Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30834 * 125.89994 * 2 1 4 4 N 1.40090 * 108.20671 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03584 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46992 * 90.02714 * 5 4 3 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47094 * 90.00289 * 10 8 6 12 12 H 1.48505 * 109.47195 * 210.00171 * 10 8 6 13 13 H 1.48493 * 109.47449 * 330.00136 * 10 8 6 14 14 C 1.34941 * 107.92327 * 0.26786 * 4 3 2 15 15 C 1.50699 * 126.12677 * 179.73607 * 14 4 3 16 16 C 1.35323 * 107.74923 * 359.57504 * 14 4 3 17 17 C 1.50699 * 126.04366 * 180.16267 * 16 14 4 18 18 C 1.52998 * 109.46942 * 270.33427 * 17 16 14 19 19 C 1.50706 * 109.46765 * 179.97438 * 18 17 16 20 20 O 1.21280 * 120.00245 * 359.97438 * 19 18 17 21 21 N 1.34773 * 119.99733 * 179.97438 * 19 18 17 22 22 C 1.47065 * 120.25256 * 359.97438 * 21 19 18 23 23 C 1.53505 * 107.51677 * 229.93337 * 22 21 19 24 24 O 1.42694 * 108.52290 * 304.90120 * 23 22 21 25 25 C 1.42811 * 115.46312 * 64.22710 * 24 23 22 26 26 H 1.08998 * 111.92281 * 67.48527 * 25 24 23 27 27 C 1.55300 * 107.32588 * 191.54164 * 25 24 23 28 28 C 1.55395 * 104.06522 * 77.74183 * 27 25 24 29 29 C 1.54025 * 106.46900 * 23.83391 * 28 27 25 30 30 C 1.45882 * 120.25216 * 179.72921 * 21 19 18 31 31 H 1.09001 * 109.90392 * 13.69257 * 30 21 19 32 32 H 1.09003 * 109.47277 * 89.97257 * 1 2 3 33 33 H 1.09000 * 109.47175 * 209.97453 * 1 2 3 34 34 H 1.09004 * 109.47059 * 329.97096 * 1 2 3 35 35 H 1.09002 * 109.47391 * 330.02705 * 5 4 3 36 36 H 1.09001 * 109.46813 * 210.02761 * 5 4 3 37 37 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 38 38 H 1.08996 * 109.47571 * 90.02184 * 15 14 4 39 39 H 1.09001 * 109.47471 * 210.02200 * 15 14 4 40 40 H 1.08998 * 109.47301 * 330.01810 * 15 14 4 41 41 H 1.09003 * 109.46615 * 30.32846 * 17 16 14 42 42 H 1.08998 * 109.47033 * 150.32690 * 17 16 14 43 43 H 1.08996 * 109.47046 * 299.99872 * 18 17 16 44 44 H 1.09001 * 109.47278 * 60.00238 * 18 17 16 45 45 H 1.09003 * 109.85240 * 349.43633 * 22 21 19 46 46 H 1.08998 * 109.85178 * 110.36719 * 22 21 19 47 47 H 1.09008 * 109.62384 * 64.60773 * 23 22 21 48 48 H 1.08993 * 109.63013 * 184.99192 * 23 22 21 49 49 H 1.09002 * 110.49177 * 196.53705 * 27 25 24 50 50 H 1.08998 * 110.49206 * 319.18592 * 27 25 24 51 51 H 1.09002 * 109.99301 * 264.63365 * 28 27 25 52 52 H 1.09008 * 110.21067 * 143.15895 * 28 27 25 53 53 H 1.08999 * 110.08444 * 240.71309 * 29 28 27 54 54 H 1.09001 * 110.12489 * 119.17985 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.1956 1.7964 1.4207 7 1 4.6305 1.3800 2.2414 8 6 6.2890 2.5977 1.6729 9 7 6.9774 3.1043 0.6735 10 14 6.7922 2.9635 3.4342 11 1 7.7535 1.9314 3.8989 12 1 7.4332 4.3016 3.4982 13 1 5.5901 2.9485 4.3059 14 6 3.6142 -0.7153 -0.0070 15 6 4.8350 -1.5989 -0.0154 16 6 2.3271 -1.1331 -0.0007 17 6 1.8598 -2.5658 -0.0010 18 6 1.7018 -3.0504 -1.4436 19 6 1.2351 -4.4833 -1.4438 20 8 1.0479 -5.0603 -0.3936 21 7 1.0259 -5.1236 -2.6111 22 6 1.2507 -4.4292 -3.8879 23 6 0.0026 -4.6422 -4.7557 24 8 -0.2379 -6.0443 -4.8675 25 6 -0.5592 -6.7115 -3.6464 26 1 -1.5271 -6.3990 -3.2545 27 6 -0.4906 -8.2383 -3.9217 28 6 1.0308 -8.5545 -3.9198 29 6 1.7054 -7.4496 -3.0852 30 6 0.5798 -6.5126 -2.6179 31 1 0.2367 -6.7970 -1.6231 32 1 -0.3634 0.0005 -1.0277 33 1 -0.3633 -0.8902 0.5134 34 1 -0.3633 0.8898 0.5143 35 1 4.5561 2.4338 -0.5130 36 1 5.6091 0.9987 -0.5151 37 1 7.7464 3.6683 0.8510 38 1 5.1328 -1.8171 1.0101 39 1 4.6059 -2.5303 -0.5332 40 1 5.6494 -1.0885 -0.5295 41 1 2.5934 -3.1872 0.5127 42 1 0.9011 -2.6354 0.5129 43 1 0.9684 -2.4289 -1.9573 44 1 2.6606 -2.9808 -1.9574 45 1 1.3995 -3.3643 -3.7088 46 1 2.1253 -4.8461 -4.3871 47 1 -0.8556 -4.1598 -4.2876 48 1 0.1675 -4.2160 -5.7452 49 1 -0.9991 -8.7916 -3.1321 50 1 -0.9266 -8.4709 -4.8932 51 1 1.4157 -8.5400 -4.9395 52 1 1.2124 -9.5289 -3.4662 53 1 2.4192 -6.9000 -3.6989 54 1 2.2110 -7.8861 -2.2238 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053382644.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = -43.610434 kcal Electronic energy + Delta-G solvation = -33111.235315 eV Core-core repulsion = 28854.959826 eV Total energy + Delta-G solvation = -4256.275489 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 361.215 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.19263 -41.72727 -39.73919 -36.67221 -36.09994 -35.89897 -34.85994 -34.20030 -31.82691 -30.68464 -30.53237 -29.35786 -28.56467 -27.63738 -27.48859 -25.25781 -24.42428 -23.87800 -21.55631 -21.51668 -20.32255 -20.17155 -19.63403 -18.82930 -18.39372 -17.89940 -17.29782 -17.05743 -16.73876 -16.44750 -16.26932 -16.01803 -15.68013 -15.19936 -15.12782 -14.90615 -14.64834 -14.43206 -14.33215 -14.06089 -13.96417 -13.80127 -13.60093 -13.36625 -13.25399 -13.20746 -12.99977 -12.88098 -12.82892 -12.66951 -12.63926 -12.58815 -12.52956 -12.25081 -12.18443 -12.11090 -11.89110 -11.72070 -11.68089 -11.26323 -11.16647 -11.02066 -10.75808 -10.73484 -9.84517 -9.53909 -9.03541 -8.35923 -6.53395 1.16697 1.34588 1.35779 1.47100 1.58669 1.77805 1.93566 2.01975 2.32155 2.75884 2.93546 3.42849 3.54451 3.64843 3.85204 3.90647 3.93390 3.98401 4.12372 4.19343 4.22601 4.26250 4.31855 4.32612 4.43241 4.47399 4.55336 4.58868 4.63452 4.66955 4.71367 4.72563 4.78950 4.81700 4.86511 4.87893 4.89668 4.94047 4.94662 5.02423 5.03046 5.13199 5.18005 5.19450 5.28537 5.38822 5.42733 5.49257 5.53710 5.56187 5.79526 6.04887 6.25753 6.30575 6.31079 6.61445 7.11212 7.13562 7.17882 8.70016 Molecular weight = 361.22amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.001946 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.035823 B =14386.141515 C =14743.292901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 N -0.349 5.349 4 N -0.355 5.355 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.273 1.273 13 H -0.277 1.277 14 C 0.079 3.921 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.123 4.123 19 C 0.517 3.483 20 O -0.577 6.577 21 N -0.608 5.608 22 C 0.066 3.934 23 C 0.047 3.953 24 O -0.384 6.384 25 C 0.078 3.922 26 H 0.078 0.922 27 C -0.113 4.113 28 C -0.112 4.112 29 C -0.126 4.126 30 C 0.104 3.896 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.020 0.980 36 H 0.047 0.953 37 H 0.274 0.726 38 H 0.075 0.925 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.129 0.871 49 H 0.094 0.906 50 H 0.085 0.915 51 H 0.069 0.931 52 H 0.077 0.923 53 H 0.065 0.935 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -22.759 -13.447 30.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.173 5.173 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.794 3.206 11 H -0.189 1.189 12 H -0.198 1.198 13 H -0.202 1.202 14 C -0.051 4.051 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.162 4.162 19 C 0.307 3.693 20 O -0.457 6.457 21 N -0.341 5.341 22 C -0.056 4.056 23 C -0.030 4.030 24 O -0.303 6.303 25 C 0.020 3.980 26 H 0.096 0.904 27 C -0.150 4.150 28 C -0.150 4.150 29 C -0.165 4.165 30 C 0.000 4.000 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.102 0.898 47 H 0.076 0.924 48 H 0.146 0.854 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.088 0.912 52 H 0.095 0.905 53 H 0.084 0.916 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.996 -21.637 -13.137 28.924 hybrid contribution 0.762 0.242 1.230 1.467 sum -13.234 -21.395 -11.907 27.832 Atomic orbital electron populations 1.20212 0.84704 1.03391 1.03823 1.22769 0.98104 0.90146 0.99947 1.77216 0.87778 1.24989 1.27305 1.48995 1.05345 1.05126 1.53994 1.19125 0.79035 0.88756 0.97477 1.21421 1.13386 1.32419 0.91856 0.93573 1.25738 0.95470 0.94486 1.02238 1.69996 1.19355 1.33252 1.32943 0.85370 0.78326 0.78264 0.78626 1.18887 1.19768 1.20221 1.21436 0.98137 0.84695 1.00825 1.20430 0.92346 0.97858 1.03427 1.19672 0.90349 0.96375 1.20467 1.19346 1.01256 0.88483 0.95103 1.21669 1.04073 0.90927 0.99570 1.21185 0.75939 0.89434 0.82732 1.90673 1.53227 1.69400 1.32363 1.47953 1.67028 1.12547 1.06557 1.22744 0.99815 0.99473 0.83543 1.23100 0.95878 0.81983 1.02044 1.87800 1.90299 1.21530 1.30661 1.23538 0.95542 0.94434 0.84516 0.90433 1.22684 0.97070 0.91617 1.03676 1.22226 0.94613 0.98039 1.00163 1.22286 0.97558 0.96776 0.99856 1.22296 0.95632 0.81333 1.00781 0.89189 0.88916 0.89159 0.91729 0.96228 0.93480 0.91726 0.90652 0.87697 0.91766 0.92024 0.91123 0.87127 0.87858 0.86788 0.89761 0.92394 0.85353 0.88788 0.89618 0.91247 0.90471 0.91630 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.26 71.24 0.73 -0.89 16 2 C 0.06 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -16.23 12.58 -47.38 -0.60 -16.83 16 4 N -0.35 -16.90 3.60 -338.40 -1.22 -18.12 16 5 C 0.28 14.70 6.00 85.63 0.51 15.22 16 6 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 7 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 8 C 0.02 1.20 5.46 84.66 0.46 1.66 16 9 N -0.92 -52.31 13.29 21.45 0.28 -52.02 16 10 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 14 C 0.08 3.09 6.93 41.41 0.29 3.38 16 15 C -0.08 -2.65 9.72 71.24 0.69 -1.96 16 16 C -0.26 -8.76 5.35 -20.14 -0.11 -8.87 16 17 C 0.00 -0.08 4.41 29.85 0.13 0.05 16 18 C -0.12 -2.47 4.03 29.85 0.12 -2.35 16 19 C 0.52 11.62 7.68 87.66 0.67 12.29 16 20 O -0.58 -17.47 15.39 -3.03 -0.05 -17.51 16 21 N -0.61 -10.68 2.72 -792.19 -2.15 -12.83 16 22 C 0.07 0.78 6.25 86.44 0.54 1.32 16 23 C 0.05 0.50 7.01 72.15 0.51 1.01 16 24 O -0.38 -5.62 10.00 -148.98 -1.49 -7.11 16 25 C 0.08 1.09 3.99 31.98 0.13 1.22 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 C -0.11 -1.19 6.47 32.21 0.21 -0.98 16 28 C -0.11 -1.27 6.76 31.76 0.21 -1.06 16 29 C -0.13 -1.92 6.40 31.19 0.20 -1.72 16 30 C 0.10 1.78 3.04 45.95 0.14 1.92 16 31 H 0.09 1.90 7.06 -2.39 -0.02 1.88 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 1.96 7.25 -2.39 -0.02 1.94 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 35 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 37 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 39 H 0.10 2.57 7.79 -2.39 -0.02 2.55 16 40 H 0.06 2.16 7.08 -2.39 -0.02 2.14 16 41 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 42 H 0.07 1.89 7.21 -2.39 -0.02 1.88 16 43 H 0.11 1.84 7.61 -2.39 -0.02 1.83 16 44 H 0.10 1.88 8.00 -2.39 -0.02 1.86 16 45 H 0.11 1.05 5.97 -2.39 -0.01 1.04 16 46 H 0.08 0.94 7.48 -2.39 -0.02 0.92 16 47 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 53 H 0.06 1.05 7.15 -2.39 -0.02 1.03 16 54 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -73.30 426.03 3.69 -69.61 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.89 Total: 17.75 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: 5.99 Total: -8.69 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.68 Total: -99.80 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.54 Total: -24.63 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.30 3.69 -69.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053382644.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.000 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds