Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30494 * 125.65195 * 2 1 4 4 C 1.34132 * 109.25905 * 179.72920 * 3 2 1 5 5 C 1.34676 * 108.01417 * 0.39944 * 4 3 2 6 6 N 1.35043 * 125.64777 * 179.97438 * 2 1 3 7 7 C 1.46503 * 126.39820 * 0.02562 * 6 2 1 8 8 C 1.50700 * 109.46951 * 274.79253 * 7 6 2 9 9 C 1.38364 * 119.85314 * 274.84459 * 8 7 6 10 10 C 1.37946 * 120.14923 * 179.72758 * 9 8 7 11 11 C 1.39599 * 119.84772 * 0.54816 * 10 9 8 12 12 C 1.47802 * 120.14687 * 179.75199 * 11 10 9 13 13 O 1.21564 * 119.99700 * 179.97438 * 12 11 10 14 14 N 1.34770 * 120.00040 * 359.97438 * 12 11 10 15 15 C 1.39121 * 120.00477 * 176.00423 * 14 12 11 16 16 C 1.39515 * 119.83877 * 215.17863 * 15 14 12 17 17 C 1.36358 * 120.16160 * 179.75761 * 16 15 14 18 18 C 1.40875 * 119.83466 * 0.53304 * 17 16 15 19 19 C 1.41137 * 120.16003 * 179.69766 * 18 17 16 20 20 H 1.08004 * 120.00087 * 213.95661 * 19 18 17 21 21 C 1.39909 * 120.00476 * 33.96465 * 19 18 17 22 22 N 1.30872 * 119.99462 * 5.76805 * 21 19 18 23 23 Si 1.86798 * 120.00443 * 185.77544 * 21 19 18 24 24 H 1.48500 * 109.47323 * 89.99575 * 23 21 19 25 25 H 1.48496 * 109.47025 * 209.99874 * 23 21 19 26 26 H 1.48503 * 109.46873 * 329.99434 * 23 21 19 27 27 C 1.40877 * 119.67668 * 359.71790 * 18 17 16 28 28 C 1.36352 * 119.83119 * 0.02562 * 27 18 17 29 29 C 1.39601 * 119.70946 * 359.72588 * 11 10 9 30 30 C 1.37953 * 119.84907 * 0.02562 * 29 11 10 31 31 H 1.09001 * 109.47438 * 274.96980 * 1 2 3 32 32 H 1.09006 * 109.47150 * 34.96974 * 1 2 3 33 33 H 1.08996 * 109.47246 * 154.96922 * 1 2 3 34 34 H 1.07998 * 125.99412 * 180.24333 * 4 3 2 35 35 H 1.08005 * 126.58578 * 179.86936 * 5 4 3 36 36 H 1.09002 * 109.46811 * 34.79360 * 7 6 2 37 37 H 1.09006 * 109.47142 * 154.79159 * 7 6 2 38 38 H 1.08008 * 119.92184 * 0.02562 * 9 8 7 39 39 H 1.07996 * 120.07576 * 180.25504 * 10 9 8 40 40 H 0.97004 * 119.99627 * 356.00115 * 14 12 11 41 41 H 1.07995 * 119.91165 * 359.97438 * 16 15 14 42 42 H 1.08007 * 120.07884 * 180.22905 * 17 16 15 43 43 H 0.97008 * 120.00010 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.08420 * 179.97438 * 27 18 17 45 45 H 1.08006 * 119.91777 * 179.97438 * 28 27 18 46 46 H 1.08001 * 120.07639 * 179.97438 * 29 11 10 47 47 H 1.08001 * 119.92415 * 179.97438 * 30 29 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0060 5 6 3.5925 -0.6644 0.0009 6 7 2.2940 -1.0974 0.0005 7 6 1.8424 -2.4911 0.0006 8 6 1.5741 -2.9320 1.4164 9 6 2.6118 -3.4091 2.1976 10 6 2.3742 -3.8091 3.4962 11 6 1.0811 -3.7425 4.0181 12 6 0.8181 -4.1746 5.4069 13 8 -0.3089 -4.1150 5.8588 14 7 1.8276 -4.6345 6.1722 15 6 1.5969 -4.9628 7.5043 16 6 2.5874 -4.7284 8.4585 17 6 2.3665 -5.0430 9.7668 18 6 1.1387 -5.6164 10.1521 19 6 0.9052 -5.9507 11.5032 20 1 0.3048 -6.8138 11.7501 21 6 1.4514 -5.1638 12.5231 22 7 2.0829 -4.0562 12.2279 23 14 1.2794 -5.6942 14.3059 24 1 2.4362 -6.5456 14.6829 25 1 1.2436 -4.4931 15.1784 26 1 0.0215 -6.4655 14.4737 27 6 0.1454 -5.8550 9.1820 28 6 0.3786 -5.5303 7.8784 29 6 0.0377 -3.2656 3.2228 30 6 0.2901 -2.8639 1.9273 31 1 -0.3634 0.0890 1.0238 32 1 -0.3634 0.8422 -0.5890 33 1 -0.3633 -0.9311 -0.4348 34 1 4.4099 1.3410 0.0112 35 1 4.4776 -1.2833 0.0016 36 1 0.9278 -2.5766 -0.5862 37 1 2.6151 -3.1234 -0.4367 38 1 3.6110 -3.4639 1.7911 39 1 3.1857 -4.1774 4.1061 40 1 2.7150 -4.7368 5.7941 41 1 3.5299 -4.2935 8.1607 42 1 3.1328 -4.8576 10.5050 43 1 2.4619 -3.5107 12.9349 44 1 -0.7981 -6.2947 9.4700 45 1 -0.3819 -5.7130 7.1334 46 1 -0.9650 -3.2119 3.6204 47 1 -0.5163 -2.4951 1.3108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038849886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = 57.845996 kcal Electronic energy + Delta-G solvation = -29764.472304 eV Core-core repulsion = 25684.072121 eV Total energy + Delta-G solvation = -4080.400183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 361.153 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.01556 -41.59462 -40.03326 -38.91304 -36.26965 -35.61979 -34.78560 -32.69808 -32.34060 -31.99090 -31.51278 -30.69913 -28.27198 -27.52662 -26.59487 -24.23311 -23.82347 -23.21341 -22.47275 -22.18570 -21.25644 -20.58130 -19.40511 -19.13858 -18.09477 -17.94239 -17.22045 -17.07546 -16.39883 -16.25759 -16.01680 -15.79039 -15.69175 -15.21544 -14.94481 -14.84823 -14.76213 -14.55061 -14.33622 -14.04318 -13.94758 -13.70132 -13.57831 -13.47788 -13.30906 -13.21044 -13.09697 -12.87809 -12.84255 -12.77944 -12.50444 -12.05543 -11.80558 -11.43959 -11.25302 -10.95014 -10.92240 -10.69968 -10.58419 -10.04339 -9.99627 -9.52351 -9.23160 -8.80754 -8.57283 -6.34698 -0.38338 0.32916 0.79393 1.08988 1.14526 1.38786 1.45019 1.52340 1.70150 2.09089 2.19961 2.22611 2.23840 2.73755 2.85353 3.47917 3.60907 3.64054 3.67044 3.77196 3.90557 3.97512 4.02351 4.26793 4.34097 4.41949 4.45339 4.46921 4.55136 4.62604 4.69843 4.74502 4.87013 4.91655 4.94473 5.06913 5.08913 5.09801 5.18416 5.25557 5.26874 5.33104 5.37425 5.47684 5.63867 5.78955 5.84345 5.89337 5.96638 6.07068 6.31372 6.33982 6.59572 6.63862 6.91946 6.94577 7.21679 7.25890 8.38868 Molecular weight = 361.15amu Principal moments of inertia in cm(-1) A = 0.020790 B = 0.001659 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.468994 B =16870.232171 C =17269.892865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.194 3.806 3 N -0.543 5.543 4 C -0.064 4.064 5 C -0.046 4.046 6 N -0.449 5.449 7 C 0.143 3.857 8 C -0.090 4.090 9 C -0.100 4.100 10 C -0.089 4.089 11 C -0.136 4.136 12 C 0.536 3.464 13 O -0.573 6.573 14 N -0.636 5.636 15 C 0.013 3.987 16 C -0.114 4.114 17 C -0.157 4.157 18 C 0.074 3.926 19 C -0.498 4.498 20 H 0.075 0.925 21 C 0.029 3.971 22 N -0.839 5.839 23 Si 0.988 3.012 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.261 1.261 27 C -0.223 4.223 28 C -0.093 4.093 29 C -0.079 4.079 30 C -0.102 4.102 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.175 0.825 35 H 0.207 0.793 36 H 0.126 0.874 37 H 0.135 0.865 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.416 0.584 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.286 0.714 44 H 0.097 0.903 45 H 0.107 0.893 46 H 0.124 0.876 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 2.274 -27.333 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 N -0.263 5.263 4 C -0.210 4.210 5 C -0.179 4.179 6 N -0.132 5.132 7 C 0.022 3.978 8 C -0.091 4.091 9 C -0.118 4.118 10 C -0.108 4.108 11 C -0.139 4.139 12 C 0.326 3.674 13 O -0.453 6.453 14 N -0.280 5.280 15 C -0.080 4.080 16 C -0.134 4.134 17 C -0.177 4.177 18 C 0.072 3.928 19 C -0.528 4.528 20 H 0.093 0.907 21 C -0.184 4.184 22 N -0.466 5.466 23 Si 0.809 3.191 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.185 1.185 27 C -0.243 4.243 28 C -0.113 4.113 29 C -0.098 4.098 30 C -0.121 4.121 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.192 0.808 35 H 0.224 0.776 36 H 0.144 0.856 37 H 0.153 0.847 38 H 0.178 0.822 39 H 0.163 0.837 40 H 0.254 0.746 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.125 0.875 46 H 0.142 0.858 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.882 3.188 -26.956 27.420 hybrid contribution 0.492 -0.748 1.294 1.574 sum 4.374 2.440 -25.662 26.147 Atomic orbital electron populations 1.20362 0.83492 1.05159 1.03991 1.23781 0.96828 0.81558 1.04702 1.70191 1.03711 1.30315 1.22082 1.22636 0.94592 0.94440 1.09379 1.23184 0.87991 0.96528 1.10160 1.45588 1.06294 1.07382 1.53903 1.21064 1.05103 0.78646 0.92999 1.20365 0.93626 0.98471 0.96673 1.21299 1.00344 0.97386 0.92797 1.21543 0.94836 0.97709 0.96674 1.19934 0.96513 1.05149 0.92315 1.19001 0.84520 0.77075 0.86773 1.90739 1.23749 1.56162 1.74693 1.42768 1.13182 1.63077 1.08989 1.17271 0.97426 1.09566 0.83746 1.20521 0.98751 1.01675 0.92487 1.20924 0.97470 1.04886 0.94381 1.18029 0.90798 0.90415 0.93576 1.19742 1.29985 1.11861 0.91261 0.90730 1.26751 0.92199 0.93539 1.05865 1.69850 1.28614 1.11293 1.36881 0.85111 0.79866 0.78702 0.75435 1.18310 1.19479 1.18544 1.20905 0.98916 1.10743 0.93739 1.20518 0.96563 0.98344 0.95894 1.21344 0.98740 0.95524 0.94172 1.21294 0.97655 0.98742 0.94367 0.90242 0.89385 0.88029 0.80759 0.77600 0.85569 0.84726 0.82159 0.83668 0.74575 0.85610 0.87175 0.90316 0.88523 0.87518 0.85827 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.09 71.24 0.72 -0.06 16 2 C 0.19 3.39 7.90 138.13 1.09 4.48 16 3 N -0.54 -12.90 11.25 -188.13 -2.12 -15.02 16 4 C -0.06 -1.21 11.87 83.52 0.99 -0.22 16 5 C -0.05 -0.59 11.58 83.09 0.96 0.38 16 6 N -0.45 -5.48 2.73 -518.32 -1.42 -6.89 16 7 C 0.14 0.75 5.99 85.63 0.51 1.26 16 8 C -0.09 -0.96 5.47 -19.80 -0.11 -1.07 16 9 C -0.10 -1.15 9.70 22.23 0.22 -0.94 16 10 C -0.09 -1.53 9.54 22.53 0.21 -1.32 16 11 C -0.14 -3.42 5.87 -20.09 -0.12 -3.54 16 12 C 0.54 18.94 7.60 86.77 0.66 19.60 16 13 O -0.57 -25.49 13.78 -3.92 -0.05 -25.54 16 14 N -0.64 -21.71 5.25 -305.74 -1.60 -23.32 16 15 C 0.01 0.59 6.30 38.60 0.24 0.84 16 16 C -0.11 -5.14 9.90 22.14 0.22 -4.92 16 17 C -0.16 -8.19 8.57 22.48 0.19 -8.00 16 18 C 0.07 4.13 5.51 -21.28 -0.12 4.01 16 19 C -0.50 -27.48 9.03 23.39 0.21 -27.27 16 20 H 0.07 3.97 7.85 -2.91 -0.02 3.95 16 21 C 0.03 1.50 5.31 85.24 0.45 1.95 16 22 N -0.84 -44.71 10.94 21.82 0.24 -44.47 16 23 Si 0.99 39.09 29.56 68.60 2.03 41.12 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 27 C -0.22 -11.79 9.74 22.48 0.22 -11.57 16 28 C -0.09 -4.59 8.61 22.14 0.19 -4.40 16 29 C -0.08 -1.75 9.60 22.53 0.22 -1.53 16 30 C -0.10 -1.41 9.66 22.23 0.21 -1.20 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.10 0.43 6.84 -2.39 -0.02 0.41 16 34 H 0.18 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.13 0.13 7.05 -2.39 -0.02 0.12 16 37 H 0.13 -0.01 8.11 -2.38 -0.02 -0.02 16 38 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.15 1.94 6.41 -2.91 -0.02 1.92 16 40 H 0.42 10.41 6.86 -92.71 -0.64 9.77 16 41 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.11 5.94 6.44 -2.91 -0.02 5.92 16 43 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 44 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 45 H 0.11 5.22 6.24 -2.91 -0.02 5.20 16 46 H 0.12 3.08 7.65 -2.91 -0.02 3.06 16 47 H 0.16 1.22 7.71 -2.91 -0.02 1.19 16 Total: -1.00 -79.88 398.70 4.64 -75.24 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.38 Total: 32.42 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 7.18 Total: -33.53 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -4.90 Total: -89.70 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -79.88 4.64 -75.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038849886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.081 kcal (2) G-P(sol) polarization free energy of solvation -79.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds