Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33641 * 122.75030 * 2 1 4 4 S 1.76194 * 107.92435 * 180.02562 * 3 2 1 5 5 C 1.70980 * 90.28441 * 0.02562 * 4 3 2 6 6 C 1.50701 * 124.91726 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.46883 * 270.02259 * 6 5 4 8 8 C 1.34784 * 119.99912 * 180.02562 * 7 6 5 9 9 O 1.21585 * 119.99784 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00080 * 179.97438 * 8 7 6 11 11 C 1.39944 * 119.99987 * 185.31424 * 10 8 7 12 12 C 1.38924 * 120.04229 * 213.27923 * 11 10 8 13 13 C 1.38123 * 120.04090 * 180.02562 * 12 11 10 14 14 C 1.38217 * 120.12243 * 359.68399 * 13 12 11 15 15 C 1.38765 * 120.08088 * 0.59851 * 14 13 12 16 16 O 1.35896 * 120.01777 * 179.69857 * 15 14 13 17 17 C 1.42898 * 117.00001 * 359.72172 * 16 15 14 18 18 C 1.53006 * 109.46880 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.46758 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00695 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99743 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99810 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00056 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47361 * 59.99820 * 23 21 19 25 25 H 1.48500 * 109.47554 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47114 * 299.99866 * 23 21 19 27 27 C 1.38632 * 119.95848 * 359.42216 * 15 14 13 28 28 N 1.29023 * 110.16502 * 0.23835 * 5 4 3 29 29 H 1.09004 * 109.47398 * 89.98983 * 1 2 3 30 30 H 1.09000 * 109.47273 * 209.99495 * 1 2 3 31 31 H 1.08999 * 109.47419 * 329.99275 * 1 2 3 32 32 H 1.07997 * 126.03835 * 0.04630 * 3 2 1 33 33 H 1.08999 * 109.47176 * 150.02076 * 6 5 4 34 34 H 1.08997 * 109.47236 * 30.01997 * 6 5 4 35 35 H 0.96997 * 120.00365 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00208 * 5.32529 * 10 8 7 37 37 H 1.07997 * 119.97989 * 0.03111 * 12 11 10 38 38 H 1.08003 * 119.94174 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.95529 * 180.31812 * 14 13 12 40 40 H 1.08997 * 109.47710 * 300.00021 * 17 16 15 41 41 H 1.08997 * 109.47031 * 60.00479 * 17 16 15 42 42 H 1.08998 * 109.47468 * 300.00214 * 18 17 16 43 43 H 1.08997 * 109.46837 * 60.00434 * 18 17 16 44 44 H 0.96999 * 119.99834 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.06046 * 180.25706 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4834 -2.1271 -0.0033 7 7 4.8003 -2.4967 -1.3850 8 6 5.6611 -3.5039 -1.6327 9 8 6.1743 -4.1059 -0.7094 10 7 5.9522 -3.8443 -2.9039 11 6 6.7575 -4.9591 -3.1628 12 6 7.6113 -4.9609 -4.2586 13 6 8.4057 -6.0615 -4.5144 14 6 8.3583 -7.1607 -3.6779 15 6 7.5030 -7.1667 -2.5852 16 8 7.4529 -8.2507 -1.7670 17 6 8.3037 -9.3509 -2.0950 18 6 8.1105 -10.4687 -1.0682 19 6 9.0083 -11.6287 -1.4137 20 1 9.6526 -11.5741 -2.2787 21 6 9.0072 -12.7599 -0.6254 22 7 8.2230 -12.8263 0.4283 23 14 10.1205 -14.1976 -1.0531 24 1 11.5362 -13.7496 -1.0358 25 1 9.9320 -15.2831 -0.0574 26 1 9.7779 -14.7033 -2.4067 27 6 6.7038 -6.0641 -2.3255 28 7 2.2199 -1.1083 -0.0065 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.8392 2.1308 0.0007 33 1 4.0435 -2.9823 0.5098 34 1 5.3961 -1.8253 0.5104 35 1 4.3906 -2.0167 -2.1216 36 1 5.6037 -3.3164 -3.6393 37 1 7.6541 -4.1012 -4.9108 38 1 9.0687 -6.0613 -5.3671 39 1 8.9844 -8.0177 -3.8775 40 1 8.0515 -9.7219 -3.0883 41 1 9.3430 -9.0226 -2.0828 42 1 8.3631 -10.0975 -0.0750 43 1 7.0712 -10.7971 -1.0799 44 1 8.2220 -13.6222 0.9827 45 1 6.0406 -6.0654 -1.4731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047736068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = 3.765975 kcal Electronic energy + Delta-G solvation = -27502.211581 eV Core-core repulsion = 23419.077168 eV Total energy + Delta-G solvation = -4083.134412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88973 -40.37554 -39.35572 -37.33655 -35.49015 -34.57345 -33.30226 -32.52705 -30.80996 -29.75811 -29.09914 -28.33009 -27.69559 -24.99829 -23.61971 -22.76231 -22.06815 -21.33512 -20.39799 -20.26235 -19.01485 -18.42785 -17.90280 -16.68832 -16.23081 -16.03444 -15.72265 -15.64032 -15.33988 -15.22740 -15.21805 -14.75556 -14.54179 -14.36173 -14.19290 -13.62135 -13.37826 -13.15566 -13.01912 -12.88837 -12.82385 -12.63040 -12.27312 -11.84374 -11.73974 -11.64372 -11.38224 -10.87604 -10.84662 -10.57278 -10.38682 -10.23583 -10.12208 -9.98612 -9.76954 -9.59816 -9.53696 -9.31844 -9.25432 -8.40069 -8.17243 -7.76170 -6.04899 -4.09608 0.03028 0.76851 1.16943 1.45443 1.69826 2.02134 2.47935 2.92332 3.32352 3.36471 3.38257 3.39984 3.72323 4.03595 4.05601 4.28368 4.46182 4.58865 4.69572 4.88911 5.04378 5.08392 5.12032 5.22707 5.23769 5.31163 5.38265 5.42224 5.49837 5.69978 5.71569 5.87095 5.91721 6.07753 6.10844 6.22657 6.40369 6.57052 6.65540 6.70111 6.81601 7.04754 7.17294 7.57320 7.58959 7.71280 7.87130 8.14061 8.24844 8.29648 8.95853 9.54241 11.06620 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.001515 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.586711 B =18477.544060 C =19702.377759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.065 3.935 3 C -0.258 4.258 4 S 0.147 5.853 5 C 0.025 3.975 6 C 0.218 3.782 7 N -0.739 5.739 8 C 0.705 3.295 9 O -0.557 6.557 10 N -0.681 5.681 11 C 0.196 3.804 12 C -0.198 4.198 13 C -0.061 4.061 14 C -0.227 4.227 15 C 0.165 3.835 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 C -0.162 4.162 28 N -0.450 5.450 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.179 0.821 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.398 0.602 36 H 0.406 0.594 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.131 0.869 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.264 0.736 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 33.530 -6.937 36.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.398 4.398 4 S 0.402 5.598 5 C -0.253 4.253 6 C 0.091 3.909 7 N -0.397 5.397 8 C 0.405 3.595 9 O -0.431 6.431 10 N -0.329 5.329 11 C 0.101 3.899 12 C -0.218 4.218 13 C -0.080 4.080 14 C -0.247 4.247 15 C 0.117 3.883 16 O -0.225 6.225 17 C -0.009 4.009 18 C -0.013 4.013 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.184 4.184 28 N -0.166 5.166 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.197 0.803 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.232 0.768 36 H 0.241 0.759 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.149 0.851 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.231 32.846 -5.676 35.174 hybrid contribution -0.590 -0.214 -1.039 1.214 sum -11.821 32.633 -6.715 35.351 Atomic orbital electron populations 1.20394 0.86756 1.03659 1.03199 1.20390 0.98533 0.86286 1.01493 1.26991 0.95390 1.04240 1.13133 1.84162 1.06816 1.02197 1.66616 1.26922 0.94088 0.98447 1.05843 1.19575 0.94874 0.93181 0.83282 1.44964 1.48759 1.37785 1.08204 1.15801 0.79833 0.80442 0.83391 1.91051 1.54744 1.54538 1.42808 1.42464 1.53355 1.30273 1.06786 1.17012 0.91964 0.85234 0.95655 1.20561 1.00322 1.00389 1.00571 1.20636 0.97098 0.92125 0.98095 1.21378 1.04065 1.01359 0.97852 1.18950 0.92693 0.87621 0.89048 1.86194 1.62590 1.23994 1.49679 1.23343 0.91725 0.84844 1.00987 1.19127 0.98457 0.89982 0.93686 1.20941 1.23706 0.99876 1.11989 0.92402 1.24991 0.95727 0.98600 0.94872 1.69971 1.38096 1.28949 1.15685 0.86546 0.80963 0.81667 0.78166 1.20106 1.21150 1.20126 1.20295 1.04042 0.90717 1.03298 1.66152 1.04410 1.31861 1.14190 0.90442 0.90278 0.90566 0.80327 0.87961 0.88811 0.76795 0.75873 0.86178 0.85717 0.85072 0.93068 0.93055 0.95327 0.95382 0.92682 0.84072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.31 36.00 0.37 -0.01 16 2 C 0.07 0.47 6.74 -84.23 -0.57 -0.10 16 3 C -0.26 -1.41 11.13 29.12 0.32 -1.08 16 4 S 0.15 0.84 23.18 -107.50 -2.49 -1.66 16 5 C 0.03 0.19 6.76 -13.46 -0.09 0.10 16 6 C 0.22 1.84 6.25 -5.20 -0.03 1.81 16 7 N -0.74 -6.17 5.55 -66.42 -0.37 -6.54 16 8 C 0.71 8.51 8.30 -86.92 -0.72 7.79 16 9 O -0.56 -9.38 14.02 5.29 0.07 -9.31 16 10 N -0.68 -7.11 5.35 -14.24 -0.08 -7.18 16 11 C 0.20 2.70 6.28 -83.71 -0.53 2.17 16 12 C -0.20 -2.36 9.96 -39.37 -0.39 -2.75 16 13 C -0.06 -0.78 10.03 -39.63 -0.40 -1.18 16 14 C -0.23 -3.65 9.04 -39.39 -0.36 -4.00 16 15 C 0.16 3.11 6.68 -39.24 -0.26 2.84 16 16 O -0.31 -6.89 10.13 -19.41 -0.20 -7.09 16 17 C 0.07 1.45 4.68 37.16 0.17 1.63 16 18 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -15.00 9.11 -34.44 -0.31 -15.32 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 23 Si 0.90 21.61 29.54 -169.99 -5.02 16.58 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.16 -2.84 8.59 -39.25 -0.34 -3.18 16 28 N -0.45 -4.10 10.53 -8.06 -0.08 -4.18 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.22 8.12 -51.93 -0.42 -0.21 16 32 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 2.29 8.48 -40.82 -0.35 1.94 16 36 H 0.41 2.56 8.83 -40.82 -0.36 2.20 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 40 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 41 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.14 2.71 6.41 -52.49 -0.34 2.37 16 LS Contribution 400.10 15.07 6.03 6.03 Total: -1.00 -35.73 400.10 -10.71 -46.44 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.94 Total: 2.28 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.37 Total: -9.12 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.21 Total: -44.15 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.12 Total: -16.40 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.73 -10.71 -46.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047736068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.205 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds