Wall clock time and date at job start Tue Mar 31 2020 05:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35949 * 117.00175 * 2 1 4 4 C 1.38006 * 119.98969 * 0.27750 * 3 2 1 5 5 C 1.40175 * 119.81851 * 180.22962 * 4 3 2 6 6 C 1.46530 * 120.09319 * 179.73938 * 5 4 3 7 7 C 1.36594 * 119.99973 * 136.31838 * 6 5 4 8 8 C 1.43192 * 120.00157 * 169.97356 * 7 6 5 9 9 N 8.26117 * 82.54471 * 3.82226 * 2 1 3 10 10 C 1.47411 * 119.99788 * 349.97519 * 7 6 5 11 11 N 1.31279 * 125.14344 * 352.46862 * 10 7 6 12 12 C 1.35484 * 109.63962 * 180.15897 * 11 10 7 13 13 C 1.39898 * 133.35681 * 179.87898 * 12 11 10 14 14 C 1.36589 * 119.88967 * 179.68328 * 13 12 11 15 15 C 1.38780 * 120.67500 * 0.02562 * 14 13 12 16 16 C 1.37929 * 120.46381 * 359.97438 * 15 14 13 17 17 C 1.38769 * 119.72403 * 359.97438 * 16 15 14 18 18 N 1.37043 * 125.14287 * 172.17556 * 10 7 6 19 19 H 0.97005 * 126.40837 * 359.97438 * 18 10 7 20 20 C 1.40227 * 119.81179 * 359.47260 * 5 4 3 21 21 C 1.37576 * 119.98435 * 0.27228 * 20 5 4 22 22 C 1.39118 * 120.17610 * 0.02562 * 21 20 5 23 23 O 1.35581 * 119.90741 * 179.97438 * 22 21 20 24 24 C 1.34752 * 116.99586 * 354.43289 * 23 22 21 25 25 H 1.08001 * 120.00112 * 5.07943 * 24 23 22 26 26 C 1.38703 * 119.99565 * 185.07394 * 24 23 22 27 27 N 1.31512 * 120.00438 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99612 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47003 * 90.00174 * 28 26 24 30 30 H 1.48502 * 109.47148 * 210.00124 * 28 26 24 31 31 H 1.48497 * 109.47105 * 330.00091 * 28 26 24 32 32 H 1.09004 * 109.47221 * 300.00093 * 1 2 3 33 33 H 1.09004 * 109.47311 * 60.00315 * 1 2 3 34 34 H 1.09005 * 109.47155 * 179.97438 * 1 2 3 35 35 H 1.07995 * 120.09326 * 359.97438 * 4 3 2 36 36 H 1.08001 * 120.00240 * 316.31810 * 6 5 4 37 37 H 1.08005 * 120.05557 * 359.71212 * 13 12 11 38 38 H 1.07997 * 119.66555 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.76683 * 180.02562 * 15 14 13 40 40 H 1.08005 * 120.13764 * 179.97438 * 16 15 14 41 41 H 1.08004 * 120.01157 * 180.25193 * 20 5 4 42 42 H 1.08002 * 119.91396 * 180.02562 * 21 20 5 43 43 H 0.96998 * 120.00620 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2944 2.3686 0.0058 5 6 1.9345 3.6156 0.0009 6 6 1.1422 4.8482 0.0012 7 6 1.4954 5.8870 0.8148 8 6 0.8607 7.1618 0.6649 9 7 0.3571 8.1731 0.5460 10 6 2.5302 5.6957 1.8471 11 7 3.0750 4.5449 2.1668 12 6 3.9841 4.7301 3.1542 13 6 4.8317 3.8647 3.8541 14 6 5.6641 4.3590 4.8176 15 6 5.6792 5.7150 5.1127 16 6 4.8525 6.5872 4.4358 17 6 4.0004 6.1045 3.4526 18 7 3.0730 6.6932 2.6143 19 1 2.8488 7.6361 2.5754 20 6 3.3353 3.6802 0.0013 21 6 4.0770 2.5215 0.0009 22 6 3.4411 1.2842 -0.0005 23 8 4.1775 0.1458 -0.0014 24 6 5.5131 0.2813 -0.1174 25 1 5.9577 1.2655 -0.1216 26 6 6.3169 -0.8434 -0.2313 27 7 5.7755 -2.0419 -0.2266 28 14 8.1685 -0.6556 -0.3914 29 1 8.7848 -0.6572 0.9597 30 1 8.7139 -1.7857 -1.1856 31 1 8.4788 0.6253 -1.0755 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 0.2159 2.3137 0.0099 36 1 0.2788 4.9354 -0.6418 37 1 4.8282 2.8077 3.6325 38 1 6.3166 3.6876 5.3560 39 1 6.3436 6.0900 5.8771 40 1 4.8683 7.6414 4.6700 41 1 3.8319 4.6394 0.0017 42 1 5.1558 2.5726 0.0017 43 1 6.3375 -2.8284 -0.3067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033741063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:53 Heat of formation + Delta-G solvation = 104.905389 kcal Electronic energy + Delta-G solvation = -31152.762216 eV Core-core repulsion = 26938.569587 eV Total energy + Delta-G solvation = -4214.192629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99135 -39.60368 -37.82054 -37.58971 -36.71112 -36.31296 -33.58024 -32.96991 -32.35284 -29.97726 -29.75508 -29.12643 -28.36276 -26.63984 -25.58061 -24.07981 -22.54726 -22.26437 -21.56110 -21.28183 -20.23541 -18.46128 -18.10763 -17.55775 -17.33181 -16.45115 -16.28768 -15.29745 -15.28314 -15.12196 -14.93254 -14.58950 -14.28512 -14.20062 -13.88323 -13.84473 -13.78214 -13.64399 -13.48316 -13.37269 -12.89139 -12.51039 -12.34727 -11.94429 -11.85984 -11.79720 -11.68616 -11.46347 -11.32773 -11.16173 -10.99116 -10.67743 -10.64526 -10.58543 -10.45531 -9.74055 -9.51948 -9.37071 -8.88409 -8.27803 -7.86136 -7.78520 -6.71169 -6.57716 -4.06647 0.39633 1.24317 1.60470 2.25858 2.40440 2.46677 2.81194 2.83185 3.08471 3.09380 3.14004 3.50298 3.68026 3.87259 4.02830 4.04990 4.41105 4.57495 4.58770 4.98073 5.00091 5.07273 5.08920 5.19063 5.37594 5.41997 5.51163 5.54621 5.58967 5.61827 5.72615 5.82342 5.86124 5.93061 5.95955 6.15050 6.29429 6.38658 6.45246 6.59147 6.62413 6.65116 6.89161 6.95603 7.03271 7.17043 7.27999 7.34889 7.37590 7.60060 7.84419 8.00017 8.19484 8.86092 9.56851 10.58039 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.007839 B = 0.003942 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.027713 B = 7100.751792 C = 9546.626130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.039 3.961 4 C -0.119 4.119 5 C -0.178 4.178 6 C 0.101 3.899 7 C -0.096 4.096 8 C 0.264 3.736 9 N -0.435 5.435 10 C 0.341 3.659 11 N -0.443 5.443 12 C 0.057 3.943 13 C -0.055 4.055 14 C -0.132 4.132 15 C -0.104 4.104 16 C -0.119 4.119 17 C 0.046 3.954 18 N -0.604 5.604 19 H 0.417 0.583 20 C 0.021 3.979 21 C -0.227 4.227 22 C 0.163 3.837 23 O -0.147 6.147 24 C -0.385 4.385 25 H 0.098 0.902 26 C 0.042 3.958 27 N -0.845 5.845 28 Si 0.942 3.058 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.265 1.265 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.287 12.480 5.213 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.220 6.220 3 C -0.006 4.006 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.076 3.924 7 C -0.102 4.102 8 C -0.050 4.050 9 N -0.111 5.111 10 C 0.077 3.923 11 N -0.162 5.162 12 C -0.063 4.063 13 C -0.074 4.074 14 C -0.153 4.153 15 C -0.124 4.124 16 C -0.140 4.140 17 C -0.064 4.064 18 N -0.215 5.215 19 H 0.255 0.745 20 C 0.001 3.999 21 C -0.247 4.247 22 C 0.106 3.894 23 O -0.048 6.048 24 C -0.460 4.460 25 H 0.115 0.885 26 C -0.165 4.165 27 N -0.477 5.477 28 Si 0.766 3.234 29 H -0.196 1.196 30 H -0.201 1.201 31 H -0.189 1.189 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.119 0.881 42 H 0.149 0.851 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.054 12.481 4.739 14.275 hybrid contribution 0.916 1.281 0.454 1.639 sum -4.139 13.762 5.193 15.281 Atomic orbital electron populations 1.22869 0.80502 1.02838 1.00194 1.86226 1.19275 1.26396 1.90060 1.17884 0.89258 0.84397 1.09031 1.20643 0.98079 0.90600 1.04593 1.17703 0.92655 0.90347 1.17257 1.22538 0.92697 0.89745 0.87458 1.15115 1.03008 0.89355 1.02755 1.25512 0.93349 0.92588 0.93570 1.81266 1.09857 1.10962 1.09026 1.20937 0.95119 0.83082 0.93134 1.71291 1.10491 1.21089 1.13298 1.19185 0.99015 0.90938 0.97149 1.20226 0.93377 0.99781 0.94017 1.20648 1.00229 0.95419 0.98996 1.20848 0.98698 0.93258 0.99558 1.19876 0.97717 0.99604 0.96775 1.18880 0.95925 0.94465 0.97101 1.43180 1.34647 1.10458 1.33204 0.74484 1.20474 0.91731 0.96664 0.91001 1.20629 1.00268 0.90625 1.13168 1.18886 0.88179 0.87390 0.94952 1.83968 1.19668 1.26185 1.74940 1.21522 0.78454 0.95035 1.51033 0.88511 1.25377 1.00730 0.94172 0.96227 1.70041 1.36567 0.97810 1.43282 0.85697 0.80174 0.78670 0.78904 1.19612 1.20124 1.18931 0.93611 0.93626 0.89250 0.86247 0.84694 0.84786 0.85474 0.85665 0.86493 0.88090 0.85093 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.31 -6.31 10.28 -34.20 -0.35 -6.67 16 3 C 0.04 0.80 6.70 -39.13 -0.26 0.54 16 4 C -0.12 -1.97 8.78 -38.94 -0.34 -2.31 16 5 C -0.18 -2.76 4.69 -105.08 -0.49 -3.25 16 6 C 0.10 1.21 9.47 -36.84 -0.35 0.86 16 7 C -0.10 -1.17 5.72 -104.84 -0.60 -1.77 16 8 C 0.26 3.18 15.00 -22.48 -0.34 2.84 16 9 N -0.43 -5.85 18.54 41.84 0.78 -5.08 16 10 C 0.34 4.76 6.63 -154.45 -1.02 3.74 16 11 N -0.44 -7.26 6.62 -8.77 -0.06 -7.32 16 12 C 0.06 0.89 7.22 -84.72 -0.61 0.28 16 13 C -0.05 -0.81 10.05 -39.56 -0.40 -1.21 16 14 C -0.13 -1.60 9.96 -39.98 -0.40 -1.99 16 15 C -0.10 -1.11 10.03 -39.49 -0.40 -1.51 16 16 C -0.12 -1.34 10.07 -39.50 -0.40 -1.74 16 17 C 0.05 0.62 7.30 -83.90 -0.61 0.01 16 18 N -0.60 -7.42 6.13 -8.48 -0.05 -7.48 16 19 H 0.42 4.09 8.72 -40.82 -0.36 3.73 16 20 C 0.02 0.36 6.39 -39.08 -0.25 0.11 16 21 C -0.23 -4.63 9.14 -39.50 -0.36 -4.99 16 22 C 0.16 3.77 6.67 -38.72 -0.26 3.51 16 23 O -0.15 -4.05 9.52 -13.83 -0.13 -4.18 16 24 C -0.38 -10.17 9.48 30.90 0.29 -9.88 16 25 H 0.10 2.35 5.18 -52.49 -0.27 2.07 16 26 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 27 N -0.84 -23.74 13.67 55.48 0.76 -22.98 16 28 Si 0.94 19.46 29.55 -169.99 -5.02 14.43 16 29 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 30 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 31 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 32 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 33 H 0.05 0.55 7.67 -51.93 -0.40 0.15 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.12 1.59 6.28 -52.49 -0.33 1.26 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 38 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.10 1.65 6.92 -52.48 -0.36 1.28 16 42 H 0.13 2.70 5.61 -52.49 -0.29 2.41 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 379.00 15.07 5.71 5.71 Total: -1.00 -31.79 379.00 -8.35 -40.14 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.08 Total: 7.73 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -5.90 Total: -14.32 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 1.42 Total: -42.85 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.48 Total: -10.84 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.79 -8.35 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033741063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.050 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds