Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30494 * 125.65195 * 2 1 4 4 C 1.34132 * 109.25905 * 179.72920 * 3 2 1 5 5 C 1.34676 * 108.01417 * 0.39944 * 4 3 2 6 6 N 1.35043 * 125.64777 * 179.97438 * 2 1 3 7 7 C 1.46503 * 126.39820 * 0.02562 * 6 2 1 8 8 C 1.50700 * 109.46951 * 274.79253 * 7 6 2 9 9 C 1.38364 * 119.85314 * 274.84459 * 8 7 6 10 10 C 1.37946 * 120.14923 * 179.72758 * 9 8 7 11 11 C 1.39599 * 119.84772 * 0.54816 * 10 9 8 12 12 C 1.47802 * 120.14687 * 179.75199 * 11 10 9 13 13 O 1.21564 * 119.99700 * 179.97438 * 12 11 10 14 14 N 1.34770 * 120.00040 * 359.97438 * 12 11 10 15 15 C 1.39121 * 120.00477 * 176.00423 * 14 12 11 16 16 C 1.39515 * 119.83877 * 215.17863 * 15 14 12 17 17 C 1.36358 * 120.16160 * 179.75761 * 16 15 14 18 18 C 1.40875 * 119.83466 * 0.53304 * 17 16 15 19 19 C 1.41137 * 120.16003 * 179.69766 * 18 17 16 20 20 H 1.08004 * 120.00087 * 213.95661 * 19 18 17 21 21 C 1.39909 * 120.00476 * 33.96465 * 19 18 17 22 22 N 1.30872 * 119.99462 * 5.76805 * 21 19 18 23 23 Si 1.86798 * 120.00443 * 185.77544 * 21 19 18 24 24 H 1.48500 * 109.47323 * 89.99575 * 23 21 19 25 25 H 1.48496 * 109.47025 * 209.99874 * 23 21 19 26 26 H 1.48503 * 109.46873 * 329.99434 * 23 21 19 27 27 C 1.40877 * 119.67668 * 359.71790 * 18 17 16 28 28 C 1.36352 * 119.83119 * 0.02562 * 27 18 17 29 29 C 1.39601 * 119.70946 * 359.72588 * 11 10 9 30 30 C 1.37953 * 119.84907 * 0.02562 * 29 11 10 31 31 H 1.09001 * 109.47438 * 274.96980 * 1 2 3 32 32 H 1.09006 * 109.47150 * 34.96974 * 1 2 3 33 33 H 1.08996 * 109.47246 * 154.96922 * 1 2 3 34 34 H 1.07998 * 125.99412 * 180.24333 * 4 3 2 35 35 H 1.08005 * 126.58578 * 179.86936 * 5 4 3 36 36 H 1.09002 * 109.46811 * 34.79360 * 7 6 2 37 37 H 1.09006 * 109.47142 * 154.79159 * 7 6 2 38 38 H 1.08008 * 119.92184 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.07576 * 180.25504 * 10 9 8 40 40 H 0.97004 * 119.99627 * 356.00115 * 14 12 11 41 41 H 1.07995 * 119.91165 * 359.97438 * 16 15 14 42 42 H 1.08007 * 120.07884 * 180.22905 * 17 16 15 43 43 H 0.97008 * 120.00010 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.08420 * 179.97438 * 27 18 17 45 45 H 1.08006 * 119.91777 * 179.97438 * 28 27 18 46 46 H 1.08001 * 120.07639 * 179.97438 * 29 11 10 47 47 H 1.08001 * 119.92415 * 179.97438 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0060 5 6 3.5925 -0.6644 0.0009 6 7 2.2940 -1.0974 0.0005 7 6 1.8424 -2.4911 0.0006 8 6 1.5741 -2.9320 1.4164 9 6 2.6118 -3.4091 2.1976 10 6 2.3742 -3.8091 3.4962 11 6 1.0811 -3.7425 4.0181 12 6 0.8181 -4.1746 5.4069 13 8 -0.3089 -4.1150 5.8588 14 7 1.8276 -4.6345 6.1722 15 6 1.5969 -4.9628 7.5043 16 6 2.5874 -4.7284 8.4585 17 6 2.3665 -5.0430 9.7668 18 6 1.1387 -5.6164 10.1521 19 6 0.9052 -5.9507 11.5032 20 1 0.3048 -6.8138 11.7501 21 6 1.4514 -5.1638 12.5231 22 7 2.0829 -4.0562 12.2279 23 14 1.2794 -5.6942 14.3059 24 1 2.4362 -6.5456 14.6829 25 1 1.2436 -4.4931 15.1784 26 1 0.0215 -6.4655 14.4737 27 6 0.1454 -5.8550 9.1820 28 6 0.3786 -5.5303 7.8784 29 6 0.0377 -3.2656 3.2228 30 6 0.2901 -2.8639 1.9273 31 1 -0.3634 0.0890 1.0238 32 1 -0.3634 0.8422 -0.5890 33 1 -0.3633 -0.9311 -0.4348 34 1 4.4099 1.3410 0.0112 35 1 4.4776 -1.2833 0.0016 36 1 0.9278 -2.5766 -0.5862 37 1 2.6151 -3.1234 -0.4367 38 1 3.6110 -3.4639 1.7911 39 1 3.1857 -4.1774 4.1061 40 1 2.7150 -4.7368 5.7941 41 1 3.5299 -4.2935 8.1607 42 1 3.1328 -4.8576 10.5050 43 1 2.4619 -3.5107 12.9349 44 1 -0.7981 -6.2947 9.4700 45 1 -0.3819 -5.7130 7.1334 46 1 -0.9650 -3.2119 3.6204 47 1 -0.5163 -2.4951 1.3108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038849886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = 75.791708 kcal Electronic energy + Delta-G solvation = -29763.694120 eV Core-core repulsion = 25684.072121 eV Total energy + Delta-G solvation = -4079.621999 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.40320 -40.34838 -38.91709 -37.23350 -34.91648 -34.57654 -33.06451 -32.11306 -31.45828 -31.24347 -29.63723 -28.97789 -27.51848 -26.78289 -25.01783 -23.15899 -22.97425 -21.59648 -21.52353 -20.86067 -20.06803 -19.75443 -18.09706 -17.43161 -17.30923 -16.55421 -16.50453 -15.51147 -15.24693 -15.16332 -14.99539 -14.74278 -14.55114 -14.19153 -13.97235 -13.89990 -13.63222 -13.37488 -13.18235 -13.04835 -12.77558 -12.69269 -12.68783 -12.61011 -12.20240 -12.06168 -11.79252 -11.46355 -11.34635 -11.16840 -11.06440 -10.78596 -10.23961 -10.08668 -9.93929 -9.55103 -9.50899 -9.33035 -9.25644 -9.16423 -8.95793 -8.60745 -7.60734 -6.94632 -6.70313 -4.36831 0.46650 1.04266 1.75450 2.35860 2.61469 2.91185 2.98391 3.03586 3.07604 3.11062 3.20548 3.54218 3.79884 3.94509 4.04100 4.11611 4.19872 4.49472 4.50989 4.56309 4.64659 4.73521 4.87957 4.96137 5.01228 5.13722 5.19106 5.24601 5.42003 5.45656 5.57459 5.61075 5.63174 5.92525 5.93155 6.07922 6.10782 6.14252 6.38539 6.49469 6.50592 6.67564 6.86381 6.87790 7.01336 7.13971 7.23502 7.55866 7.64937 7.79724 7.85638 8.00267 8.17152 8.24692 8.54592 8.64691 8.86605 8.93819 10.24188 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.001659 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.468994 B =16870.232171 C =17269.892865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.209 3.791 3 N -0.494 5.494 4 C -0.027 4.027 5 C -0.058 4.058 6 N -0.451 5.451 7 C 0.145 3.855 8 C -0.104 4.104 9 C -0.104 4.104 10 C -0.090 4.090 11 C -0.107 4.107 12 C 0.536 3.464 13 O -0.525 6.525 14 N -0.641 5.641 15 C -0.004 4.004 16 C -0.116 4.116 17 C -0.140 4.140 18 C 0.107 3.893 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.071 3.929 22 N -0.806 5.806 23 Si 0.914 3.086 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.208 4.208 28 C -0.080 4.080 29 C -0.063 4.063 30 C -0.107 4.107 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.394 0.606 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.279 0.721 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.141 0.859 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.204 2.618 -24.634 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 N -0.213 5.213 4 C -0.175 4.175 5 C -0.190 4.190 6 N -0.134 5.134 7 C 0.023 3.977 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.109 4.109 11 C -0.111 4.111 12 C 0.324 3.676 13 O -0.402 6.402 14 N -0.283 5.283 15 C -0.096 4.096 16 C -0.136 4.136 17 C -0.160 4.160 18 C 0.104 3.896 19 C -0.492 4.492 20 H 0.096 0.904 21 C -0.145 4.145 22 N -0.433 5.433 23 Si 0.739 3.261 24 H -0.194 1.194 25 H -0.203 1.203 26 H -0.187 1.187 27 C -0.228 4.228 28 C -0.100 4.100 29 C -0.082 4.082 30 C -0.126 4.126 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.186 0.814 35 H 0.190 0.810 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.229 0.771 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.125 0.875 46 H 0.159 0.841 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.208 3.542 -24.206 24.563 hybrid contribution 0.988 -0.933 0.757 1.556 sum 3.196 2.610 -23.450 23.810 Atomic orbital electron populations 1.20245 0.85145 1.03542 1.03994 1.23298 0.95708 0.81338 1.04920 1.70252 1.02347 1.28285 1.20439 1.22282 0.94778 0.92818 1.07641 1.22678 0.86971 0.96910 1.12475 1.45455 1.06558 1.06791 1.54638 1.20747 1.02662 0.79864 0.94394 1.20024 0.94323 1.00579 0.95579 1.20893 0.98600 0.98861 0.93876 1.21349 0.95990 0.98097 0.95434 1.20247 0.94359 1.01803 0.94672 1.18228 0.85553 0.78657 0.85204 1.90771 1.21831 1.54355 1.73287 1.42872 1.11767 1.62980 1.10716 1.17203 0.98626 1.12140 0.81622 1.20261 0.97294 1.02548 0.93520 1.20928 0.97976 1.03847 0.93285 1.17711 0.89885 0.89085 0.92908 1.19522 1.28268 1.10962 0.90438 0.90438 1.25893 0.93039 0.93956 1.01633 1.69790 1.27852 1.10400 1.35241 0.86220 0.79732 0.78934 0.81251 1.19424 1.20319 1.18687 1.20781 0.98851 1.10085 0.93055 1.20399 0.95497 0.97723 0.96383 1.21316 0.99646 0.94509 0.92691 1.21017 0.96058 0.99849 0.95627 0.89819 0.89260 0.90993 0.81417 0.80996 0.87991 0.87845 0.85537 0.85204 0.77109 0.89064 0.86026 0.90981 0.88483 0.87468 0.84135 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.09 36.00 0.36 -0.11 16 2 C 0.21 2.07 7.90 -155.42 -1.23 0.85 16 3 N -0.49 -6.09 11.25 -10.82 -0.12 -6.21 16 4 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 5 C -0.06 -0.48 11.58 -16.56 -0.19 -0.67 16 6 N -0.45 -3.66 2.73 -115.18 -0.31 -3.98 16 7 C 0.15 0.79 5.99 -5.19 -0.03 0.75 16 8 C -0.10 -0.79 5.47 -104.53 -0.57 -1.36 16 9 C -0.10 -0.85 9.70 -39.64 -0.38 -1.23 16 10 C -0.09 -0.92 9.54 -39.18 -0.37 -1.29 16 11 C -0.11 -1.41 5.87 -104.97 -0.62 -2.03 16 12 C 0.54 9.45 7.60 -12.35 -0.09 9.36 16 13 O -0.52 -11.28 13.78 5.31 0.07 -11.21 16 14 N -0.64 -11.20 5.25 -10.61 -0.06 -11.25 16 15 C 0.00 -0.08 6.30 -83.60 -0.53 -0.61 16 16 C -0.12 -2.62 9.90 -39.78 -0.39 -3.01 16 17 C -0.14 -3.57 8.57 -39.26 -0.34 -3.91 16 18 C 0.11 2.84 5.51 -106.80 -0.59 2.25 16 19 C -0.46 -12.21 9.03 -37.86 -0.34 -12.55 16 20 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 21 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 22 N -0.81 -20.95 10.94 55.55 0.61 -20.35 16 23 Si 0.91 18.80 29.56 -169.99 -5.03 13.77 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.21 -5.23 9.74 -39.26 -0.38 -5.61 16 28 C -0.08 -1.91 8.61 -39.78 -0.34 -2.25 16 29 C -0.06 -0.73 9.60 -39.18 -0.38 -1.10 16 30 C -0.11 -0.91 9.66 -39.64 -0.38 -1.29 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.30 6.84 -51.93 -0.36 -0.06 16 34 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.10 0.36 7.05 -51.93 -0.37 0.00 16 37 H 0.10 0.36 8.11 -51.93 -0.42 -0.06 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.13 1.10 6.41 -52.49 -0.34 0.76 16 40 H 0.39 5.34 6.86 -40.82 -0.28 5.06 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.12 3.17 6.44 -52.48 -0.34 2.83 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 45 H 0.11 2.51 6.24 -52.48 -0.33 2.18 16 46 H 0.14 1.69 7.65 -52.49 -0.40 1.29 16 47 H 0.13 0.75 7.71 -52.49 -0.40 0.35 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -33.97 398.70 -11.67 -45.63 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -5.74 Total: 10.20 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -7.10 Total: -22.61 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.12 Total: -41.79 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.21 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.97 -11.67 -45.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038849886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.426 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds