Wall clock time and date at job start Tue Mar 31 2020 05:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 120.00023 * 2 1 4 4 C 1.50704 * 109.47139 * 270.00495 * 3 2 1 5 5 O 1.21293 * 119.99984 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99834 * 180.02562 * 4 3 2 7 7 C 1.39999 * 119.99591 * 175.48782 * 6 4 3 8 8 C 1.38921 * 119.99693 * 214.84534 * 7 6 4 9 9 C 1.38009 * 119.99118 * 179.76582 * 8 7 6 10 10 C 1.38899 * 120.00596 * 0.49129 * 9 8 7 11 11 O 1.35775 * 120.00350 * 179.74366 * 10 9 8 12 12 C 1.34814 * 117.00459 * 185.36220 * 11 10 9 13 13 H 1.07998 * 119.99935 * 354.96751 * 12 11 10 14 14 C 1.38629 * 119.99914 * 174.96336 * 12 11 10 15 15 N 1.31574 * 120.00339 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99812 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47290 * 90.00074 * 16 14 12 18 18 H 1.48501 * 109.46738 * 209.99928 * 16 14 12 19 19 H 1.48497 * 109.47018 * 329.99711 * 16 14 12 20 20 C 1.38916 * 120.00411 * 359.76328 * 10 9 8 21 21 C 1.38005 * 119.99719 * 0.02562 * 20 10 9 22 22 C 1.39065 * 120.00054 * 180.02562 * 2 1 3 23 23 C 1.39121 * 119.69044 * 4.99840 * 22 2 1 24 24 C 1.38299 * 119.10967 * 179.97438 * 23 22 2 25 25 C 1.38974 * 118.49431 * 0.02562 * 24 23 22 26 26 Cl 1.73601 * 120.34784 * 180.02562 * 25 24 23 27 27 C 1.38119 * 119.30411 * 359.97438 * 25 24 23 28 28 N 1.31986 * 120.84019 * 359.97438 * 27 25 24 29 29 H 1.08995 * 109.46987 * 269.99861 * 1 2 3 30 30 H 1.08999 * 109.47468 * 29.99646 * 1 2 3 31 31 H 1.08995 * 109.47193 * 149.99999 * 1 2 3 32 32 H 1.09001 * 109.47233 * 29.99911 * 3 2 1 33 33 H 1.08990 * 109.47305 * 150.00415 * 3 2 1 34 34 H 0.96998 * 120.00212 * 355.48557 * 6 4 3 35 35 H 1.07999 * 120.00604 * 0.02562 * 8 7 6 36 36 H 1.07998 * 119.99131 * 180.21045 * 9 8 7 37 37 H 0.97001 * 120.00131 * 179.97438 * 15 14 12 38 38 H 1.07997 * 120.00138 * 179.97438 * 20 10 9 39 39 H 1.08002 * 120.00115 * 179.97438 * 21 20 10 40 40 H 1.07996 * 120.44831 * 359.97438 * 23 22 2 41 41 H 1.08000 * 120.75486 * 180.02562 * 24 23 22 42 42 H 1.08000 * 119.58357 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 8 2.0549 1.0210 -2.3428 6 7 3.1116 2.8511 -1.6671 7 6 3.4277 3.2082 -2.9834 8 6 4.6150 3.8761 -3.2557 9 6 4.9288 4.2237 -4.5540 10 6 4.0529 3.9148 -5.5868 11 8 4.3593 4.2615 -6.8633 12 6 3.4191 4.0329 -7.8021 13 1 2.5065 3.5191 -7.5385 14 6 3.6237 4.4576 -9.1058 15 7 4.7357 5.0832 -9.4271 16 14 2.3206 4.1416 -10.4064 17 1 1.3733 5.2845 -10.4461 18 1 2.9714 3.9918 -11.7328 19 1 1.5814 2.8972 -10.0744 20 6 2.8632 3.2516 -5.3138 21 6 2.5513 2.9001 -4.0162 22 6 2.1604 -1.2043 -0.0005 23 6 1.4623 -2.4030 -0.1064 24 6 2.1659 -3.5937 -0.1062 25 6 3.5506 -3.5454 0.0008 26 17 4.4816 -5.0107 0.0053 27 6 4.1785 -2.3194 0.1026 28 7 3.4804 -1.1993 0.0987 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1384 0.5137 34 1 3.3697 3.4295 -0.9324 35 1 5.2943 4.1196 -2.4523 36 1 5.8533 4.7400 -4.7661 37 1 4.8791 5.3800 -10.3394 38 1 2.1821 3.0118 -6.1168 39 1 1.6262 2.3848 -3.8039 40 1 0.3854 -2.4039 -0.1876 41 1 1.6509 -4.5395 -0.1874 42 1 5.2544 -2.2767 0.1864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040554204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:32 Heat of formation + Delta-G solvation = 22.489998 kcal Electronic energy + Delta-G solvation = -28236.267080 eV Core-core repulsion = 24016.067802 eV Total energy + Delta-G solvation = -4220.199278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.098 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.77846 -39.97753 -38.68140 -37.20122 -36.58028 -35.97482 -33.94910 -32.81069 -32.18869 -30.73535 -30.19579 -29.40827 -27.65907 -25.86371 -25.17781 -23.80951 -22.60432 -22.11509 -21.26002 -20.07998 -18.29013 -18.00153 -17.63910 -17.11245 -16.91082 -16.51119 -16.27306 -15.38153 -15.08208 -14.81550 -14.68297 -14.49895 -14.16292 -13.98278 -13.67472 -13.57439 -13.48437 -13.33892 -12.87756 -12.81161 -12.62493 -12.36222 -12.29572 -12.14487 -11.69541 -11.55017 -11.49328 -11.42379 -11.00884 -10.75771 -10.43239 -10.32955 -10.12075 -9.77510 -9.66738 -9.61959 -9.17079 -8.68897 -8.20066 -7.86457 -6.92929 -6.43711 -4.01311 0.87708 0.98224 1.90156 2.09000 2.22104 2.45488 2.83399 3.14769 3.15309 3.20206 3.34032 3.56084 3.98480 4.12449 4.46845 4.55281 4.56451 4.68968 4.76416 4.83760 4.87062 5.06508 5.11097 5.19878 5.27080 5.28010 5.40618 5.52887 5.67645 5.68372 5.75228 6.02709 6.14166 6.18801 6.33262 6.43326 6.73644 6.84685 6.91529 7.02011 7.10816 7.30868 7.44724 7.68383 7.75087 7.79467 8.01482 8.37684 9.02091 9.71668 10.74258 Molecular weight = 361.10amu Principal moments of inertia in cm(-1) A = 0.011555 B = 0.002004 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.582936 B =13967.601760 C =14687.176867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.589 5.589 3 C 0.110 3.890 4 C 0.486 3.514 5 O -0.517 6.517 6 N -0.660 5.660 7 C 0.035 3.965 8 C -0.093 4.093 9 C -0.178 4.178 10 C 0.146 3.854 11 O -0.177 6.177 12 C -0.390 4.390 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.221 4.221 21 C -0.064 4.064 22 C 0.417 3.583 23 C -0.224 4.224 24 C -0.023 4.023 25 C -0.153 4.153 26 Cl -0.068 7.068 27 C 0.170 3.830 28 N -0.527 5.527 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.401 0.599 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -12.273 24.455 28.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.300 5.300 3 C -0.017 4.017 4 C 0.271 3.729 5 O -0.392 6.392 6 N -0.306 5.306 7 C -0.057 4.057 8 C -0.113 4.113 9 C -0.198 4.198 10 C 0.092 3.908 11 O -0.080 6.080 12 C -0.466 4.466 13 H 0.109 0.891 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 C -0.241 4.241 21 C -0.084 4.084 22 C 0.182 3.818 23 C -0.249 4.249 24 C -0.049 4.049 25 C -0.184 4.184 26 Cl -0.040 7.040 27 C 0.011 3.989 28 N -0.244 5.244 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.235 0.765 35 H 0.133 0.867 36 H 0.139 0.861 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.677 -11.758 23.564 27.168 hybrid contribution -0.840 -0.781 -0.505 1.254 sum -7.518 -12.539 23.058 27.302 Atomic orbital electron populations 1.21777 0.77582 1.03922 1.01372 1.45834 1.05172 1.01700 1.77285 1.21261 1.00134 0.86201 0.94127 1.21334 0.78697 0.80626 0.92249 1.90712 1.49395 1.53432 1.45685 1.43195 1.57669 1.22217 1.07500 1.17249 0.96589 1.08392 0.83480 1.20367 0.94415 1.00532 0.95961 1.19997 1.01242 1.08111 0.90455 1.19409 0.92618 0.92547 0.86194 1.83972 1.40742 1.71801 1.11503 1.21327 0.99009 1.38502 0.87803 0.89080 1.25280 0.97812 0.96113 0.97319 1.70045 1.24127 1.35808 1.19815 0.85716 0.79415 0.79046 0.79307 1.19878 1.20244 1.19173 1.21103 0.99674 1.06547 0.96794 1.20810 0.98234 0.97772 0.91575 1.18329 0.88304 0.85949 0.89193 1.21407 1.01511 0.90876 1.11084 1.21218 0.91824 0.98831 0.93042 1.21649 0.92983 0.88883 1.14919 1.98356 1.73103 1.35085 1.97426 1.22380 1.00000 0.85057 0.91507 1.67267 1.06297 1.30241 1.20636 0.92455 0.90657 0.90746 0.87833 0.86441 0.76463 0.86702 0.86060 0.92038 0.85298 0.85958 0.84050 0.84012 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 10.28 59.85 0.62 1.28 16 2 N -0.59 -5.80 2.48 -183.10 -0.45 -6.26 16 3 C 0.11 1.01 5.95 -5.19 -0.03 0.98 16 4 C 0.49 6.63 7.74 -10.98 -0.09 6.55 16 5 O -0.52 -9.44 13.87 5.55 0.08 -9.36 16 6 N -0.66 -8.70 5.34 -9.82 -0.05 -8.75 16 7 C 0.04 0.63 6.30 -83.62 -0.53 0.10 16 8 C -0.09 -1.63 9.96 -39.41 -0.39 -2.02 16 9 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 10 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 11 O -0.18 -5.11 9.75 0.02 0.00 -5.11 16 12 C -0.39 -11.09 9.48 30.88 0.29 -10.79 16 13 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 14 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 16 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 17 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.22 -5.08 9.16 -39.42 -0.36 -5.44 16 21 C -0.06 -1.30 8.69 -39.41 -0.34 -1.65 16 22 C 0.42 4.71 7.37 -154.98 -1.14 3.57 16 23 C -0.22 -2.11 9.27 -39.23 -0.36 -2.48 16 24 C -0.02 -0.21 9.97 -39.29 -0.39 -0.60 16 25 C -0.15 -1.52 6.34 -39.35 -0.25 -1.77 16 26 Cl -0.07 -0.62 28.98 -51.86 -1.50 -2.12 16 27 C 0.17 1.81 10.97 -17.53 -0.19 1.62 16 28 N -0.53 -6.41 9.08 -12.40 -0.11 -6.53 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.07 0.48 5.98 -51.93 -0.31 0.17 16 32 H 0.10 0.58 8.07 -51.93 -0.42 0.16 16 33 H 0.12 1.03 7.30 -51.93 -0.38 0.65 16 34 H 0.40 3.61 8.82 -40.82 -0.36 3.25 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.13 2.99 5.63 -52.49 -0.30 2.69 16 39 H 0.12 2.47 6.23 -52.49 -0.33 2.14 16 40 H 0.14 0.99 6.02 -52.49 -0.32 0.68 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -35.88 377.67 -8.89 -44.77 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.35 Total: 7.04 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.92 Total: -10.47 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.14 Total: -46.28 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.88 -8.89 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040554204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.259 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds