Wall clock time and date at job start Tue Mar 31 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35774 * 116.99840 * 2 1 4 4 C 1.38899 * 119.89607 * 0.02562 * 3 2 1 5 5 C 1.37697 * 120.20319 * 179.97438 * 4 3 2 6 6 C 1.40189 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.46612 * 120.10038 * 179.97438 * 6 5 4 8 8 C 1.36514 * 119.99699 * 44.22288 * 7 6 5 9 9 C 1.43203 * 119.99882 * 190.32679 * 8 7 6 10 10 N 8.90846 * 109.48799 * 3.75393 * 2 1 3 11 11 C 1.47436 * 120.00138 * 10.31963 * 8 7 6 12 12 N 1.31265 * 125.13665 * 8.74015 * 11 8 7 13 13 C 1.35503 * 109.63321 * 180.13340 * 12 11 8 14 14 C 1.39887 * 133.35792 * 179.97438 * 13 12 11 15 15 C 1.36598 * 119.89113 * 179.68768 * 14 13 12 16 16 C 1.38777 * 120.67361 * 0.02562 * 15 14 13 17 17 C 1.37926 * 120.46187 * 359.97438 * 16 15 14 18 18 C 1.38773 * 119.72234 * 359.97438 * 17 16 15 19 19 N 1.37028 * 125.13919 * 188.48162 * 11 8 7 20 20 H 0.97007 * 126.40440 * 359.97438 * 19 11 8 21 21 C 1.40065 * 119.79979 * 0.25678 * 6 5 4 22 22 C 1.38245 * 119.79075 * 359.51028 * 21 6 5 23 23 O 1.35802 * 119.99657 * 180.23208 * 22 21 6 24 24 C 1.34817 * 117.00040 * 353.75411 * 23 22 21 25 25 H 1.07999 * 120.00106 * 5.16193 * 24 23 22 26 26 C 1.38642 * 119.99730 * 185.15356 * 24 23 22 27 27 N 1.31567 * 120.00530 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 119.99578 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47293 * 90.00558 * 28 26 24 30 30 H 1.48501 * 109.47053 * 210.00402 * 28 26 24 31 31 H 1.48500 * 109.46992 * 330.00204 * 28 26 24 32 32 H 1.09005 * 109.46740 * 299.99054 * 1 2 3 33 33 H 1.08991 * 109.47608 * 59.99597 * 1 2 3 34 34 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 35 35 H 1.07993 * 119.89951 * 0.02562 * 4 3 2 36 36 H 1.07999 * 119.99775 * 180.02562 * 5 4 3 37 37 H 1.07995 * 120.00047 * 224.21435 * 7 6 5 38 38 H 1.08003 * 120.05285 * 359.71120 * 14 13 12 39 39 H 1.07992 * 119.66447 * 180.02562 * 15 14 13 40 40 H 1.07999 * 119.76494 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.13838 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.10250 * 179.74920 * 21 6 5 43 43 H 0.96994 * 120.00100 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 1.2867 2.3733 0.0005 5 6 1.9052 3.6035 0.0011 6 6 3.3047 3.6844 0.0016 7 6 3.9657 4.9931 0.0016 8 6 3.5167 5.9844 0.8258 9 6 4.0096 7.3203 0.6735 10 7 4.4009 8.3801 0.5498 11 6 2.5243 5.6797 1.8727 12 7 2.1269 4.4748 2.2093 13 6 1.2083 4.5590 3.2019 14 6 0.4760 3.6049 3.9162 15 6 -0.3945 4.0043 4.8902 16 6 -0.5625 5.3508 5.1810 17 6 0.1488 6.3094 4.4898 18 6 1.0387 5.9235 3.4974 19 7 1.8810 6.6113 2.6448 20 1 1.9958 7.5736 2.6010 21 6 4.0698 2.5111 -0.0038 22 6 3.4400 1.2805 0.0005 23 8 4.1776 0.1402 0.0001 24 6 5.5122 0.2747 -0.1355 25 1 5.9567 1.2588 -0.1535 26 6 6.3140 -0.8503 -0.2515 27 7 5.7725 -2.0492 -0.2300 28 14 8.1633 -0.6640 -0.4386 29 1 8.7982 -0.6551 0.9038 30 1 8.6976 -1.8003 -1.2314 31 1 8.4641 0.6116 -1.1370 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5138 -0.8898 34 1 -0.3633 -1.0277 -0.0005 35 1 0.2084 2.3129 0.0014 36 1 1.3121 4.5061 0.0019 37 1 4.8077 5.1728 -0.6503 38 1 0.5989 2.5543 3.6981 39 1 -0.9577 3.2646 5.4397 40 1 -1.2549 5.6501 5.9538 41 1 0.0136 7.3559 4.7201 42 1 5.1483 2.5677 -0.0075 43 1 6.3335 -2.8363 -0.3116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033922099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:57 Heat of formation + Delta-G solvation = 105.185986 kcal Electronic energy + Delta-G solvation = -31049.481837 eV Core-core repulsion = 26835.301376 eV Total energy + Delta-G solvation = -4214.180462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12053 -39.60632 -37.96547 -37.46746 -36.82409 -36.32563 -33.67201 -33.09557 -32.16717 -30.14486 -29.80642 -29.03268 -28.53371 -26.72075 -25.33222 -24.26886 -22.68659 -22.39864 -21.58211 -21.36676 -20.18383 -18.60081 -17.96351 -17.70971 -17.38876 -16.59479 -16.13420 -15.60896 -15.34337 -15.15428 -14.90635 -14.59188 -14.36326 -14.12623 -14.00206 -13.94475 -13.83485 -13.65915 -13.39260 -13.31995 -13.02167 -12.61399 -12.28919 -12.09589 -11.96126 -11.77558 -11.63866 -11.52946 -11.37531 -11.22347 -10.95453 -10.80427 -10.71543 -10.52563 -10.33318 -9.82688 -9.47202 -9.44310 -8.74753 -8.41829 -8.04584 -7.73398 -6.74761 -6.35318 -3.92934 0.29902 1.12323 1.46647 2.17230 2.32409 2.41518 2.70641 2.71222 3.17479 3.17914 3.22415 3.37657 3.53958 3.88781 3.99053 4.01641 4.30057 4.45777 4.54024 4.87662 4.95208 5.04635 5.12717 5.19723 5.24651 5.29416 5.39157 5.43141 5.56066 5.57371 5.67519 5.70623 5.78565 5.83228 5.94691 6.00480 6.17449 6.31673 6.34833 6.45866 6.49582 6.62908 6.80880 6.90983 6.99115 7.16113 7.17681 7.26423 7.27923 7.55923 7.86718 8.02272 8.15538 9.09019 9.81003 10.82346 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.009063 B = 0.003394 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.631910 B = 8248.391045 C = 9908.606764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.300 6.300 3 C 0.092 3.908 4 C -0.181 4.181 5 C -0.064 4.064 6 C -0.092 4.092 7 C 0.094 3.906 8 C -0.071 4.071 9 C 0.260 3.740 10 N -0.422 5.422 11 C 0.336 3.664 12 N -0.436 5.436 13 C 0.055 3.945 14 C -0.056 4.056 15 C -0.133 4.133 16 C -0.104 4.104 17 C -0.116 4.116 18 C 0.048 3.952 19 N -0.601 5.601 20 H 0.418 0.582 21 C -0.162 4.162 22 C 0.120 3.880 23 O -0.169 6.169 24 C -0.390 4.390 25 H 0.090 0.910 26 C 0.040 3.960 27 N -0.859 5.859 28 Si 0.937 3.063 29 H -0.274 1.274 30 H -0.279 1.279 31 H -0.268 1.268 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 13.873 5.515 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.213 6.213 3 C 0.046 3.954 4 C -0.200 4.200 5 C -0.084 4.084 6 C -0.093 4.093 7 C 0.068 3.932 8 C -0.077 4.077 9 C -0.054 4.054 10 N -0.098 5.098 11 C 0.072 3.928 12 N -0.154 5.154 13 C -0.065 4.065 14 C -0.075 4.075 15 C -0.153 4.153 16 C -0.123 4.123 17 C -0.137 4.137 18 C -0.062 4.062 19 N -0.213 5.213 20 H 0.257 0.743 21 C -0.182 4.182 22 C 0.067 3.933 23 O -0.073 6.073 24 C -0.467 4.467 25 H 0.107 0.893 26 C -0.164 4.164 27 N -0.494 5.494 28 Si 0.762 3.238 29 H -0.200 1.200 30 H -0.204 1.204 31 H -0.192 1.192 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.096 14.023 5.043 18.580 hybrid contribution 0.370 1.258 0.449 1.386 sum -10.726 15.281 5.492 19.461 Atomic orbital electron populations 1.22916 0.80224 1.02965 1.00402 1.86213 1.19560 1.26732 1.88796 1.18487 0.89545 0.84358 1.03016 1.20484 0.98420 0.91508 1.09563 1.20170 0.92191 0.95851 1.00225 1.18128 0.93054 0.90443 1.07638 1.22824 0.91725 0.90437 0.88191 1.15181 1.03922 0.87108 1.01489 1.25463 0.93665 0.92474 0.93836 1.81301 1.08889 1.11149 1.08495 1.20907 0.94709 0.83882 0.93266 1.71376 1.12650 1.18692 1.12720 1.19192 0.98901 0.91210 0.97205 1.20154 0.94319 0.98923 0.94151 1.20637 0.99893 0.95968 0.98821 1.20857 0.99387 0.92638 0.99456 1.19906 0.97728 0.99710 0.96385 1.18890 0.97317 0.93243 0.96729 1.43187 1.36288 1.09635 1.32145 0.74331 1.20936 1.00016 0.89892 1.07406 1.18359 0.88223 0.87703 0.99038 1.84097 1.19311 1.24664 1.79254 1.21257 0.78945 0.94479 1.51982 0.89302 1.25226 1.00073 0.94319 0.96813 1.70061 1.35909 0.97510 1.45964 0.85787 0.81120 0.78335 0.78605 1.19998 1.20384 1.19232 0.93400 0.93488 0.89087 0.86444 0.88007 0.83681 0.85086 0.85491 0.85567 0.86349 0.84571 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.30 -6.23 10.27 -33.66 -0.35 -6.58 16 3 C 0.09 1.90 6.72 -38.81 -0.26 1.64 16 4 C -0.18 -3.05 9.01 -39.53 -0.36 -3.40 16 5 C -0.06 -1.02 6.48 -39.05 -0.25 -1.27 16 6 C -0.09 -1.48 4.63 -105.10 -0.49 -1.97 16 7 C 0.09 1.17 9.47 -36.83 -0.35 0.82 16 8 C -0.07 -0.86 5.72 -104.85 -0.60 -1.46 16 9 C 0.26 3.08 15.00 -22.46 -0.34 2.75 16 10 N -0.42 -5.60 18.54 41.86 0.78 -4.83 16 11 C 0.34 4.48 6.62 -154.46 -1.02 3.45 16 12 N -0.44 -6.75 6.80 -8.77 -0.06 -6.81 16 13 C 0.05 0.78 7.22 -84.72 -0.61 0.17 16 14 C -0.06 -0.71 10.05 -39.56 -0.40 -1.11 16 15 C -0.13 -1.33 9.96 -39.97 -0.40 -1.73 16 16 C -0.10 -0.94 10.03 -39.50 -0.40 -1.34 16 17 C -0.12 -1.15 10.07 -39.50 -0.40 -1.55 16 18 C 0.05 0.59 7.30 -83.89 -0.61 -0.02 16 19 N -0.60 -6.83 6.13 -8.48 -0.05 -6.88 16 20 H 0.42 3.71 8.73 -40.82 -0.36 3.36 16 21 C -0.16 -3.21 8.91 -38.89 -0.35 -3.55 16 22 C 0.12 2.78 6.65 -39.05 -0.26 2.52 16 23 O -0.17 -4.75 9.53 -14.70 -0.14 -4.89 16 24 C -0.39 -10.62 9.48 30.88 0.29 -10.33 16 25 H 0.09 2.18 5.21 -52.49 -0.27 1.91 16 26 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 27 N -0.86 -25.18 13.67 55.48 0.76 -24.42 16 28 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 29 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 30 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 31 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 32 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 33 H 0.05 0.58 7.65 -51.93 -0.40 0.19 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.12 1.69 6.27 -52.49 -0.33 1.36 16 36 H 0.10 1.47 7.03 -52.49 -0.37 1.10 16 37 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.14 2.64 5.63 -52.49 -0.30 2.35 16 43 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -33.48 379.33 -8.35 -41.84 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.09 Total: 5.59 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -5.90 Total: -13.97 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 1.42 Total: -42.94 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.49 Total: -11.47 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.48 -8.35 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033922099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.024 kcal (2) G-P(sol) polarization free energy of solvation -33.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds