Wall clock time and date at job start Tue Mar 31 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39750 * 125.83855 * 2 1 4 4 C 1.36112 * 107.83023 * 180.13736 * 3 2 1 5 5 N 1.39471 * 126.21900 * 179.89777 * 4 3 2 6 6 C 1.34780 * 119.99702 * 359.69219 * 5 4 3 7 7 O 1.21294 * 120.00356 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 6 5 10 10 C 1.50697 * 109.47466 * 179.97438 * 9 8 6 11 11 C 1.38265 * 119.99223 * 90.00030 * 10 9 8 12 12 C 1.38221 * 120.02734 * 179.97438 * 11 10 9 13 13 C 1.38238 * 120.01140 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00559 * 179.97438 * 13 12 11 15 15 C 1.38331 * 119.98673 * 0.02562 * 13 12 11 16 16 Cl 1.73597 * 120.01243 * 180.02562 * 15 13 12 17 17 C 1.38190 * 119.99325 * 269.72535 * 10 9 8 18 18 N 1.35261 * 107.56210 * 359.63570 * 4 3 2 19 19 C 1.46508 * 126.04162 * 180.22859 * 18 4 3 20 20 C 1.50692 * 109.46818 * 89.99989 * 19 18 4 21 21 H 1.07996 * 120.00692 * 359.97438 * 20 19 18 22 22 C 1.37886 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00080 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99940 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47393 * 89.99616 * 24 22 20 26 26 H 1.48500 * 109.46932 * 210.00006 * 24 22 20 27 27 H 1.48504 * 109.46981 * 329.99469 * 24 22 20 28 28 N 1.30851 * 125.83817 * 179.72334 * 2 1 3 29 29 H 1.08999 * 109.47521 * 270.24441 * 1 2 3 30 30 H 1.08992 * 109.47228 * 30.24608 * 1 2 3 31 31 H 1.08999 * 109.46677 * 150.24463 * 1 2 3 32 32 H 1.08003 * 126.08849 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00288 * 179.68469 * 5 4 3 34 34 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 35 35 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 36 36 H 1.09002 * 109.47153 * 299.99998 * 9 8 6 37 37 H 1.08998 * 109.47533 * 59.99628 * 9 8 6 38 38 H 1.08001 * 119.98672 * 359.97438 * 11 10 9 39 39 H 1.07996 * 119.99603 * 180.02562 * 12 11 10 40 40 H 1.08995 * 109.47738 * 90.00103 * 14 13 12 41 41 H 1.09002 * 109.47085 * 210.00377 * 14 13 12 42 42 H 1.08999 * 109.46837 * 329.99671 * 14 13 12 43 43 H 1.07995 * 120.00716 * 0.02562 * 17 10 9 44 44 H 1.09001 * 109.46345 * 209.99798 * 19 18 4 45 45 H 1.09001 * 109.47103 * 329.99738 * 19 18 4 46 46 H 0.97001 * 120.00049 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7121 -0.0031 5 7 4.7513 1.5274 -0.0062 6 6 4.6157 2.8684 -0.0125 7 8 3.5096 3.3661 -0.0160 8 6 5.8383 3.7493 -0.0152 9 6 5.4089 5.2178 -0.0231 10 6 6.6315 6.0988 -0.0252 11 6 7.1944 6.4971 -1.2236 12 6 8.3154 7.3056 -1.2264 13 6 8.8749 7.7160 -0.0308 14 6 10.0975 8.5970 -0.0339 15 6 8.3128 7.3170 1.1686 16 17 9.0144 7.8326 2.6704 17 6 7.1865 6.5131 1.1706 18 7 3.6092 -0.6404 0.0032 19 6 4.7871 -1.5116 0.0074 20 6 5.1908 -1.8036 1.4296 21 1 4.6268 -1.3822 2.2485 22 6 6.2804 -2.6090 1.6854 23 7 6.6330 -2.8634 2.9265 24 14 7.2564 -3.3374 0.2690 25 1 8.3480 -2.4051 -0.1112 26 1 7.8392 -4.6379 0.6867 27 1 6.3580 -3.5485 -0.8944 28 7 2.2732 -1.0608 0.0051 29 1 -0.3634 0.0044 1.0276 30 1 -0.3633 0.8877 -0.5176 31 1 -0.3633 -0.8922 -0.5100 32 1 1.9902 2.1597 0.0004 33 1 5.6358 1.1295 -0.0036 34 1 6.4325 3.5490 0.8764 35 1 6.4345 3.5408 -0.9036 36 1 4.8149 5.4179 -0.9149 37 1 4.8125 5.4268 0.8650 38 1 6.7579 6.1763 -2.1580 39 1 8.7544 7.6167 -2.1628 40 1 9.7916 9.6432 -0.0398 41 1 10.6916 8.3972 0.8578 42 1 10.6937 8.3878 -0.9221 43 1 6.7443 6.2053 2.1066 44 1 4.5499 -2.4456 -0.5021 45 1 5.6085 -1.0145 -0.5088 46 1 7.3998 -3.4297 3.1065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048290777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:08 Heat of formation + Delta-G solvation = 26.100002 kcal Electronic energy + Delta-G solvation = -28428.496575 eV Core-core repulsion = 24344.286932 eV Total energy + Delta-G solvation = -4084.209642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 361.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.44804 -40.86760 -40.29334 -37.50133 -36.29526 -35.64652 -35.44523 -33.98684 -32.47766 -31.67894 -31.12042 -29.97028 -28.08024 -27.95011 -25.08049 -24.27762 -23.76904 -22.62911 -21.60843 -21.20620 -20.66493 -19.27172 -18.48290 -17.98144 -17.23499 -16.95602 -16.71276 -16.53656 -16.24156 -16.10359 -15.62239 -15.41116 -15.04144 -14.85753 -14.71127 -14.39147 -14.26382 -14.16184 -13.81356 -13.76911 -13.53479 -13.46508 -13.22443 -13.14095 -13.11407 -12.90654 -12.54771 -12.47577 -12.27743 -12.15675 -12.12731 -11.88973 -11.86950 -11.75510 -11.65956 -11.45083 -10.92546 -10.90673 -9.78553 -9.62002 -9.45401 -9.06947 -8.43227 -6.56009 0.18534 0.29337 0.78502 1.18357 1.30862 1.32425 1.39933 1.47554 1.64383 2.05965 2.21055 2.24286 2.63838 2.88373 3.42272 3.78301 3.81550 3.83571 4.01359 4.07157 4.11793 4.23280 4.32448 4.41168 4.45491 4.58509 4.59163 4.64808 4.69043 4.74385 4.78683 4.87936 4.89232 4.90503 4.95082 4.99048 5.13119 5.17276 5.19191 5.22277 5.25064 5.30227 5.47719 5.58968 5.86722 5.90046 5.98900 6.21983 6.34298 6.48531 6.94623 7.02655 7.09374 8.73269 Molecular weight = 361.13amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.002298 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.648109 B =12180.711842 C =14135.742029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.307 4.307 4 C 0.302 3.698 5 N -0.642 5.642 6 C 0.520 3.480 7 O -0.540 6.540 8 C -0.120 4.120 9 C -0.057 4.057 10 C -0.078 4.078 11 C -0.105 4.105 12 C -0.108 4.108 13 C -0.088 4.088 14 C -0.119 4.119 15 C -0.052 4.052 16 Cl -0.077 7.077 17 C -0.115 4.115 18 N -0.368 5.368 19 C 0.239 3.761 20 C -0.554 4.554 21 H 0.021 0.979 22 C 0.024 3.976 23 N -0.935 5.935 24 Si 0.950 3.050 25 H -0.244 1.244 26 H -0.280 1.280 27 H -0.247 1.247 28 N -0.330 5.330 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.422 0.578 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.131 0.869 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 23.355 -11.657 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.339 4.339 4 C 0.079 3.921 5 N -0.290 5.290 6 C 0.309 3.691 7 O -0.415 6.415 8 C -0.160 4.160 9 C -0.095 4.095 10 C -0.078 4.078 11 C -0.123 4.123 12 C -0.126 4.126 13 C -0.089 4.089 14 C -0.176 4.176 15 C -0.079 4.079 16 Cl -0.048 7.048 17 C -0.134 4.134 18 N -0.153 5.153 19 C 0.119 3.881 20 C -0.592 4.592 21 H 0.039 0.961 22 C -0.176 4.176 23 N -0.573 5.573 24 Si 0.771 3.229 25 H -0.167 1.167 26 H -0.206 1.206 27 H -0.170 1.170 28 N -0.155 5.155 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.187 0.813 33 H 0.260 0.740 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.149 0.851 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.514 22.368 -11.394 25.702 hybrid contribution 0.942 -0.217 0.743 1.219 sum 6.455 22.152 -10.651 25.413 Atomic orbital electron populations 1.20229 0.83959 1.04203 1.03580 1.22900 0.98756 0.90157 0.98811 1.21504 0.89131 1.00851 1.22435 1.18373 0.89845 0.82723 1.01139 1.43104 1.07391 1.06255 1.72252 1.21543 0.92729 0.80558 0.74260 1.90619 1.28517 1.73840 1.48549 1.21701 0.93848 0.93116 1.07311 1.20254 0.94102 0.90346 1.04756 1.19755 0.96979 0.98432 0.92666 1.21464 0.95664 0.96905 0.98302 1.21319 0.96005 0.97553 0.97713 1.20091 0.98393 0.99029 0.91413 1.20910 0.94004 0.98663 1.03986 1.20979 0.97547 1.02304 0.87048 1.98357 1.83805 1.89928 1.32735 1.21088 0.95029 0.97859 0.99386 1.48826 1.06088 1.02826 1.57562 1.19740 0.80583 0.90727 0.97050 1.21214 1.14057 1.32925 0.90966 0.96076 1.25844 0.97606 0.95159 0.99004 1.70035 1.27832 1.37838 1.21563 0.85695 0.79514 0.78900 0.78839 1.16718 1.20580 1.17027 1.77298 0.86319 1.23554 1.28335 0.90031 0.88408 0.90490 0.81312 0.73997 0.87065 0.85311 0.89240 0.90862 0.83157 0.82607 0.90043 0.91492 0.89458 0.85080 0.93119 0.91416 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.24 0.74 -0.96 16 2 C 0.06 2.34 7.21 43.07 0.31 2.65 16 3 C -0.31 -12.28 9.58 22.14 0.21 -12.07 16 4 C 0.30 12.35 7.66 131.32 1.01 13.36 16 5 N -0.64 -20.64 5.42 -308.55 -1.67 -22.31 16 6 C 0.52 14.27 7.79 87.66 0.68 14.95 16 7 O -0.54 -17.80 13.11 -3.07 -0.04 -17.84 16 8 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 9 C -0.06 -0.95 4.63 29.85 0.14 -0.81 16 10 C -0.08 -1.22 5.13 -19.87 -0.10 -1.32 16 11 C -0.11 -1.32 9.70 22.27 0.22 -1.10 16 12 C -0.11 -1.28 9.70 22.27 0.22 -1.06 16 13 C -0.09 -1.30 5.88 -19.84 -0.12 -1.41 16 14 C -0.12 -1.28 9.62 71.24 0.69 -0.60 16 15 C -0.05 -0.93 6.31 22.33 0.14 -0.79 16 16 Cl -0.08 -1.40 27.30 -2.72 -0.07 -1.48 16 17 C -0.11 -2.05 9.48 22.29 0.21 -1.84 16 18 N -0.37 -16.94 3.60 -348.71 -1.26 -18.20 16 19 C 0.24 11.05 5.07 85.63 0.43 11.49 16 20 C -0.55 -30.99 9.94 25.60 0.25 -30.73 16 21 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 22 C 0.02 1.32 5.47 84.66 0.46 1.78 16 23 N -0.93 -55.68 13.96 21.45 0.30 -55.38 16 24 Si 0.95 39.13 27.47 68.60 1.88 41.01 16 25 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 26 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.25 -9.47 6.54 99.48 0.65 -8.82 16 28 N -0.33 -15.35 12.56 -47.45 -0.60 -15.94 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.17 6.47 5.83 -2.91 -0.02 6.45 16 33 H 0.42 12.01 7.96 -92.71 -0.74 11.28 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.45 8.04 -2.39 -0.02 1.43 16 37 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 0.82 6.90 -2.39 -0.02 0.80 16 42 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 45 H 0.07 2.66 6.93 -2.39 -0.02 2.64 16 46 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -75.62 401.88 4.43 -71.19 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.22 Total: 29.34 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 5.67 Total: -10.39 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -3.22 Total: -111.83 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.04 Total: -17.84 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.88 Total: 41.01 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.48 kcal Total: -75.62 4.43 -71.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048290777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.287 kcal (2) G-P(sol) polarization free energy of solvation -75.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds