Wall clock time and date at job start Tue Mar 31 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33641 * 122.75030 * 2 1 4 4 S 1.76194 * 107.92435 * 180.02562 * 3 2 1 5 5 C 1.70980 * 90.28441 * 0.02562 * 4 3 2 6 6 C 1.50701 * 124.91726 * 179.97438 * 5 4 3 7 7 N 1.46494 * 109.46883 * 270.02259 * 6 5 4 8 8 C 1.34784 * 119.99912 * 180.02562 * 7 6 5 9 9 O 1.21585 * 119.99784 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00080 * 179.97438 * 8 7 6 11 11 C 1.39944 * 119.99987 * 185.31424 * 10 8 7 12 12 C 1.38924 * 120.04229 * 213.27923 * 11 10 8 13 13 C 1.38123 * 120.04090 * 180.02562 * 12 11 10 14 14 C 1.38217 * 120.12243 * 359.68399 * 13 12 11 15 15 C 1.38765 * 120.08088 * 0.59851 * 14 13 12 16 16 O 1.35896 * 120.01777 * 179.69857 * 15 14 13 17 17 C 1.42898 * 117.00001 * 359.72172 * 16 15 14 18 18 C 1.53006 * 109.46880 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.46758 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00695 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99743 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99810 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00056 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47361 * 59.99820 * 23 21 19 25 25 H 1.48500 * 109.47554 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47114 * 299.99866 * 23 21 19 27 27 C 1.38632 * 119.95848 * 359.42216 * 15 14 13 28 28 N 1.29023 * 110.16502 * 0.23835 * 5 4 3 29 29 H 1.09004 * 109.47398 * 89.98983 * 1 2 3 30 30 H 1.09000 * 109.47273 * 209.99495 * 1 2 3 31 31 H 1.08999 * 109.47419 * 329.99275 * 1 2 3 32 32 H 1.07997 * 126.03835 * 0.04630 * 3 2 1 33 33 H 1.08999 * 109.47176 * 150.02076 * 6 5 4 34 34 H 1.08997 * 109.47236 * 30.01997 * 6 5 4 35 35 H 0.96997 * 120.00365 * 0.02562 * 7 6 5 36 36 H 0.97000 * 120.00208 * 5.32529 * 10 8 7 37 37 H 1.07997 * 119.97989 * 0.03111 * 12 11 10 38 38 H 1.08003 * 119.94174 * 179.97438 * 13 12 11 39 39 H 1.07996 * 119.95529 * 180.31812 * 14 13 12 40 40 H 1.08997 * 109.47710 * 300.00021 * 17 16 15 41 41 H 1.08997 * 109.47031 * 60.00479 * 17 16 15 42 42 H 1.08998 * 109.47468 * 300.00214 * 18 17 16 43 43 H 1.08997 * 109.46837 * 60.00434 * 18 17 16 44 44 H 0.96999 * 119.99834 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.06046 * 180.25706 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4834 -2.1271 -0.0033 7 7 4.8003 -2.4967 -1.3850 8 6 5.6611 -3.5039 -1.6327 9 8 6.1743 -4.1059 -0.7094 10 7 5.9522 -3.8443 -2.9039 11 6 6.7575 -4.9591 -3.1628 12 6 7.6113 -4.9609 -4.2586 13 6 8.4057 -6.0615 -4.5144 14 6 8.3583 -7.1607 -3.6779 15 6 7.5030 -7.1667 -2.5852 16 8 7.4529 -8.2507 -1.7670 17 6 8.3037 -9.3509 -2.0950 18 6 8.1105 -10.4687 -1.0682 19 6 9.0083 -11.6287 -1.4137 20 1 9.6526 -11.5741 -2.2787 21 6 9.0072 -12.7599 -0.6254 22 7 8.2230 -12.8263 0.4283 23 14 10.1205 -14.1976 -1.0531 24 1 11.5362 -13.7496 -1.0358 25 1 9.9320 -15.2831 -0.0574 26 1 9.7779 -14.7033 -2.4067 27 6 6.7038 -6.0641 -2.3255 28 7 2.2199 -1.1083 -0.0065 29 1 -0.3634 0.0002 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8899 0.5139 32 1 1.8392 2.1308 0.0007 33 1 4.0435 -2.9823 0.5098 34 1 5.3961 -1.8253 0.5104 35 1 4.3906 -2.0167 -2.1216 36 1 5.6037 -3.3164 -3.6393 37 1 7.6541 -4.1012 -4.9108 38 1 9.0687 -6.0613 -5.3671 39 1 8.9844 -8.0177 -3.8775 40 1 8.0515 -9.7219 -3.0883 41 1 9.3430 -9.0226 -2.0828 42 1 8.3631 -10.0975 -0.0750 43 1 7.0712 -10.7971 -1.0799 44 1 8.2220 -13.6222 0.9827 45 1 6.0406 -6.0654 -1.4731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047736068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:20 Heat of formation + Delta-G solvation = -21.605566 kcal Electronic energy + Delta-G solvation = -27503.311773 eV Core-core repulsion = 23419.077168 eV Total energy + Delta-G solvation = -4084.234605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88421 -41.01075 -40.62231 -38.63057 -36.34794 -35.76915 -35.35188 -33.10241 -32.58240 -31.02110 -30.37003 -28.91456 -28.33509 -26.98569 -24.58903 -23.65071 -23.54529 -22.60693 -21.73134 -20.82033 -19.93874 -19.62069 -18.63668 -18.34312 -17.49914 -17.13940 -16.93535 -16.81773 -16.61536 -16.41001 -16.29829 -16.06753 -15.54824 -15.26955 -14.93961 -14.46976 -14.44362 -14.32228 -14.25989 -14.12734 -13.67640 -13.39578 -13.34470 -13.28849 -13.17265 -12.71084 -12.61942 -12.58594 -12.27156 -12.24820 -11.79551 -11.62699 -11.49571 -11.37128 -11.16518 -10.76299 -10.61345 -10.50272 -10.37801 -9.78927 -9.37765 -8.97729 -8.25774 -6.40417 -0.48122 0.27215 0.30641 0.51747 0.69260 1.30770 1.41126 1.46060 1.53975 1.78774 1.92887 2.28205 2.51189 2.85539 2.86922 3.08227 3.13558 3.74619 3.94264 4.18276 4.20927 4.23215 4.25090 4.27935 4.28268 4.31697 4.46194 4.46838 4.59534 4.71579 4.75814 4.76934 4.80198 4.93528 5.10028 5.23022 5.29622 5.31212 5.34330 5.43659 5.45629 5.54660 5.68699 5.80172 5.93662 6.07392 6.58667 6.67595 6.74352 6.82099 7.29781 7.33259 8.87402 Molecular weight = 361.12amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.001515 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.586711 B =18477.544060 C =19702.377759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 C -0.247 4.247 4 S 0.189 5.811 5 C 0.004 3.996 6 C 0.220 3.780 7 N -0.719 5.719 8 C 0.703 3.297 9 O -0.610 6.610 10 N -0.664 5.664 11 C 0.198 3.802 12 C -0.173 4.173 13 C -0.051 4.051 14 C -0.235 4.235 15 C 0.124 3.876 16 O -0.346 6.346 17 C 0.085 3.915 18 C 0.026 3.974 19 C -0.547 4.547 20 H 0.074 0.926 21 C -0.001 4.001 22 N -0.933 5.933 23 Si 0.980 3.020 24 H -0.263 1.263 25 H -0.283 1.283 26 H -0.262 1.262 27 C -0.187 4.187 28 N -0.482 5.482 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.209 0.791 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.414 0.586 36 H 0.430 0.570 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.133 0.867 40 H 0.065 0.935 41 H 0.062 0.938 42 H -0.006 1.006 43 H -0.004 1.004 44 H 0.267 0.733 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 36.343 -10.246 39.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.386 4.386 4 S 0.443 5.557 5 C -0.273 4.273 6 C 0.093 3.907 7 N -0.376 5.376 8 C 0.403 3.597 9 O -0.488 6.488 10 N -0.314 5.314 11 C 0.103 3.897 12 C -0.194 4.194 13 C -0.069 4.069 14 C -0.255 4.255 15 C 0.078 3.922 16 O -0.261 6.261 17 C 0.011 3.989 18 C -0.011 4.011 19 C -0.585 4.585 20 H 0.092 0.908 21 C -0.199 4.199 22 N -0.572 5.572 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.208 1.208 26 H -0.186 1.186 27 C -0.209 4.209 28 N -0.199 5.199 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.226 0.774 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.251 0.749 36 H 0.269 0.731 37 H 0.187 0.813 38 H 0.185 0.815 39 H 0.151 0.849 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.075 0.925 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.195 35.735 -9.046 38.246 hybrid contribution -1.026 -0.841 -0.013 1.327 sum -11.221 34.894 -9.059 37.757 Atomic orbital electron populations 1.20455 0.85534 1.04068 1.03777 1.20745 0.99558 0.86307 1.02560 1.27405 0.95167 1.05142 1.10905 1.83989 1.06647 0.99699 1.65331 1.26657 0.93737 0.99443 1.07439 1.19474 0.95261 0.93030 0.82971 1.44758 1.47359 1.36599 1.08922 1.15999 0.79890 0.80581 0.83265 1.91032 1.56798 1.56410 1.44560 1.42250 1.52692 1.29400 1.07052 1.17144 0.92424 0.84765 0.95399 1.21079 0.97599 1.01354 0.99358 1.21134 0.96986 0.90703 0.98077 1.21523 1.03542 1.02911 0.97519 1.19253 0.95314 0.87097 0.90553 1.86097 1.63202 1.25109 1.51668 1.22892 0.92404 0.84062 0.99570 1.18983 0.96491 0.91973 0.93628 1.21380 1.24048 1.00382 1.12651 0.90759 1.26111 0.97304 1.02037 0.94459 1.70138 1.39975 1.30057 1.17012 0.85278 0.78843 0.77219 0.78348 1.18728 1.20846 1.18617 1.20251 1.04510 0.92320 1.03777 1.66137 1.05222 1.33612 1.14907 0.89762 0.91626 0.88405 0.77407 0.90321 0.88403 0.74927 0.73061 0.81281 0.81524 0.84947 0.91652 0.92017 0.98774 0.98541 0.92476 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.31 71.23 0.73 0.06 16 2 C 0.04 0.53 6.74 41.52 0.28 0.81 16 3 C -0.25 -2.12 11.13 66.78 0.74 -1.37 16 4 S 0.19 1.80 23.18 -56.49 -1.31 0.49 16 5 C 0.00 0.06 6.76 88.52 0.60 0.66 16 6 C 0.22 3.92 6.25 85.63 0.54 4.46 16 7 N -0.72 -11.90 5.55 -482.31 -2.68 -14.58 16 8 C 0.70 17.18 8.30 179.05 1.49 18.67 16 9 O -0.61 -21.90 14.02 -3.99 -0.06 -21.96 16 10 N -0.66 -12.88 5.35 -317.23 -1.70 -14.58 16 11 C 0.20 5.22 6.28 38.13 0.24 5.46 16 12 C -0.17 -3.43 9.96 22.41 0.22 -3.21 16 13 C -0.05 -1.12 10.03 22.24 0.22 -0.89 16 14 C -0.24 -7.37 9.04 22.39 0.20 -7.17 16 15 C 0.12 4.89 6.68 22.49 0.15 5.04 16 16 O -0.35 -16.52 10.13 -92.38 -0.94 -17.45 16 17 C 0.08 3.98 4.68 71.98 0.34 4.32 16 18 C 0.03 1.53 5.34 29.85 0.16 1.69 16 19 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 20 H 0.07 3.99 7.74 -2.91 -0.02 3.97 16 21 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 22 N -0.93 -58.76 13.29 21.45 0.28 -58.47 16 23 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 27 C -0.19 -6.90 8.59 22.48 0.19 -6.71 16 28 N -0.48 -8.80 10.53 -179.40 -1.89 -10.69 16 29 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.36 8.12 -2.39 -0.02 0.34 16 32 H 0.21 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.41 4.21 8.48 -92.71 -0.79 3.42 16 36 H 0.43 4.07 8.83 -92.71 -0.82 3.25 16 37 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 39 H 0.13 4.02 6.29 -2.91 -0.02 4.00 16 40 H 0.07 2.81 7.67 -2.39 -0.02 2.80 16 41 H 0.06 2.70 7.65 -2.39 -0.02 2.68 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 45 H 0.11 4.66 6.41 -2.91 -0.02 4.64 16 Total: -1.00 -84.78 400.10 -0.01 -84.79 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.56 Total: 15.37 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 6.80 Total: -9.47 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.98 Total: -98.31 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -0.99 Total: -39.41 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.31 Total: 0.49 kcal Total: -84.78 -0.01 -84.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047736068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.184 kcal (2) G-P(sol) polarization free energy of solvation -84.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds