Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39750 * 125.83855 * 2 1 4 4 C 1.36112 * 107.83023 * 180.13736 * 3 2 1 5 5 N 1.39471 * 126.21900 * 179.89777 * 4 3 2 6 6 C 1.34780 * 119.99702 * 359.69219 * 5 4 3 7 7 O 1.21294 * 120.00356 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 6 11 11 C 1.38265 * 119.99223 * 90.00030 * 10 9 8 12 12 C 1.38221 * 120.02734 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.01140 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00559 * 179.97438 * 13 12 11 15 15 C 1.38331 * 119.98673 * 0.02562 * 13 12 11 16 16 Cl 1.73597 * 120.01243 * 180.02562 * 15 13 12 17 17 C 1.38190 * 119.99325 * 269.72535 * 10 9 8 18 18 N 1.35261 * 107.56210 * 359.63570 * 4 3 2 19 19 C 1.46508 * 126.04162 * 180.22859 * 18 4 3 20 20 C 1.50692 * 109.46818 * 89.99989 * 19 18 4 21 21 H 1.07996 * 120.00692 * 359.97438 * 20 19 18 22 22 C 1.37886 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00080 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99940 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47393 * 89.99616 * 24 22 20 26 26 H 1.48500 * 109.46932 * 210.00006 * 24 22 20 27 27 H 1.48504 * 109.46981 * 329.99469 * 24 22 20 28 28 N 1.30851 * 125.83817 * 179.72334 * 2 1 3 29 29 H 1.08999 * 109.47521 * 270.24441 * 1 2 3 30 30 H 1.08992 * 109.47228 * 30.24608 * 1 2 3 31 31 H 1.08999 * 109.46677 * 150.24463 * 1 2 3 32 32 H 1.08003 * 126.08849 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00288 * 179.68469 * 5 4 3 34 34 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 35 35 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 36 36 H 1.09002 * 109.47153 * 299.99998 * 9 8 6 37 37 H 1.08998 * 109.47533 * 59.99628 * 9 8 6 38 38 H 1.08001 * 119.98672 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.99603 * 180.02562 * 12 11 10 40 40 H 1.08995 * 109.47738 * 90.00103 * 14 13 12 41 41 H 1.09002 * 109.47085 * 210.00377 * 14 13 12 42 42 H 1.08999 * 109.46837 * 329.99671 * 14 13 12 43 43 H 1.07995 * 120.00716 * 0.02562 * 17 10 9 44 44 H 1.09001 * 109.46345 * 209.99798 * 19 18 4 45 45 H 1.09001 * 109.47103 * 329.99738 * 19 18 4 46 46 H 0.97001 * 120.00049 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7121 -0.0031 5 7 4.7513 1.5274 -0.0062 6 6 4.6157 2.8684 -0.0125 7 8 3.5096 3.3661 -0.0160 8 6 5.8383 3.7493 -0.0152 9 6 5.4089 5.2178 -0.0231 10 6 6.6315 6.0988 -0.0252 11 6 7.1944 6.4971 -1.2236 12 6 8.3154 7.3056 -1.2264 13 6 8.8749 7.7160 -0.0308 14 6 10.0975 8.5970 -0.0339 15 6 8.3128 7.3170 1.1686 16 17 9.0144 7.8326 2.6704 17 6 7.1865 6.5131 1.1706 18 7 3.6092 -0.6404 0.0032 19 6 4.7871 -1.5116 0.0074 20 6 5.1908 -1.8036 1.4296 21 1 4.6268 -1.3822 2.2485 22 6 6.2804 -2.6090 1.6854 23 7 6.6330 -2.8634 2.9265 24 14 7.2564 -3.3374 0.2690 25 1 8.3480 -2.4051 -0.1112 26 1 7.8392 -4.6379 0.6867 27 1 6.3580 -3.5485 -0.8944 28 7 2.2732 -1.0608 0.0051 29 1 -0.3634 0.0044 1.0276 30 1 -0.3633 0.8877 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 1.9902 2.1597 0.0004 33 1 5.6358 1.1295 -0.0036 34 1 6.4325 3.5490 0.8764 35 1 6.4345 3.5408 -0.9036 36 1 4.8149 5.4179 -0.9149 37 1 4.8125 5.4268 0.8650 38 1 6.7579 6.1763 -2.1580 39 1 8.7544 7.6167 -2.1628 40 1 9.7916 9.6432 -0.0398 41 1 10.6916 8.3972 0.8578 42 1 10.6937 8.3878 -0.9221 43 1 6.7443 6.2053 2.1066 44 1 4.5499 -2.4456 -0.5021 45 1 5.6085 -1.0145 -0.5088 46 1 7.3998 -3.4297 3.1065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048290777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = 44.366146 kcal Electronic energy + Delta-G solvation = -28427.704495 eV Core-core repulsion = 24344.286932 eV Total energy + Delta-G solvation = -4083.417563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96448 -40.03613 -39.20387 -36.82093 -34.98448 -34.69276 -33.76783 -32.19415 -31.71246 -31.07736 -29.55927 -28.59541 -27.18738 -26.32867 -24.19924 -23.16725 -22.52427 -21.49778 -20.79106 -19.75184 -19.30430 -17.24001 -17.12106 -16.76548 -16.46592 -16.07627 -15.62072 -15.56107 -15.02687 -14.62423 -14.50314 -14.21878 -14.02702 -13.98109 -13.35357 -13.16675 -13.15158 -12.84204 -12.72672 -12.70488 -12.58728 -12.43571 -12.31912 -11.90992 -11.89447 -11.78537 -11.67903 -11.50836 -11.19303 -11.15173 -10.98966 -10.85520 -10.50049 -10.24965 -9.98481 -9.78181 -9.56978 -9.16185 -8.88383 -8.82549 -7.97694 -7.50825 -6.35386 -4.39962 0.80832 0.91101 1.84442 2.19169 2.72417 3.04155 3.05380 3.15324 3.16369 3.24787 3.54212 3.67794 4.12318 4.28728 4.39142 4.52477 4.71793 4.74952 4.82309 4.90797 4.98040 5.02908 5.22189 5.23058 5.28065 5.28501 5.34924 5.48047 5.59427 5.65266 5.71525 5.88200 5.91523 6.00518 6.01440 6.04628 6.12428 6.19831 6.22497 6.30170 6.35328 6.48077 6.62167 6.73136 7.18162 7.42752 7.53280 7.74279 8.15378 8.28687 8.55454 8.70965 9.19155 10.76845 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.002298 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.648109 B =12180.711842 C =14135.742029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.293 4.293 4 C 0.304 3.696 5 N -0.642 5.642 6 C 0.520 3.480 7 O -0.515 6.515 8 C -0.132 4.132 9 C -0.064 4.064 10 C -0.073 4.073 11 C -0.106 4.106 12 C -0.108 4.108 13 C -0.082 4.082 14 C -0.119 4.119 15 C -0.035 4.035 16 Cl -0.070 7.070 17 C -0.101 4.101 18 N -0.344 5.344 19 C 0.230 3.770 20 C -0.546 4.546 21 H 0.081 0.919 22 C 0.080 3.920 23 N -0.883 5.883 24 Si 0.871 3.129 25 H -0.271 1.271 26 H -0.278 1.278 27 H -0.263 1.263 28 N -0.283 5.283 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.415 0.585 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.135 0.865 44 H 0.054 0.946 45 H 0.035 0.965 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 22.262 -8.675 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C -0.325 4.325 4 C 0.082 3.918 5 N -0.288 5.288 6 C 0.307 3.693 7 O -0.389 6.389 8 C -0.172 4.172 9 C -0.102 4.102 10 C -0.074 4.074 11 C -0.125 4.125 12 C -0.126 4.126 13 C -0.083 4.083 14 C -0.176 4.176 15 C -0.061 4.061 16 Cl -0.041 7.041 17 C -0.120 4.120 18 N -0.129 5.129 19 C 0.111 3.889 20 C -0.584 4.584 21 H 0.099 0.901 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.697 3.303 25 H -0.196 1.196 26 H -0.203 1.203 27 H -0.188 1.188 28 N -0.108 5.108 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.252 0.748 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.153 0.847 44 H 0.072 0.928 45 H 0.052 0.948 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.269 21.235 -8.409 23.235 hybrid contribution 1.424 0.004 -0.278 1.451 sum 5.693 21.239 -8.687 23.643 Atomic orbital electron populations 1.20032 0.87427 1.02361 1.02320 1.22062 0.96587 0.91005 1.01441 1.21280 0.88983 1.00503 1.21685 1.17952 0.88231 0.83079 1.02536 1.42854 1.08125 1.05815 1.72048 1.20635 0.91591 0.81230 0.75886 1.90642 1.26953 1.73683 1.47638 1.21638 0.95956 0.94035 1.05537 1.20349 0.93910 0.90713 1.05199 1.19826 0.97099 0.98051 0.92388 1.21193 0.95812 0.97454 0.98001 1.20994 0.96308 0.98238 0.97075 1.19778 0.97909 0.99083 0.91495 1.20869 0.94610 0.98630 1.03494 1.20810 0.97070 1.01495 0.86773 1.98366 1.83705 1.89830 1.32161 1.21012 0.94642 0.97283 0.99063 1.48900 1.06196 1.02054 1.55786 1.19928 0.79260 0.90048 0.99675 1.21188 1.14261 1.32651 0.90300 0.90078 1.24825 0.96627 0.95213 0.95783 1.69869 1.26789 1.36689 1.18558 0.86924 0.80768 0.79781 0.82820 1.19641 1.20336 1.18753 1.77362 0.85795 1.21769 1.25876 0.91153 0.91074 0.91517 0.81952 0.74832 0.87961 0.88248 0.89537 0.89560 0.85191 0.85134 0.90744 0.90819 0.91109 0.84684 0.92765 0.94773 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 2 C 0.05 1.07 7.21 -82.44 -0.59 0.48 16 3 C -0.29 -5.85 9.58 -39.78 -0.38 -6.23 16 4 C 0.30 6.21 7.66 -153.16 -1.17 5.04 16 5 N -0.64 -10.54 5.42 -11.46 -0.06 -10.61 16 6 C 0.52 7.42 7.79 -10.98 -0.09 7.33 16 7 O -0.51 -8.65 13.11 5.55 0.07 -8.58 16 8 C -0.13 -1.27 5.68 -27.88 -0.16 -1.43 16 9 C -0.06 -0.58 4.63 -27.89 -0.13 -0.71 16 10 C -0.07 -0.63 5.13 -104.63 -0.54 -1.17 16 11 C -0.11 -0.82 9.70 -39.58 -0.38 -1.20 16 12 C -0.11 -0.80 9.70 -39.59 -0.38 -1.18 16 13 C -0.08 -0.67 5.88 -104.59 -0.62 -1.29 16 14 C -0.12 -0.76 9.62 36.01 0.35 -0.41 16 15 C -0.03 -0.33 6.31 -39.50 -0.25 -0.58 16 16 Cl -0.07 -0.64 27.30 -51.86 -1.42 -2.05 16 17 C -0.10 -0.94 9.48 -39.55 -0.38 -1.31 16 18 N -0.34 -7.84 3.60 -61.57 -0.22 -8.06 16 19 C 0.23 5.35 5.07 -5.19 -0.03 5.32 16 20 C -0.55 -14.82 9.94 -34.44 -0.34 -15.17 16 21 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 22 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 23 N -0.88 -25.57 13.96 55.43 0.77 -24.80 16 24 Si 0.87 19.38 27.47 -169.99 -4.67 14.71 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 28 N -0.28 -6.47 12.56 33.65 0.42 -6.05 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.16 3.13 5.83 -52.48 -0.31 2.83 16 33 H 0.42 6.15 7.96 -40.82 -0.33 5.83 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.78 8.04 -51.93 -0.42 0.36 16 37 H 0.09 0.85 8.04 -51.93 -0.42 0.43 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.49 6.90 -51.93 -0.36 0.13 16 42 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 43 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.05 1.29 7.20 -51.93 -0.37 0.91 16 45 H 0.03 0.71 6.93 -51.93 -0.36 0.35 16 46 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -33.11 401.88 -10.23 -43.33 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.37 Total: 7.04 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -4.81 Total: -10.98 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.91 Total: -49.52 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.67 Total: 14.71 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.42 Total: -2.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.11 -10.23 -43.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048290777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.701 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds