05 1.58 7.67 -2.39 -0.02 1.56 16 39 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 40 H 0.06 1.83 6.12 -2.39 -0.01 1.81 16 41 H 0.05 1.76 7.71 -2.39 -0.02 1.74 16 42 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.45 7.70 -2.39 -0.02 1.43 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.38 9.98 9.04 -74.06 -0.67 9.31 16 49 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 51 H -0.01 -0.37 7.82 -2.39 -0.02 -0.38 16 52 H 0.05 2.80 6.13 -2.39 -0.01 2.79 16 53 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 54 H 0.14 4.91 5.60 -2.91 -0.02 4.89 16 Total: -1.00 -73.95 399.71 2.48 -71.47 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: 0.24 Total: 30.69 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 5.43 Total: -15.20 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.79 Total: -89.23 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -3.44 Total: -46.87 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -73.95 2.48 -71.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033652721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.758 kcal (2) G-P(sol) polarization free energy of solvation -73.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds