Wall clock time and date at job start Tue Mar 31 2020 05:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50702 * 109.46905 * 2 1 4 4 O 1.21284 * 119.99922 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99800 * 179.97438 * 3 2 1 6 6 C 1.39450 * 120.00075 * 185.58529 * 5 3 2 7 7 C 1.38836 * 120.09364 * 34.89368 * 6 5 3 8 8 C 1.37957 * 120.16126 * 179.97438 * 7 6 5 9 9 C 1.39153 * 120.34439 * 0.02562 * 8 7 6 10 10 N 1.39930 * 119.90566 * 180.02562 * 9 8 7 11 11 C 1.46963 * 110.99809 * 123.77419 * 10 9 8 12 12 C 1.53046 * 109.36182 * 176.80828 * 11 10 9 13 13 N 1.46963 * 109.36278 * 58.40724 * 12 11 10 14 14 C 1.46896 * 110.99921 * 176.80728 * 13 12 11 15 15 C 1.50702 * 109.47074 * 49.63940 * 14 13 12 16 16 H 1.08001 * 120.00250 * 5.21549 * 15 14 13 17 17 C 1.37880 * 119.99787 * 185.21441 * 15 14 13 18 18 N 1.31516 * 120.00295 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99687 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47384 * 60.00059 * 19 17 15 21 21 H 1.48507 * 109.46882 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47342 * 299.99779 * 19 17 15 23 23 C 1.46955 * 110.87897 * 300.67536 * 13 12 11 24 24 C 1.46949 * 110.99904 * 359.97438 * 10 9 8 25 25 C 1.38409 * 120.18584 * 359.97438 * 9 8 7 26 26 C 1.39730 * 119.83640 * 359.97438 * 25 9 8 27 27 C 1.47390 * 120.16726 * 179.97438 * 26 25 9 28 28 O 1.21513 * 119.99758 * 175.09000 * 27 26 25 29 29 O 1.34751 * 120.00261 * 355.09397 * 27 26 25 30 30 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46780 * 300.00018 * 1 2 3 32 32 H 1.08994 * 109.47193 * 59.99963 * 1 2 3 33 33 H 1.08998 * 109.46985 * 240.00429 * 2 1 3 34 34 H 1.08994 * 109.47193 * 120.00037 * 2 1 3 35 35 H 0.96993 * 119.99850 * 5.59059 * 5 3 2 36 36 H 1.08001 * 119.91734 * 359.96030 * 7 6 5 37 37 H 1.07996 * 119.82471 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.48806 * 296.78319 * 11 10 9 39 39 H 1.09004 * 109.48505 * 56.84505 * 11 10 9 40 40 H 1.08989 * 109.49517 * 298.43859 * 12 11 10 41 41 H 1.09005 * 109.48736 * 178.36799 * 12 11 10 42 42 H 1.09003 * 109.47375 * 169.63973 * 14 13 12 43 43 H 1.08996 * 109.47648 * 289.63735 * 14 13 12 44 44 H 0.97001 * 120.00102 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.49078 * 299.35562 * 23 13 12 46 46 H 1.08999 * 109.49313 * 179.28755 * 23 13 12 47 47 H 1.08999 * 109.49469 * 303.15245 * 24 10 9 48 48 H 1.09002 * 109.49654 * 63.20031 * 24 10 9 49 49 H 1.07996 * 120.07823 * 180.27747 * 25 9 8 50 50 H 0.96709 * 117.00072 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8233 2.9763 0.1181 7 6 3.1393 3.8903 0.9082 8 6 3.5992 5.1856 1.0259 9 6 4.7502 5.5866 0.3545 10 7 5.2088 6.9026 0.4808 11 6 6.5966 6.9326 0.9634 12 6 7.0858 8.3820 1.0119 13 7 6.2075 9.1634 1.8939 14 6 6.6890 10.5449 2.0265 15 6 6.9595 11.1161 0.6584 16 1 6.7117 10.5448 -0.2240 17 6 7.5235 12.3681 0.5333 18 7 7.8257 13.0636 1.6078 19 14 7.8581 13.0763 -1.1625 20 1 6.5828 13.1804 -1.9161 21 1 8.4638 14.4253 -1.0248 22 1 8.7945 12.1863 -1.8948 23 6 4.8198 9.1334 1.4113 24 6 4.3306 7.6839 1.3627 25 6 5.4433 4.6873 -0.4370 26 6 4.9849 3.3731 -0.5608 27 6 5.7170 2.4095 -1.4021 28 8 5.3681 1.2460 -1.4375 29 8 6.7732 2.8186 -2.1321 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9870 0.9338 -0.0809 36 1 2.2449 3.5865 1.4317 37 1 3.0627 5.8922 1.6416 38 1 6.6437 6.4992 1.9625 39 1 7.2293 6.3577 0.2871 40 1 7.0644 8.8068 0.0084 41 1 8.1051 8.4091 1.3970 42 1 5.9316 11.1471 2.5284 43 1 7.6079 10.5548 2.6125 44 1 8.2221 13.9445 1.5197 45 1 4.7727 9.5667 0.4122 46 1 4.1870 9.7082 2.0876 47 1 3.3112 7.6569 0.9776 48 1 4.3515 7.2590 2.3662 49 1 6.3389 4.9992 -0.9537 50 1 7.2213 2.1504 -2.6687 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045967709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:12 Heat of formation + Delta-G solvation = -76.300874 kcal Electronic energy + Delta-G solvation = -32447.852115 eV Core-core repulsion = 28054.325967 eV Total energy + Delta-G solvation = -4393.526148 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35515 -40.05315 -39.84667 -37.87053 -36.56377 -35.60082 -34.13151 -33.15523 -32.37213 -31.89593 -30.41333 -29.49114 -27.21159 -25.63305 -24.90542 -24.48198 -23.30920 -22.23203 -22.03158 -20.85805 -20.42797 -19.30911 -18.45005 -17.99081 -17.55022 -17.21354 -16.37953 -16.23859 -16.08990 -15.86749 -15.33541 -14.89184 -14.71774 -14.56417 -14.30460 -14.13722 -14.00301 -13.77563 -13.49296 -13.43817 -13.22951 -12.81317 -12.68166 -12.54749 -12.28327 -12.13439 -11.93117 -11.89384 -11.65823 -11.55340 -11.16383 -11.11823 -10.94257 -10.87934 -10.72279 -10.51272 -10.40317 -10.19343 -10.05750 -9.85734 -9.58567 -9.29644 -9.19455 -8.45860 -7.59443 -7.24687 -6.05536 -4.14621 0.39657 1.11998 2.24607 2.30522 2.69407 2.78223 3.27938 3.32912 3.35738 3.49164 3.88019 4.30507 4.38934 4.55292 4.66069 4.69739 4.74578 4.93947 4.99010 5.01666 5.13391 5.21355 5.25149 5.30565 5.40638 5.42119 5.50239 5.54794 5.67990 5.73600 5.75297 5.81925 5.85128 5.92786 5.95568 6.03613 6.08775 6.21893 6.26486 6.49031 6.55318 6.66474 6.77958 7.05299 7.14383 7.23475 7.28565 7.49651 7.52757 7.83755 7.86924 7.96146 8.19739 8.26582 8.95274 9.52501 10.99717 Molecular weight = 361.18amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002086 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.591963 B =13421.462716 C =14380.166379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.509 3.491 4 O -0.522 6.522 5 N -0.666 5.666 6 C 0.181 3.819 7 C -0.107 4.107 8 C -0.111 4.111 9 C 0.097 3.903 10 N -0.485 5.485 11 C 0.060 3.940 12 C 0.063 3.937 13 N -0.543 5.543 14 C 0.187 3.813 15 C -0.551 4.551 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.060 3.940 24 C 0.053 3.947 25 C -0.066 4.066 26 C -0.142 4.142 27 C 0.540 3.460 28 O -0.529 6.529 29 O -0.504 6.504 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.421 0.579 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.263 0.737 45 H 0.047 0.953 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.145 0.855 50 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.766 -27.034 -2.547 28.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.297 3.703 4 O -0.397 6.397 5 N -0.316 5.316 6 C 0.084 3.916 7 C -0.128 4.128 8 C -0.133 4.133 9 C -0.002 4.002 10 N -0.200 5.200 11 C -0.065 4.065 12 C -0.066 4.066 13 N -0.268 5.268 14 C 0.062 3.938 15 C -0.590 4.590 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.529 5.529 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.069 4.069 24 C -0.074 4.074 25 C -0.088 4.088 26 C -0.146 4.146 27 C 0.387 3.613 28 O -0.420 6.420 29 O -0.315 6.315 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.264 0.736 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.163 0.837 50 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -8.505 -26.186 -2.219 27.622 hybrid contribution 0.887 -0.120 -1.613 1.845 sum -7.618 -26.306 -3.832 27.654 Atomic orbital electron populations 1.21549 0.92646 1.01813 1.03540 1.21633 0.98829 0.92954 1.04799 1.21058 0.81573 0.92452 0.75175 1.90733 1.55145 1.46366 1.47440 1.43897 1.08435 1.07604 1.71696 1.17484 0.93152 0.85614 0.95352 1.20913 1.00690 0.92783 0.98377 1.21566 0.97251 0.96017 0.98453 1.19026 0.95397 0.89362 0.96401 1.59297 1.04577 1.07544 1.48548 1.22483 0.86118 0.99447 0.98501 1.21989 0.96782 0.89963 0.97857 1.62727 1.00859 1.16444 1.46768 1.19741 0.96127 0.81808 0.96135 1.21725 1.41806 1.01975 0.93516 0.92227 1.24964 0.95289 0.96960 0.96547 1.69933 1.42525 1.12328 1.28125 0.86695 0.78608 0.78240 0.84706 1.20260 1.21253 1.20212 1.21995 0.91810 0.92972 1.00106 1.22466 0.95779 0.94862 0.94265 1.20905 1.00418 0.90208 0.97232 1.18574 0.98993 0.93902 1.03150 1.20708 0.77459 0.86297 0.76869 1.90681 1.66808 1.19913 1.64610 1.84616 1.43006 1.46696 1.57188 0.91860 0.91824 0.91852 0.88539 0.88513 0.73605 0.84080 0.84212 0.93498 0.90465 0.92641 0.90633 0.95547 0.94553 0.92742 0.93469 0.90826 0.90371 0.93136 0.83704 0.72660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.20 37.16 0.34 -0.56 16 2 C -0.14 -0.90 6.42 -27.88 -0.18 -1.08 16 3 C 0.51 5.23 7.55 -10.98 -0.08 5.14 16 4 O -0.52 -7.10 13.78 5.55 0.08 -7.02 16 5 N -0.67 -6.80 4.69 -9.65 -0.05 -6.85 16 6 C 0.18 2.15 6.26 -83.41 -0.52 1.63 16 7 C -0.11 -1.29 8.63 -39.46 -0.34 -1.63 16 8 C -0.11 -1.35 8.80 -39.34 -0.35 -1.70 16 9 C 0.10 1.28 5.64 -83.76 -0.47 0.81 16 10 N -0.48 -7.18 4.76 -170.95 -0.81 -8.00 16 11 C 0.06 0.89 5.38 -3.77 -0.02 0.87 16 12 C 0.06 1.17 5.07 -3.77 -0.02 1.15 16 13 N -0.54 -11.11 4.92 -235.91 -1.16 -12.27 16 14 C 0.19 4.66 5.23 -4.98 -0.03 4.64 16 15 C -0.55 -14.74 7.75 -34.44 -0.27 -15.00 16 16 H 0.06 1.59 5.84 -52.49 -0.31 1.28 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C 0.06 1.10 5.40 -3.77 -0.02 1.08 16 24 C 0.05 0.78 4.29 -3.77 -0.02 0.76 16 25 C -0.07 -0.81 8.75 -38.96 -0.34 -1.15 16 26 C -0.14 -1.66 5.89 -104.85 -0.62 -2.28 16 27 C 0.54 5.64 8.25 34.46 0.28 5.93 16 28 O -0.53 -5.85 14.66 -19.28 -0.28 -6.13 16 29 O -0.50 -4.05 12.69 -40.63 -0.52 -4.57 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.42 3.78 6.30 -40.82 -0.26 3.53 16 36 H 0.14 1.69 6.53 -52.49 -0.34 1.35 16 37 H 0.14 1.53 5.78 -52.49 -0.30 1.23 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.01 6.80 -51.93 -0.35 0.65 16 40 H 0.06 1.16 6.14 -51.94 -0.32 0.84 16 41 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.03 0.70 7.95 -51.93 -0.41 0.29 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.05 0.97 7.42 -51.93 -0.39 0.58 16 46 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 47 H 0.08 1.02 7.16 -51.93 -0.37 0.65 16 48 H 0.05 0.71 7.58 -51.93 -0.39 0.31 16 49 H 0.15 1.68 6.72 -52.49 -0.35 1.32 16 50 H 0.41 1.34 9.11 45.56 0.42 1.75 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -32.51 398.35 -10.08 -42.59 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.31 Total: 4.76 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.74 Total: 0.33 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -1.28 Total: -52.13 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.72 Total: -17.72 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.51 -10.08 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045967709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.715 kcal (2) G-P(sol) polarization free energy of solvation -32.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds