Wall clock time and date at job start Tue Mar 31 2020 05:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36000 * 116.99804 * 2 1 4 4 C 1.38540 * 120.07104 * 0.02562 * 3 2 1 5 5 C 1.38245 * 120.02591 * 179.97438 * 4 3 2 6 6 C 1.38373 * 120.16672 * 0.02672 * 5 4 3 7 7 Cl 1.73607 * 119.93113 * 180.02562 * 6 5 4 8 8 C 1.38296 * 120.14154 * 359.74473 * 6 5 4 9 9 C 1.38723 * 119.96690 * 0.48180 * 8 6 5 10 10 N 1.40125 * 120.08008 * 179.79161 * 9 8 6 11 11 C 1.34776 * 120.00109 * 325.58272 * 10 9 8 12 12 O 1.21289 * 119.99874 * 4.12601 * 11 10 9 13 13 C 1.50701 * 119.99756 * 184.12642 * 11 10 9 14 14 O 1.42899 * 109.46655 * 179.97438 * 13 11 10 15 15 C 1.35676 * 116.99877 * 179.97438 * 14 13 11 16 16 C 1.39317 * 119.81783 * 359.72961 * 15 14 13 17 17 C 1.36433 * 120.18691 * 179.75823 * 16 15 14 18 18 C 1.40836 * 119.81030 * 0.51293 * 17 16 15 19 19 C 1.41216 * 120.17598 * 179.72070 * 18 17 16 20 20 H 1.08001 * 119.99518 * 214.71959 * 19 18 17 21 21 C 1.39883 * 120.00196 * 34.71972 * 19 18 17 22 22 N 1.30880 * 120.00334 * 355.74259 * 21 19 18 23 23 Si 1.86803 * 119.99797 * 175.74403 * 21 19 18 24 24 H 1.48502 * 109.47282 * 90.00164 * 23 21 19 25 25 H 1.48499 * 109.47095 * 209.99953 * 23 21 19 26 26 H 1.48495 * 109.47104 * 330.00045 * 23 21 19 27 27 C 1.40830 * 119.63928 * 359.74270 * 18 17 16 28 28 C 1.36434 * 119.81482 * 359.97438 * 27 18 17 29 29 H 1.08997 * 109.47178 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47035 * 300.00054 * 1 2 3 31 31 H 1.09003 * 109.47428 * 59.99556 * 1 2 3 32 32 H 1.07997 * 119.98862 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.91533 * 180.02562 * 5 4 3 34 34 H 1.07995 * 120.01816 * 180.25498 * 8 6 5 35 35 H 0.97007 * 119.99486 * 145.30721 * 10 9 8 36 36 H 1.08996 * 109.46775 * 300.00113 * 13 11 10 37 37 H 1.09000 * 109.47209 * 60.00378 * 13 11 10 38 38 H 1.08006 * 119.90437 * 0.02562 * 16 15 14 39 39 H 1.07999 * 120.09751 * 180.25473 * 17 16 15 40 40 H 0.97000 * 120.00021 * 179.97438 * 22 21 19 41 41 H 1.08004 * 120.08902 * 179.97438 * 27 18 17 42 42 H 1.08002 * 119.90675 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3746 0.0005 5 6 1.9217 3.6059 0.0011 6 6 3.3034 3.6813 0.0005 7 17 4.0864 5.2308 0.0019 8 6 4.0620 2.5250 0.0047 9 6 3.4372 1.2864 -0.0005 10 7 4.2035 0.1132 -0.0007 11 6 5.3806 0.0772 -0.6563 12 8 5.8124 1.0809 -1.1828 13 6 6.1601 -1.2101 -0.7350 14 8 7.3624 -0.9942 -1.4765 15 6 8.1846 -2.0609 -1.6409 16 6 7.8389 -3.2933 -1.0908 17 6 8.6577 -4.3721 -1.2557 18 6 9.8605 -4.2346 -1.9753 19 6 10.7166 -5.3447 -2.1456 20 1 11.7872 -5.2035 -2.1610 21 6 10.1779 -6.6271 -2.2944 22 7 8.8860 -6.8101 -2.1926 23 14 11.3026 -8.0784 -2.6384 24 1 11.7400 -8.6812 -1.3536 25 1 10.5704 -9.0935 -3.4375 26 1 12.4915 -7.6142 -3.3974 27 6 10.2050 -2.9840 -2.5235 28 6 9.3723 -1.9166 -2.3544 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2146 2.3192 0.0005 33 1 1.3328 4.5113 0.0019 34 1 5.1402 2.5861 0.0085 35 1 3.8887 -0.6717 0.4745 36 1 6.4088 -1.5463 0.2715 37 1 5.5577 -1.9697 -1.2334 38 1 6.9180 -3.3960 -0.5358 39 1 8.3863 -5.3278 -0.8321 40 1 8.5125 -7.6993 -2.2961 41 1 11.1259 -2.8703 -3.0763 42 1 9.6353 -0.9567 -2.7739 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047208912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:04 Heat of formation + Delta-G solvation = -77.783742 kcal Electronic energy + Delta-G solvation = -27926.591497 eV Core-core repulsion = 23669.751272 eV Total energy + Delta-G solvation = -4256.840225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 361.091 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03091 -40.88388 -40.09242 -38.65497 -38.07003 -37.24241 -35.89761 -35.15495 -31.97319 -31.53205 -31.15700 -30.83129 -29.06876 -28.04743 -26.59467 -24.35356 -23.37155 -23.06659 -22.46865 -21.49922 -19.65617 -19.28670 -18.94539 -18.55768 -17.88031 -17.49243 -17.16328 -16.94787 -16.67413 -16.49739 -16.01668 -15.76119 -15.51887 -15.35681 -14.94039 -14.74530 -14.56751 -14.37328 -14.20796 -13.62938 -13.52947 -13.45929 -13.28415 -13.16852 -12.93079 -12.83596 -12.74925 -12.35391 -12.32527 -11.99076 -11.85620 -11.68648 -11.62590 -11.43961 -11.26444 -10.94470 -10.93325 -9.76630 -9.56886 -8.97507 -8.79115 -8.47806 -6.28231 -0.01440 0.09094 0.91932 1.05143 1.09819 1.29456 1.41793 1.49976 1.50486 1.56397 2.18648 2.26622 2.50374 2.78423 2.80341 3.46663 3.65459 3.69722 3.86237 4.04699 4.08438 4.13384 4.23028 4.31222 4.39922 4.42738 4.45587 4.58002 4.65695 4.80717 4.83907 4.98976 5.03633 5.14187 5.17072 5.17849 5.41232 5.48373 5.50449 5.67205 5.95478 6.08516 6.16754 6.24995 6.26734 6.56305 6.75993 6.91765 7.00207 7.07565 8.46764 Molecular weight = 361.09amu Principal moments of inertia in cm(-1) A = 0.017281 B = 0.001804 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.903501 B =15519.071266 C =17010.878883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.113 3.887 4 C -0.171 4.171 5 C -0.077 4.077 6 C -0.066 4.066 7 Cl -0.071 7.071 8 C -0.097 4.097 9 C 0.109 3.891 10 N -0.647 5.647 11 C 0.521 3.479 12 O -0.542 6.542 13 C 0.046 3.954 14 O -0.322 6.322 15 C 0.010 3.990 16 C -0.179 4.179 17 C -0.138 4.138 18 C 0.046 3.954 19 C -0.498 4.498 20 H 0.072 0.928 21 C 0.027 3.973 22 N -0.846 5.846 23 Si 0.986 3.014 24 H -0.262 1.262 25 H -0.271 1.271 26 H -0.263 1.263 27 C -0.190 4.190 28 C -0.130 4.130 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.179 0.821 33 H 0.165 0.835 34 H 0.132 0.868 35 H 0.431 0.569 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.283 0.717 41 H 0.110 0.890 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.381 13.544 8.108 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.065 3.935 4 C -0.190 4.190 5 C -0.096 4.096 6 C -0.094 4.094 7 Cl -0.042 7.042 8 C -0.118 4.118 9 C 0.015 3.985 10 N -0.295 5.295 11 C 0.309 3.691 12 O -0.418 6.418 13 C -0.033 4.033 14 O -0.237 6.237 15 C -0.033 4.033 16 C -0.197 4.197 17 C -0.158 4.158 18 C 0.044 3.956 19 C -0.530 4.530 20 H 0.090 0.910 21 C -0.184 4.184 22 N -0.475 5.475 23 Si 0.807 3.193 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.187 1.187 27 C -0.210 4.210 28 C -0.149 4.149 29 H 0.136 0.864 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.196 0.804 33 H 0.182 0.818 34 H 0.150 0.850 35 H 0.271 0.729 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.150 0.850 39 H 0.138 0.862 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.027 14.135 7.628 27.261 hybrid contribution 0.442 -0.905 -0.045 1.008 sum -21.585 13.231 7.583 26.429 Atomic orbital electron populations 1.23457 0.75526 1.05970 1.02878 1.86059 1.24127 1.25416 1.88379 1.18869 0.89649 0.86500 0.98445 1.21385 1.01890 0.89781 1.05899 1.21167 0.91308 0.99617 0.97475 1.20727 0.93532 0.86196 1.08929 1.98365 1.81367 1.27366 1.97145 1.20959 1.01102 0.89876 0.99899 1.16957 0.87754 0.86366 1.07470 1.42945 1.19663 1.14621 1.52291 1.20591 0.81142 0.90144 0.77221 1.90716 1.68463 1.36630 1.46010 1.22392 0.86566 0.94639 0.99674 1.85883 1.31460 1.34291 1.72077 1.18757 0.93028 0.86241 1.05304 1.20930 1.01647 0.92366 1.04794 1.21217 0.96552 0.97866 1.00171 1.18026 0.94015 0.92658 0.90855 1.19647 0.94516 0.92091 1.46715 0.90978 1.26666 0.96907 1.02384 0.92423 1.69807 1.13314 1.24851 1.39525 0.85137 0.78443 0.76553 0.79132 1.18710 1.19536 1.18711 1.20905 1.01093 0.93757 1.05208 1.19893 0.93784 0.98920 1.02321 0.86417 0.90599 0.91329 0.80430 0.81780 0.85009 0.72913 0.86837 0.87381 0.84969 0.86179 0.90619 0.87171 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.20 16 2 O -0.33 -4.66 10.05 -93.55 -0.94 -5.60 16 3 C 0.11 1.94 6.70 22.60 0.15 2.09 16 4 C -0.17 -2.09 9.03 22.34 0.20 -1.88 16 5 C -0.08 -1.10 9.82 22.30 0.22 -0.88 16 6 C -0.07 -1.40 6.32 22.32 0.14 -1.25 16 7 Cl -0.07 -1.50 28.95 -2.72 -0.08 -1.57 16 8 C -0.10 -2.48 8.48 22.40 0.19 -2.29 16 9 C 0.11 2.49 6.33 38.18 0.24 2.73 16 10 N -0.65 -14.25 5.19 -303.14 -1.57 -15.82 16 11 C 0.52 15.34 7.75 87.66 0.68 16.02 16 12 O -0.54 -20.67 13.91 15.98 0.22 -20.45 16 13 C 0.05 1.33 5.21 71.24 0.37 1.71 16 14 O -0.32 -13.16 9.65 -70.90 -0.68 -13.85 16 15 C 0.01 0.47 6.71 22.79 0.15 0.62 16 16 C -0.18 -7.88 8.96 22.11 0.20 -7.68 16 17 C -0.14 -7.09 8.62 22.48 0.19 -6.90 16 18 C 0.05 2.50 5.55 -21.28 -0.12 2.39 16 19 C -0.50 -26.94 9.03 23.40 0.21 -26.73 16 20 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 21 C 0.03 1.38 5.42 85.23 0.46 1.84 16 22 N -0.85 -43.93 10.60 21.82 0.23 -43.70 16 23 Si 0.99 38.75 29.56 68.60 2.03 40.78 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 27 C -0.19 -9.49 9.74 22.48 0.22 -9.27 16 28 C -0.13 -6.12 9.92 22.11 0.22 -5.90 16 29 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.17 7.66 -2.38 -0.02 0.15 16 31 H 0.07 0.26 7.66 -2.39 -0.02 0.24 16 32 H 0.18 0.82 6.30 -2.91 -0.02 0.81 16 33 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.13 4.07 6.19 -2.91 -0.02 4.05 16 35 H 0.43 6.67 8.56 -92.70 -0.79 5.88 16 36 H 0.11 2.72 7.63 -2.39 -0.02 2.70 16 37 H 0.11 2.75 7.66 -2.39 -0.02 2.73 16 38 H 0.13 4.70 6.27 -2.91 -0.02 4.68 16 39 H 0.12 6.39 6.13 -2.91 -0.02 6.38 16 40 H 0.28 13.37 8.30 -92.71 -0.77 12.60 16 41 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -71.22 375.18 4.35 -66.87 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.30 Total: 27.55 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 4.85 Total: -34.20 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -1.34 Total: -59.52 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.40 Total: -39.89 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.57 kcal Total: -71.22 4.35 -66.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047208912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.917 kcal (2) G-P(sol) polarization free energy of solvation -71.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds